Busch Lab

ZMP

pcdh15a

Ensembl ID:
ENSDARG00000052232
ZFIN ID:
ZDB-GENE-030616-3
Description:
protocadherin 15a [Source:RefSeq peptide;Acc:NP_001012500]
Human Orthologue:
PCDH15
Human Description:
protocadherin-related 15 [Source:HGNC Symbol;Acc:14674]
Mouse Orthologue:
Pcdh15
Mouse Description:
protocadherin 15 Gene [Source:MGI Symbol;Acc:MGI:1891428]

Alleles

There are 11 alleles of this gene:

Allele Name Consequence Status Availability
sa19068 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa42279 Nonsense Mutation detected in F1 DNA Not yet available
sa483 Essential Splice Site Confirmed mutation in F2 line Not yet available
sa2682 Essential Splice Site F2 line generated Not yet available
sa13589 Nonsense Available for shipment Available now
sa22367 Nonsense Available for shipment Available now
sa5868 Nonsense Mutation detected in F1 DNA Not yet available
sa1509 Nonsense Available for shipment Available now
sa35571 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa19068
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Essential Splice Site 36 1796 3 35
ENSDART00000139931 None None 1308 None 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 42093645)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41315261
GRCz11 13 41441151
KASP Assay ID:
2260-6868.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCCTTTCTCTGCTGCTGACACTAACGTCCCTCAGACTGGCACTATGAGGG[T/C]AAGACTGCTTTTCTTTCCTCTTTCACATCTTTTTTCCACTCTCCACTCAT
Long Flanking Sequence:
TCCATCTTTCCCACATATTATTGTAGCACAGTTTGTGCTGAATACAAAACAATACATGTTGGCCAATGCTATGTGCTAAGTAGCTAAAATAAGCACAAATGTCAGGGCATGTCAAAACATTTTAGGGGTCCCAAAATCACCTCAGACCCCAGAGGGTTAAATTTAAATAAACTGAGCATTTTTATGTGGTCTTGTAACATCTATTGTTTATTCACACAGACTCAAAATTCAGACATTCAGCAGAGGCTTTTATTCAGAGTGATTTGAATTTAAATATCTTTGAATAACATTTTATTTTCTCGTTTACTCAAATTCTGCAATTGGCTTGAACTTTAAAGGCATTGTCGTTTCATTTCTAATGGCACGCAGCCTTGTTCTGTGCACAATTCTCTGTGTTTCTCTGTCTGGCTGTCTTCTCATATGTATCTTTCCTTTTCTTCTCTTCTTTTCTCCTTTCTCTGCTGCTGACACTAACGTCCCTCAGACTGGCACTATGAGGG[T/C]AAGACTGCTTTTCTTTCCTCTTTCACATCTTTTTTCCACTCTCCACTCATTCACCTGTTAAAGTCGTTTAACACTTCTGTACTTAAAATATCGATCGGGGTGTCAAACTTAAATTATGTTGAGAAGAAAAGATTTGTTGATTAGTTTGCGCACAAATGTATTATTGATACAAATATTAACCTTACTAACCACTTTATGATTTATATGAAAAAGGTAATAAAAAGTACAAATTTTGGGGGGGTTATTCATTTATTTATTTGTTTATTTAATTATTATTTTTATACTATCTCAAATGTATTCAGTCATTTATTTATTTATTATTTTTATGATATCTCAAATGTGCTCATTTATTTATTTATTTATTTATTCATTCATTTATTCATGCAATTATTAATGTATTTATTTATTCATTTATTTAGGCATTTTATTTTTTATGTATTTTATTTATTTATTTATTTATTATTTTTATGATATCTCAAATGTGTTCATTTATTTATTTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42279
