ZMP
capn1a
Ensembl ID:
ZFIN ID:
Description:
calpain 1, (mu/I) large subunit a [Source:RefSeq peptide;Acc:NP_956739]
Human Orthologue:
CAPN1
Human Description:
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:1476]
Mouse Orthologue:
Capn1
Mouse Description:
calpain 1 Gene [Source:MGI Symbol;Acc:MGI:88263]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa2687 | Nonsense | F2 line generated | Not yet available |
| sa42288 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa2687
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000046066 | Nonsense | 229 | 704 | 6 | 22 |
Genomic Location (Zv9):
Chromosome 13 (position 43355779)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 13 | 42576738 |
| GRCz11 | 13 | 42702798 |
KASP Assay ID:
554-2682.1 (used for ordering genotyping assays)
KASP Sequence:
GAGGCGTTTCAGARATGTACGAGCTCCGGAAAGCTCCMAGAGACTTGTAC[C/T]GAATCATCAGCAAAGCCCTGGACAGAGGCTCMCTGCTGGGCTGCTCTATT
Long Flanking Sequence:
CGGCTCCCGGTCAAAGACGGAGAGCTCATGTTTGTCCATTCAGCAGAGGGAAATGAGTTCTGGAGTGCCTTGGTGGAAAAAGCCTATGCTAAGTACGTCCTGATAGACATTTTGGTAAAGGCCAGCAACATTTGTGCTTGCTAAATCATTTACAAAATCGGTTTTGTCCCAGTCTTATTAAAGAGTTTACCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGCGCGCGCGCGCGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTCGGTTTGTTTGTTTGTTTTGTGGCAGGCTAAATGGCTCTTATGAAGCTCTTTCTGGAGGCTCTACCACTGAGGGTTTTGAGGATTTTACTGGAGGCGTTTCAGAAATGTACGAGCTCCGGAAAGCTCCAAGAGACTTGTAC[C/T]GAATCATCAGCAAAGCCCTGGACAGAGGCTCCCTGCTGGGCTGCTCTATTGATGTGAGAACCTCATTAGTTTAAGAGATGCTTCATGAAAACTGTTACCTACTTGAACTAATTTTTTACTTTTAGTTAAGTAGATGTCCAATCTTCTGTTTTCTTAGACTGTTTCCTTTAACTTTAATTTAAACCCGCAGAAATAAAAAAAATATATAACTTTAACTTAGGGTGCTTTCACACCTACACTTTTGTTTCGGAACGTATCTCGTTTGCCCAGTTAGCGCGGTTCGATTGGCCTATGTGAACAGGGCAATCGCGCTCTGTTCCGCGCCAAAGTAATCGCTCCGAGATCGCTTGAATGAGGTGGTCTCGGCTCGATTGAAACGAACCCTGGAGCGGTTCGATTGTAGTGAGAAAGCGATCCGATCCGAGCGCGGTTGTATCACTGTGTTTTATGGATATGTAATAGGCATATACGGCTATATGAAGAGAGAATTATGATTGGGG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa42288
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000046066 | Nonsense | 390 | 704 | 11 | 22 |
Genomic Location (Zv9):
Chromosome 13 (position 43346042)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 13 | 42567001 |
| GRCz11 | 13 | 42693061 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTGTGTTCCTGTGCTGTTTTTCAGACACGTTCTGGATCAATCCACAGTA[T/G]AAGATCACACTGCTGGAGGAAGATGATGATCCGGAGGATGAAGAAGTGGC
Long Flanking Sequence:
GGAAAAAAAAATGTCATCTGGTGTTTACAGAAGAAAACAAAGATTATGTTTTATTTAAACACATTACAATTAAATAATGTAAATCCAAAAAAAAATCATCATTTTCAAGTAATCTCTTGTGTTTTTATAGTTAATAAAGTCATTAAACATTTTTTTTTATTATGATGTATATTTCACATCTAAATTTAATAGCTTTATATGTTCTTATGTGTTCAACAAAATATATTTACAATAATTCAAGCATTCAATATTACATTATACATGTTTTTGCTAATTAGGAAATATTAACTTATTATTATCAATGTTGAAAACCATATTATTTTATTAATACCGTGATGCATTAATTGTAGGATTCTTTGAATTTTAGGATGTTCAGAAAAACAGCATTTATTTAAAATGACATATCTTTACCGCCACCAGTTTCACCTAAGATTTAAAACAAATGGCTGCTCTGTGTTCCTGTGCTGTTTTTCAGACACGTTCTGGATCAATCCACAGTA[T/G]AAGATCACACTGCTGGAGGAAGATGATGATCCGGAGGATGAAGAAGTGGCCTGCAGCTTCCTGGTGGCTTTAATGCAGAAAGACCGCAGACGGTACCGCCGCCACGGACAAGATATGCACACTATCGGTTTTGCAATTTATGAGGTCAGGAGCCAATGGGTTCAGCTAGATTAGTACGCATATGATACAATAATCATATTCAGATGCACACTTAAAAATAATGATAAACCACCAAGACAACAGTAAAGAAATAGAAATAATTACATTATAAATAACTATTACATTATATTATATTATCTCCTACATTTTATAATGTAATTATTCATTTGATAAAGTAGATCATACAATTTTTATAAAGGAAAATTGTCTAATTGGTTTCTTTCTTCCGTTCTTTTCTCTGTAGGTTCCTGAAGAGGTATGAATCTTCTTCTTTTTTTTTTTTTTTTTGTCAAATAGGTTTGCTTATATAATTGTTTTGCCAACAAAACAGAAACCTGTTA
Associated Phenotype:
Not determined