Busch Lab

ZMP

atl1

Ensembl ID:
ENSDARG00000060481
ZFIN ID:
ZDB-GENE-030131-8003
Description:
atlastin-1 [Source:RefSeq peptide;Acc:NP_001139172]
Human Orthologue:
ATL1
Human Description:
atlastin GTPase 1 [Source:HGNC Symbol;Acc:11231]
Mouse Orthologue:
Atl1
Mouse Description:
atlastin GTPase 1 Gene [Source:MGI Symbol;Acc:MGI:1921241]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa5865 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa24941 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa42256 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa5865
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000085230 Essential Splice Site 175 559 4 14
ENSDART00000111832 Essential Splice Site 175 554 4 13
ENSDART00000146696 None None 136 None 3
Genomic Location (Zv9):
Chromosome 13 (position 37177100)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 36649402
GRCz11 13 36775234
KASP Assay ID:
554-3863.1 (used for ordering genotyping assays)
KASP Sequence:
TGACTCAGCTACTGTATTCGCCCTCAGTACCATGATCAGCTCTATGCAGG[T/C]TTTACATTCACAACACTGCACAAATATCACCCCCAAAATAAGTGAAGTAA
Long Flanking Sequence:
ATTGTTGAATAGAAGCAGTCATTCCTTACTGACCCCAATGGTACATGTGGTCATAAACATTTCATGCTTGTTATCAAACTATTTCATAACTGTAACAAGAGGCAATTCAATCATAATGTTAACATAACTATCATAACATTATTTATCATTATATGGCTTTTTGTATTCTCAGAAGCTATAGAAAATTAAAAATGTAAAAAAGGAAATACGCTGGGACCATTGCTTTTGTCGCTCAAAATGGTCTAGTTTCAAGACTTTAACAGCTTTATAACATATCTACTGTATGTAAGCTGAGTCTTTACCGTATTCTTGTATGTTAAATGAAGTAAAACTCCCTGAGAGGTTTGTGTCATGGTTTGAAAGGCAGTCGTGTATTATATCTTTTCGCCTTTAGGTGGCAGTGCTGCTAATGGACACACAAGGAACCTTCGACAGCCAGTCCACTCTCCGTGACTCAGCTACTGTATTCGCCCTCAGTACCATGATCAGCTCTATGCAGG[T/C]TTTACATTCACAACACTGCACAAATATCACCCCCAAAATAAGTGAAGTAATAACTCTTCGTTCTCAGTGAAAAGTTAACATTGACGCCATTTCGGTTCCTTCTAGGTGTACAACATATCCCAGAATGTTCAGGAAGACGATCTTCAGCATTTGCAGGTATATAAAGACTCATACAGGAATCCACAATGATAGTAAATGTAGTGAGACAGTTAGGCTTTAAAGATTGAGAACTACAGTGGGTGTTTGCAAGAAATTAAAGTTTCTTGACAGCATTATTATTACCTTATCACATTAGTCCTGCTTGGAATGCAATAATCTGGGAAAGCTGTAGTTTTGTGTGTGAAACAGAACTGAAAATAATCTTACATTTATAATGTGAAACAATATACAACAATAAATATTTTTATAAGTAATAAGTATGTGTTTTTCTGTGACCTGTATAGCTCTTCACCGAATATGGCAGACTGGCTATGGAAGAAACATTTCTCAAACCGTTTCAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24941
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000085230 Essential Splice Site 242 559 7 14
ENSDART00000111832 Essential Splice Site 242 554 7 13
ENSDART00000146696 None None 136 None 3
Genomic Location (Zv9):
Chromosome 13 (position 37177845)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 36650147
GRCz11 13 36775979
KASP Assay ID:
554-7565.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCCTTATGGACAGGAAGGAGGAATGAAATTTCTGGAGAAAAGATTAAAAG[T/A]AAGTCTATGGAATCATGGAAATGTCAGGAGGATTTACACCAGGATTTTGC