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Nonsense 190 1796 7 35
ENSDART00000139931 None None 1308 None 21
ENSDART00000143450 Nonsense 190 297 7 9
Genomic Location (Zv9):
Chromosome 13 (position 41979209)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41241261
GRCz11 13 41367151
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCGGCTTCTCAGGAAACAATGGAGCCACGGACATTGACGACGGACCAAAC[G/T]GACAGATTGAATACGCCATTCAGTATAACCCAAATGACCCGGTACTTCAT
Long Flanking Sequence:
GTAAAGAACATCAACAGAGAAAAAAAAAACATCAAATGCAAATGCCACCGCAGTTGTAGAATGACCCGCCTGTTATTTTAATATCAGTAGTGAGTGTATTTATGTTCAGACATGATTGTTTTTCTCCCTGTCTCTCATTTTCCGTTTTGACTCCCGCTTTTTTGTTGTCTTCTCTTTGTTTCGCCTTTTCTCTGTATTTTTTTTCTACCTCTTCTGTCCCTGTGTCTTCGATTGATACAACAGAAACACACACACACACACGCGCACAAACACACACAAACACACACAAACACACACACACACCATCTGCTGGGTCACATCTGAGGACTGTCAGAGTCGCTGTATTGTTACACTCGCGTATCGCCAGGGTCTGATGTATGTTTCATGTGTTTTTTTTTATTTATCATTTTTGTTTTTTGCAGCTCACTCCTGTTGGCACCACTATCTTTACCGGCTTCTCAGGAAACAATGGAGCCACGGACATTGACGACGGACCAAAC[G/T]GACAGATTGAATACGCCATTCAGTATAACCCAAATGACCCGGTACTTCATTTGATCAGGCTGAGCTTCTGCAGTTACACTAAACTTCTTCATTGTGATTAATGATTTAGCAGCGTTTTCCAGGTGCCTTCTGTTTGTGGTGTTGTATTATAGGAAATACTGTAAAAAATAAAATAAAATCCTTGCTTTGTTAAACATCAATTAGGAAAAATTTGAAAAAGAGCAGGAAGGCGAATAGTTTTGACTTCAACTTTTTTTCAACATTTTTTTATATTTGTAATTGCTTTTAATAGTGCAGTTGTAAAACTTTGACTTCCTGCATTTATTTTAGTTTTGTAACCTTGCCTTGATTAGTAAAAATATATCAATTGTGTTATTAATTACTGTACATATACATTCACTGGCCACTTTATTATGTACACCTTACTAGTACTGGGTTGGACCCCTTTTTGCCTTCAGAACTGCCTTAATGCTTTGTGGCCTAGATTCAACAAGGTACTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa483
Status:
Confirmed mutation in F2 line
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Essential Splice Site 333 1796 10 35
ENSDART00000139931 None None 1308 None 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41963872)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41225924
GRCz11 13 41351814
KASP Assay ID:
554-0334.1 (used for ordering genotyping assays)
KASP Sequence:
CATTCAGCCGCCCTCAGATAGACCTGGAATCTTGTACTTCATACTGGTTG[G/A]TGGGTATTTAAATGAGGATTCAATTAAAGGGATAGTTCACCCAAAAAAGA
Long Flanking Sequence:
