ZMP
glra1
Ensembl ID:
ZFIN ID:
Description:
Glycine receptor subunit alphaZ1 [Source:UniProtKB/Swiss-Prot;Acc:O93430]
Human Orthologue:
GLRA1
Human Description:
glycine receptor, alpha 1 [Source:HGNC Symbol;Acc:4326]
Mouse Orthologue:
Glra1
Mouse Description:
glycine receptor, alpha 1 subunit Gene [Source:MGI Symbol;Acc:MGI:95747]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa42393 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa42394 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa42393
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000005499 | Essential Splice Site | 16 | 444 | None | 9 |
| ENSDART00000047680 | Essential Splice Site | 16 | 458 | None | 10 |
| ENSDART00000066197 | Essential Splice Site | 16 | 459 | None | 11 |
| ENSDART00000136733 | Essential Splice Site | 16 | 457 | None | 10 |
Genomic Location (Zv9):
Chromosome 14 (position 26827301)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 14 | 25520503 |
| GRCz11 | 14 | 25817748 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAATGTTCGCACTCGGGATTTATTTGTGGGAAACTATTGTATTTTTCAGG[T/A]ACGTATCACCTTGTTTTGATGCAAAAGTGTTATTGTTTTTTACTCAAACA
Long Flanking Sequence:
CATGTACAAAGAAGCGCGGAGGGAAAGAGCAGACGCATATGTATATTTCCCCAATGACTTTGATGGCTGCGAGGAGGTATAGTGTATAGTTTCGTTTCTTTCAAATGTTTGCGATGGAGCGTCTGTGAATATTCTTGGCGACTGCGCATCTGATGCTGCTATGGATCGTCCGGAATGAACATCTGAATTTATCTCGTCGAGTTTTTTCCACAGCGCCGCTTCTTCCACCTGAAATTCCGCAACCCGCGTGAAACAGGAGCTCCGCTTCACCTACACAGTCGCTGTCGGGAAAATGACCAGCTCGTCTGTATGCTCTTGAGATTTGTTTGGCCTTTTTGGGAATCTGAAACGAGCAAAGGACGAATTGTTCACCTCAGAAGTGCGAGAAGAAGGAATTGTAGGGCGCGCTGAGCTGTAGCTTAACTACATCCACTCATCTCCAACCTGACACAATGTTCGCACTCGGGATTTATTTGTGGGAAACTATTGTATTTTTCAGG[T/A]ACGTATCACCTTGTTTTGATGCAAAAGTGTTATTGTTTTTTACTCAAACACAATATTTCATTGTTTTCCATTGAAATAGATGATTTCTTTAGCTACTTTTCCTGAGAATGTTCTGTTTAAGAAGGTAGATGAGATGCCATGTAGCAGTGATTGACTCCGTGGCCTGCTGGTTCATCTGATGAAATATAATGCCTGCTAATTAAAAATAAACTAAGTCATAATTCCGTGTCATTCATCCAAGTCAGAAGAAGTAAGGATTCCTTTTAAATTTGACTAAACAGCGAACACTAGTGGTCATTTAGTGGATAGAAAGTTATCAACAGGCTTATGAAGGAAAGTCACTTACCTATTTAACAAACAATTAAGTGGAAGCAAAATAACTTTCAGAATAATTGATTTTTTTTATAAATTATAAATGACTAACTGTAAATCTATAATATAATTAATTTGTCTTGTGCTGCTCAGCCTTTTAGCAACCCTCACGCACTTAGCGATAAACC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa42394
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000005499 | Nonsense | 233 | 444 | 7 | 9 |
| ENSDART00000047680 | Nonsense | 247 | 458 | 8 | 10 |
| ENSDART00000066197 | Nonsense | 248 | 459 | 9 | 11 |
| ENSDART00000136733 | Nonsense | 246 | 457 | 8 | 10 |
Genomic Location (Zv9):
Chromosome 14 (position 26889635)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 14 | 25582837 |
| GRCz11 | 14 | 25880082 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGATGCCAATGAAAATCACATACTCTCTGTGTTTCAGGGAAGTTCACCTG[C/A]ATAGAGGCTCGATTCCACTTGGAGAGACAGATGGGCTATTATCTGATCCA
Long Flanking Sequence:
CCCCCAACATATTACAATATAAACACCAGTAAGTAAACATTGTCATAATTCATTGTTAGTTGATCATAAGAAATCACTTATTATACCTAAATGCATGTATTAGCCTTGTTTGTTGTGAACAACAGAGAAACCACAAACACAGAACAATGCAACACTGCCTGTGGTTTTCTTTGATGTGCTGAGCTCACATTTAATTAAATCATAGCCTTTTGAAGTCTTAAACATTTGTTTATCAAATAGCTCTTTTGTGATTCATAGTCTACTAATCCCTGCATTTAAGATCCCTTAAAACGATAAAGGCTTTTGTAAGATATTAAACACTTTATGACCTTAAACACCATTTTATAAATCAAACATAATTAAAAATTGTTCCCACTTTCCAGCTCTGTTTAAAAGGCTGATCTTAATAAATATTCATTAACGGAACACTAGGGATAGAGTTAAAGCATGAGATGCCAATGAAAATCACATACTCTCTGTGTTTCAGGGAAGTTCACCTG[C/A]ATAGAGGCTCGATTCCACTTGGAGAGACAGATGGGCTATTATCTGATCCAGATGTATATTCCCAGTCTCCTGATTGTCATTTTGTCTTGGGTGTCCTTCTGGATCAACATGGACGCTGCCCCAGCCCGTGTGGGGTTGGGAATCACGACTGTGCTGACCATGACCACCCAGAGCTCAGGATCTCGAGCCTCTCTTCCCAAGGTCAGTAGTCTTCAGCACATTCATCGTCACAAATGAGCTATTGGAAAATCCCTCCCCTTGAATGCAGATGAGCCAATGGCAGTTGGGTGTCAGTTCCACAGAGCTTCACTGCCATAGAGAAACATTGCAATATCTAAATCAGTTTGATGGTGTTTATACTACAGAAATGGTAAAAGGATGTGCCTGGGGTACTTGCAACACTGCCTCAGGTAAGTTAGGTTGTATTAACATTATGTTAGCTAAAGTCAATTGCCATTACCATGTGAGTTAAATGCAAATTTATTTAATCATATCCTGTG
Associated Phenotype:
Not determined