Long Flanking Sequence:
TGCAAGAAATTAAAGTTTCTTGACAGCATTATTATTACCTTATCACATTAGTCCTGCTTGGAATGCAATAATCTGGGAAAGCTGTAGTTTTGTGTGTGAAACAGAACTGAAAATAATCTTACATTTATAATGTGAAACAATATACAACAATAAATATTTTTATAAGTAATAAGTATGTGTTTTTCTGTGACCTGTATAGCTCTTCACCGAATATGGCAGACTGGCTATGGAAGAAACATTTCTCAAACCGTTTCAGGTATTATTTTAACGCTTCGGCTGTCAGCTTCTAACAGTGATACAATTCTGAAAGCAGCATCTGTTTTCAGTATGTTTTGTTCCAAAGTTTCATGTAATGATACTCGTATAAAAAATGTCCCTAACCACCTGCTATGTGTCATTTCACAAGTCACTGATCTTTCTGGTGCGGGACTGGAGCTTTCCATACGAGTTTCCTTATGGACAGGAAGGAGGAATGAAATTTCTGGAGAAAAGATTAAAAG[T/A]AAGTCTATGGAATCATGGAAATGTCAGGAGGATTTACACCAGGATTTTGCATTTTTGTGGCCTAAAATGGCAGCATTTCTCAAAACATGCAGCAATATTTGTGGAATTCCTCGTGTTGTTTTGCTGTAAAAAAATATAAAAAGAGAACAATCTACATTTTTTTACCTCAAGAATCAATGAGCTTCATAATTGATATAAATAAAACGCTAAGAGAGAATCGATGGATCCTCAGTGTAGCCCTATTGTATCGTATTTTTGCCAAACACAATTAAAATCACTGAGCTTTATCATAAAAGTAAGCATGTAAACATCATTTTACTATCAGGGCAATAAATTATATATAAAGGCATTTTATGTAAGTATTCTGCTTTGATGTTGTTAAAATATAATTGATTTGAAATAAATAGCTTTTTTTTGCCCAGTTTGAGCCACTAAGTAAAACTGAGCAGTTTTTCTTCCCCCTTTGTATCCTCACTATATACTATACGAGACATTTAAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42256
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000085230 Nonsense 529 559 14 14
ENSDART00000111832 Nonsense 524 554 13 13
ENSDART00000146696 None None 136 None 3
Genomic Location (Zv9):
Chromosome 13 (position 37185806)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 36658108
GRCz11 13 36783940
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AACACTTTACAATCTCTGTCATGTCTCCCTCAGGCTCTGTATAAGCTGTA[C/A]AGCGTAGCGGCAAACCACAGGCAGCTGTATAATCATGCCTTCCCTGGACA
Long Flanking Sequence:
ATGTGTTTATGGAAACCATACTTCTCACTGTAATTTAACAAAAATATTGCTGATAAATAAATATTAGCTGTCTATCTTGATCAAAATGATTGGATACCCGATAAAATATATGACATATTTATTACATTCTGTTTACATATTAAACTATTATATGTATGTGCGTATATACACACACACGTATATATGTATGTCTATATGTATATATATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATAAAATGATCAAAAGTGTGTATGATTATCTATGACAAATAGATCTGCTTTACGACATAAATTTACCATTTCCTTATCTCTTTGTTTTAGGGAAACACAAATGAGGTGAGAAGGCTTTACTGTACCTGCACACACTCACCTTTCAGCTTACATACTATCCCATAACACTTTACAATCTCTGTCATGTCTCCCTCAGGCTCTGTATAAGCTGTA[C/A]AGCGTAGCGGCAAACCACAGGCAGCTGTATAATCATGCCTTCCCTGGACACCAGAGCGACCAACAGCCCGAGCAGGACAAGAAACGAAACTGACCGAACACAGCTTGTGGACAGAGACAGTAGAGCGTACGTACAGTCAAAGAGAGAAAGAGACGCGGGACAGTTCTCCATCTGGTCACATTCACACAACACAGAAACATCATCCTGCACCTACAGCTCAGGCCCAGAGTCACATGATGAGGAAAATCAGACCCCGAAGAGAGTCTGCAAACATCCAGGCTGACCTGCAGTAAAACAACGAGTCACAGTATTAGTTCTGCCGCTCATCTTCTCACTGTAAATACGGTTTCTCTCTTTGACACTCACATGAAAGCAGTCTGTTCTTCTTTTGTAATGGATGTTGTTCGTTGAGTTCAGTGCTATTTATAAGGGAATAAAATACTACATGTTTAAAACACAAGCTGTCGTCGAGATCATTCTGAATGATAATCAAATAACTA
Associated Phenotype:
Not determined