TCTGCAAAATTGTTGCAAACAATTTATATGGGTTAATTTTAAACAAATTAAATGTAGTAATTTTCAATTTATTTATTTATTTATTTATTTATTTATTTATTTATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTGATTAAATTCAGCCCAAATACATTGTTTACAACCACTTAACTTCAGGAATAATTTTTGAAAATGTATTTTTTCAGTGTATTAACTACAAATAAACAGCCAATTACTGGTTTACTGAGGTAAAATGCTTTTTTCTTGTGGGGTTATAACTTAAATTGTACATTAAAATAAAGTGTGACTGAACATTTTAATCTTTTAGTCAACTTCATTGTTTGATCATCTATACCTGTTTTTCCATATTTATAGAACAAGCTGAACCCTCTGAATGTGACGCCTCCCATCCGAGCCATAGACCAGGACAGAAACATTCAGCCGCCCTCAGATAGACCTGGAATCTTGTACTTCATACTGGTTG[G/A]TGGGTATTTAAATGAGGATTCAATTAAAGGGATAGTTCACCCAAAAAAGAAATTTACTCACTCTCAAGTGGTTACAAGTGGCTTTTTTTTTCTGTTGATCACAAAAGAAGATATGTTGAAGAAAGCTGAAAACCAGAAACTGACTTCAATAGTAGGAAAAACAAATACTATGGAAGTCAATGATAACAGGTTTTCAGCTTTCTTCAAAATTACTTCTTTTGTGTTCAACAGAAGAAAAAACAGGGTTGGAAACAAGTAAAGGGTGAGTAAATGATGACATAATTTTTAGTTTTAAGTGAGCCATCCCTTTAAATATCTCTTTCAACAAACAAACAACACGTTTGGAACGAACAAATGAATGAAAGAATTAGTGACACATTTGACACATGTGAAACTCAACTGAACAACACATTTGGAACAAACAAATAACACATTTGACTCATTTGAAACGAGCAAACAAATTACACGTTGGAGCAAACGAATGAATGACACCCTTGACA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa2682
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Essential Splice Site 644 1796 16 35
ENSDART00000139931 Essential Splice Site 159 1308 3 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41931848)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41193900
GRCz11 13 41319790
KASP Assay ID:
554-2576.1 (used for ordering genotyping assays)
KASP Sequence:
TGGAGATCAGCGAGGCCATGAGGATAGGAGCCATACTGCTCAACCTGCAG[G/A]TWCACACTGACTTTGGAATATTGCCTAATTTARTTTTCYCCCAAYGTTAT
Long Flanking Sequence:
TATTAAGCACCATTAAAAACTATAACGTCATACACAGAGACAATAAAACAGGCTACAATAAATGATTAACTGTCTGTGTTTGTTCTTTAGCTGATGGCTCAGGACGCTGACGCTGGTTTAAACGGCCTCATCACATATGCCATACTGGCTGGAGATCACGGGGATTTCATCATCAACAACCGTACAGGACGAATCACTTTAGCACCAGGGGTCATGCTGACTGTCGGCCGTTCATACGCACTGACCGTAAGAGCTGCAGACAATGCTCCTGACACTGAGAGGAGGTCAGATACGAACACATTACATCATATTCTGCTCTCAGCTTTTGCATGTGTCTTTATTTCTTATTCTTTCTTTATGTGTGAAGGAGCTCCATTACTACGGTTTACATAGAAGTTCTGCCACCCAACAATCAGAGTCCTCCACGATTCCCCTTACAGACCTACAACCTGGAGATCAGCGAGGCCATGAGGATAGGAGCCATACTGCTCAACCTGCAG[G/A]TACACACTGACTTTGGAATATTGCCTAATTTAATTTTCCCCCAATGTTATTTATAAGTGGTCATGCAAAACATGTAAATTTAATTTTTTTTAAAATATTTTCAGTTCAGGGCCTAATTAATAGGTTTTTTTTTTTTAATACAAAAATAATATATCATGTAAAGTTCAATTTATTTTTATAAATGTAAGCGATATTTCTGCATGCTTTTTGAAGCTTAAATTATTAATATTGATCAAATATTGTTTACATTTATTTCTTTCATCCAAAAAAAATGGATGGATAGATAGATGAATGGATGGAAAAAGGAAATAGATGGATGGATGGAAGGAAGGATGCATGGATGGATGGACGGATGGATGGACAAAAGAAATAAATGGGTGAAATGGATGAATGGACGAATGTAGGAAAGAAATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGGCAAAACAGATGGATGTATGAATAGAGGAAAGAAATGGAGA
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461

Mutation Details

Allele Name:
sa13589
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Nonsense 1008 1796 23 35
ENSDART00000139931 Nonsense 523 1308 10 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41867326)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41129378
GRCz11 13 41255268
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GACTGGTTATCACCAAAGTCAACCTGAATGAGCAACCCACCACTGTTTTC[A/T]AGGTGAGTCTGAGCTCAGTACACGTCTTTCTGCTCAKATGTGCCTAATTT
Long Flanking Sequence:
ATGTCAGTGTGTTCCTTACAGAAGGTATATTGTATGTCTTGAAAAGGCGTGCAAATTGCCAAGTGATTTGGTTTCATTTGTCCTGTTTGGAGCTTGAAAGTCACCAATTTCTGTCATTTTTACCTTCATTATATTGAAAATAGCTGCTTGACAAATATTCAGCAAATTATTATCATTTGCTGTTGTGAAAAGAATATATAATGAAGCTCCTTTTGAAGCAGTGATAACAACAGACGTCCGTAATTATATAATAATGTGATGCACAGAATGAAATATAATGAAGGCCCAGGTTTGGTCTTTTTAATGTGAGTAGATGTAAGTTCTCTGAGGATGTGTTTAAACTGAGTGTGTTGCTCCCTCAGGGTACTCCTGCCAGTAAAGTGCGCTACAGAGTGGATCAGGAACTGTCTCCTTACAGTGGAAGCATCTTTGATGTAGAGACGGACACAGGACTGGTTATCACCAAAGTCAACCTGAATGAGCAACCCACCACTGTTTTC[A/T]AGGTGAGTCTGAGCTCAGTACACGTCTTTCTGCTCATATGTGCCTAATTTGAGTCAGAATCCAGCTTAATTTCAGCTAGATTTGAGTTAAGCTTTTGTTTTAAAGCAAAAAAGGACAATGAATATAGATTGGATTTATCTTTTTTTTTTGAACATGCATAAACAATAACTTGCAATCCTACAATGGGAATGGAAAGACAATGCACAAACCAAAAAAAGGCAGACACAGCAGCTCACAGAACATGCAAATAAAAGATGGTGACTTTTTATTTTGATGGTCTGTTTGTTTAATTTTATTACATTGCATTTACAAGCTAACTAATTCTCATTAGATTATAAGTAGACTATTAGGTTGGGGTTAGGGATCGGGTTAGGGTTAGTGCAAGTTGACATGCAAAGTTTTTTATGGTCAGTTCAATGCCTGTTAAAGGAGCAGTATCAGCAGATATTAAGCAGACAGTCTACTAACGCCCCATTCACACGGGGCTTCAGCGTCAACGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22367
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Nonsense 1226 1796 28 35
ENSDART00000139931 Nonsense 741 1308 15 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41826863)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41088915
GRCz11 13 41214805
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCAAGAGCGCCATCATGTTTAGAAACATGCGCCGGTCCTACTTCAAGTTT[C/T]AGGTCGTCGCCACAGATGACTATGGAAAGGGGCTCACCAGCAAAGCAGAT
Long Flanking Sequence:
AACATGGTAAAAATGTGGTCGAATCTGAAAACATGGTGAAAATCAGGCCTCTGGTGGATTCGCGAAAAGAAAAATTTGGAAAAATTTAGCTCTTTGGACATATTTTGCTCTCTCAAGAAATGTATATAGTGGTGTGTAATCAGAATGAGCCTGGGTTGGATATAAATCTATAAAGACAAAGACAAATTTGGAATGTTTAAAAACAGTATAAAGGTTCACTTTAAATATATTGTATGTATTGAACACAGTGGAATTAGGTGATGGTGAAATGTTGGTTGATCTCAAAAAGGAAAACTCATTTTATTGAATGTATAGTTAAAACGTTTTATTTCTTTCATCAGGCTACAGATGTTGACACTGGGAACTACAGTAAGATGGCCTACAGACTGATCATCCCCCCCACAACTGAGGGGCAGGACAGTTTTGTGATTGAGCCCTACACCGGAGTCATCAAGAGCGCCATCATGTTTAGAAACATGCGCCGGTCCTACTTCAAGTTT[C/T]AGGTCGTCGCCACAGATGACTATGGAAAGGGGCTCACCAGCAAAGCAGATGTAGTGGTGAGTGCGGATCATGTGACCTGTAAAGGCCTGTTTATTGACATTATTCTGCCATGTGAGAGCAAGCGCAGCAATTTGAACATTATAGGGTATATGCACAGCTATTGTTTTTTCCCTACCGATAATCTTTTGGTGAAAGGTTTATGTGACTATTTTCAATATTATAAGGTTCCATTTTTACAGCATCGATGTTGTAATGTAATTAAAATATAATCTATTAAATAGAACTAAGAATTCATTTAATTGTTGAATTGTAAAACGAGATGTAAACGCTAGCGTCGTCAGTAGCTGCAGGCGACCGCAAAAACTCCATTGAGAATACTGTGGTAGAATAAATTGTCATATTTTAAAGACATGAACTATGTAATTTAATGCAGAGCTTCTTGTACAACCCACTTTATATCATATAATAATCAGGCAGTATATTAATCAGGCATTTTTAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa5868
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Nonsense 1516 1796 35 35
ENSDART00000139931 Nonsense 1028 1308 21 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41784237)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41046289
GRCz11 13 41172179
KASP Assay ID:
554-3953.1 (used for ordering genotyping assays)
KASP Sequence:
TGCGCAGCAAGCTTCCCAAATCAGAAAGCGCCATCACCTTCCTGTCAGAC[G/T]AACGGCCACTCACTACTCAAAATCCCATTTTCCAGGATGGCCTATCTAGT
Long Flanking Sequence:
TAAAGTGTTCCCCATATGAGAACTTTGACTAATGTCTGTTTTGCACGTCCCCGGAAGGGCATTAAAAATGCACTAAATTGAATGCAGAATAAAGTCTCCTGAAGTATTAGCAAAATCATCAACTATCAAATACATTCTTCAGTTTGTACAAAGTCTAATATCGTAAGCAAATTTGTTAGGTTTAGCTCTTTCAAAGTCCATTAAAGTGAAGGATTTGTTTTGTGTAGTGGCTCATTAGCATGCTATGCTCCCACGGCTGTTCTCTTCCTTCAATTCCTTCCCATCTCTTTTCACACACGTGCTTCATTCCTCTCTCCTTTTGGTTTTCTCTCGTGGTCTGCAGAAGACGCAGAAGGTCTGTAATCGAGGAGGCGGACAGACAGAGCCTCATACGAAACTTCGCCTCGCGTGCCATTGCTGCTCACAAACAGACCACTGGAAACGGACAGATGCGCAGCAAGCTTCCCAAATCAGAAAGCGCCATCACCTTCCTGTCAGAC[G/T]AACGGCCACTCACTACTCAAAATCCCATTTTCCAGGATGGCCTATCTAGTAGTCCGGAACCTAACTTGGAGGTCCGAAGGATTAGTGGTTTTCTGTACAGTGACCCACCTTCTCCAACAAGCCCCTGTGGTCAATTCACCTCATGGTCACTGCCATCCAGAATTCGAGGACGAGGATTTTACAGTACTCTGCGCAGACAAGCTCTCTGGGACCCGGCCCAGTGGGAGGAGCAACAGCTGAAGGCGGAGCTTACAGACAGCAGGGAGGAGCTTGATGCAGATCAAAGTGGTCGGAGTACTGAAACAAAACTATCAGTCAGAGAACAGGCCAGACAGTTTGAGGCTTTGGCTGATCGAACCCCCAGGCAAAGTCGTGACTCTTACGCATCTTTGGATCCTGACGACCCACTGCTGGGCACCATCATGCTTTCGTATAGTACAATTTCTGTTGGCAAGGACAGCCCGCCATGCATTATCATAACAGGGGACGATGGTGAGACT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1509
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Nonsense 1560 1796 35 35
ENSDART00000139931 Nonsense 1072 1308 21 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41784105)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41046157
GRCz11 13 41172047
KASP Assay ID:
554-1433.1 (used for ordering genotyping assays)
KASP Sequence:
TTAGTGGTTTTCTGTACAGTGACCCACCTTCTCCAACAAGCCCCTGYGGT[C/T]AATTCACCTCATGGTCACTGCCATCCAGAATTCGAGGAMGAGGATTTTAC
Long Flanking Sequence:
CATTCTTCAGTTTGTACAAAGTCTAATATCGTAAGCAAATTTGTTAGGTTTAGCTCTTTCAAAGTCCATTAAAGTGAAGGATTTGTTTTGTGTAGTGGCTCATTAGCATGCTATGCTCCCACGGCTGTTCTCTTCCTTCAATTCCTTCCCATCTCTTTTCACACACGTGCTTCATTCCTCTCTCCTTTTGGTTTTCTCTCGTGGTCTGCAGAAGACGCAGAAGGTCTGTAATCGAGGAGGCGGACAGACAGAGCCTCATACGAAACTTCGCCTCGCGTGCCATTGCTGCTCACAAACAGACCACTGGAAACGGACAGATGCGCAGCAAGCTTCCCAAATCAGAAAGCGCCATCACCTTCCTGTCAGACGAACGGCCACTCACTACTCAAAATCCCATTTTCCAGGATGGCCTATCTAGTAGTCCGGAACCTAACTTGGAGGTCCGAAGGATTAGTGGTTTTCTGTACAGTGACCCACCTTCTCCAACAAGCCCCTGTGGT[C/T]AATTCACCTCATGGTCACTGCCATCCAGAATTCGAGGACGAGGATTTTACAGTACTCTGCGCAGACAAGCTCTCTGGGACCCGGCCCAGTGGGAGGAGCAACAGCTGAAGGCGGAGCTTACAGACAGCAGGGAGGAGCTTGATGCAGATCAAAGTGGTCGGAGTACTGAAACAAAACTATCAGTCAGAGAACAGGCCAGACAGTTTGAGGCTTTGGCTGATCGAACCCCCAGGCAAAGTCGTGACTCTTACGCATCTTTGGATCCTGACGACCCACTGCTGGGCACCATCATGCTTTCGTATAGTACAATTTCTGTTGGCAAGGACAGCCCGCCATGCATTATCATAACAGGGGACGATGGTGAGACTCCTCCTCCACCCACAGCTCAGCGACCGACTCCACCGGTTGTGAGGAAGTTCAGCTCCAGCATCTCAAATTACATGACAGTGGAGCCTTGCGAGATTTTGTTGGAATTCATATCAGACTTTCCAGGGAGCCCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa35571
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Nonsense 1634 1796 35 35
ENSDART00000139931 Nonsense 1146 1308 21 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41783883)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41045935
GRCz11 13 41171825
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAAAACTATCAGTCAGAGAACAGGCCAGACAGTTTGAGGCTTTGGCTGAT[C/T]GAACCCCCAGGCAAAGTCGTGACTCTTACGCATCTTTGGATCCTGACGAC
Long Flanking Sequence:
GGTCTGTAATCGAGGAGGCGGACAGACAGAGCCTCATACGAAACTTCGCCTCGCGTGCCATTGCTGCTCACAAACAGACCACTGGAAACGGACAGATGCGCAGCAAGCTTCCCAAATCAGAAAGCGCCATCACCTTCCTGTCAGACGAACGGCCACTCACTACTCAAAATCCCATTTTCCAGGATGGCCTATCTAGTAGTCCGGAACCTAACTTGGAGGTCCGAAGGATTAGTGGTTTTCTGTACAGTGACCCACCTTCTCCAACAAGCCCCTGTGGTCAATTCACCTCATGGTCACTGCCATCCAGAATTCGAGGACGAGGATTTTACAGTACTCTGCGCAGACAAGCTCTCTGGGACCCGGCCCAGTGGGAGGAGCAACAGCTGAAGGCGGAGCTTACAGACAGCAGGGAGGAGCTTGATGCAGATCAAAGTGGTCGGAGTACTGAAACAAAACTATCAGTCAGAGAACAGGCCAGACAGTTTGAGGCTTTGGCTGAT[C/T]GAACCCCCAGGCAAAGTCGTGACTCTTACGCATCTTTGGATCCTGACGACCCACTGCTGGGCACCATCATGCTTTCGTATAGTACAATTTCTGTTGGCAAGGACAGCCCGCCATGCATTATCATAACAGGGGACGATGGTGAGACTCCTCCTCCACCCACAGCTCAGCGACCGACTCCACCGGTTGTGAGGAAGTTCAGCTCCAGCATCTCAAATTACATGACAGTGGAGCCTTGCGAGATTTTGTTGGAATTCATATCAGACTTTCCAGGGAGCCCACCTCCATCCCCTCCATCTCTTGTCCCATCACGCTCTTTTCTTTCTCCTCCATGTCTGGAACTTGACTGTACCCCGCCACCGACCCCACCTCCCATCCAGTCTCCGGAAATCCCTGTTCAGTGTCCGACATTTAAACCGAAAGGCATCCTGAAGAACTCTGACAGATTCGGTTGCAGCCCTGATGTTAAATATGACAACAAGAACGATGTATAAGCCAGCCAA
Associated Phenotype:
Not determined