Busch Lab

ZMP

ldb3a

Ensembl ID:
ENSDARG00000056322
ZFIN ID:
ZDB-GENE-040121-6
Description:
LIM-domain binding factor 3 [Source:RefSeq peptide;Acc:NP_958913]
Human Orthologue:
LDB3
Human Description:
LIM domain binding 3 [Source:HGNC Symbol;Acc:15710]
Mouse Orthologue:
Ldb3
Mouse Description:
LIM domain binding 3 Gene [Source:MGI Symbol;Acc:MGI:1344412]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa35470 Nonsense Mutation detected in F1 DNA Not yet available
sa42182 Nonsense Mutation detected in F1 DNA Not yet available
sa42183 Nonsense Mutation detected in F1 DNA Not yet available
sa1447 Essential Splice Site F2 line generated Not yet available

Mutation Details

Allele Name:
sa35470
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044719 None None 283 None 8
ENSDART00000074061 None None 589 None 13
ENSDART00000074064 None None 501 None 12
ENSDART00000078720 None None 159 None 6
ENSDART00000078721 Nonsense 113 299 4 7
ENSDART00000078740 None None 291 None 10
ENSDART00000078747 None None 580 None 12
ENSDART00000078757 Nonsense 113 596 4 11
ENSDART00000078759 Nonsense 113 649 4 12
ENSDART00000126467 Nonsense 113 646 4 14
ENSDART00000129841 Nonsense 113 350 4 11
ENSDART00000130101 Nonsense 113 200 5 5
ENSDART00000130424 None None 588 None 13
ENSDART00000130957 None None 264 None 7
ENSDART00000131856 None None 246 None 10
ENSDART00000131870 Nonsense 113 649 5 13
ENSDART00000133065 None None 227 None 7
ENSDART00000136863 None None 251 None 8
ENSDART00000137220 None None 247 None 8
ENSDART00000139218 None None 243 None 8
ENSDART00000147348 None None 244 None 8
Genomic Location (Zv9):
Chromosome 13 (position 22653576)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 22382914
GRCz11 13 22513364
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATACTTTTCTCCACACACACATACACCTCTTTTTTAAGGATCATCCTGTG[C/T]AAATAAATGGGGCTCTCTCATCTTCTGCTGAGACAAACTCATGCAAAAAC
Long Flanking Sequence:
TAACAGTTTTTATAGTAGTTTTATAGTAAACAAAGGCAGGTTTTTGAGAACAAGTCTAAATAAAATGTTATAAAGTAATTTAGAAAGTTTGTTTTCTGAAATTTTCTGAAGTTTATTTAGGCAAGACAAGTTTATTTATATAGCACATTTCATACACTATGGTAATTCAAAGTGCTTTACATAAACAGGAATAAAAGAAATATATAAGAAAAGTATATAAGAAAGTATAAGAAAATAAAAACTAGAAAAAATAAAAATTATTAGAAACTGATAAAAATAGATTAAAATGTGTTAAAACAGGTTTTAAAGGAATGAAAAAGAAAAGAAAGACAGCATATATATATATATATATATATATGTATATATATATATATTTCTACAAAATGTCCTGGATGTTATTTTCCATTCTCATTCTCAGCTTTCCTCTCCTTCTCGCTGCTTTCTTTCTCAATACTTTTCTCCACACACACATACACCTCTTTTTTAAGGATCATCCTGTG[C/T]AAATAAATGGGGCTCTCTCATCTTCTGCTGAGACAAACTCATGCAAAAACACCAGCCCATCCTATAGCTCTGTGCTGAGCAGTAGCGGAGAGACTTCTGTGCCTGCTCAGGGGCATTTAGCTGCTCCGAGGGACAAATCCAGCTCCAGACAGAAAAGCCAGCAGTATAACTCCCCCATCGGCCTGTACTCTGCTGAGACACTGAGAGAAATGGCCATGTTGCAGGAAAGAGCAAAGGGCTCGGGGTCAGGCATGACTAGCGGGTATGTAATCAGACATAGAGCGAAACTTGACACTAGCAGCCATGTGCGGTTAAACATAACCAATTCTATGAGAAAAAATTTGATAATTGCTAAATTAATTAAACAGGTAATGCTGTAGATTACAGCCTGCAAATCACAGAGCAAGTTTACTGAATTTAGAATGTTTAATGAATGTACAGATACAGTTTTTGTTTTGTAATAATAGTGCACCTAAAGGGAACATACATGTAAATATAAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42182
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044719 None None 283 None 8
ENSDART00000074061 None None 589 None 13
ENSDART00000074064 None None 501 None 12
ENSDART00000078720 Nonsense 132 159 5 6
ENSDART00000078721 None None 299 None 7
ENSDART00000078740 None None 291 None 10
ENSDART00000078747 None None 580 None 12
ENSDART00000078757 None None 596 None 11
ENSDART00000078759 None None 649 None 12
ENSDART00000126467 None None 646 None 14
ENSDART00000129841 None None 350 None 11
ENSDART00000130101 None None 200 None 5
ENSDART00000130424 None None 588 None 13
ENSDART00000130957 None None 264 None 7
ENSDART00000131856 None None 246 None 10
ENSDART00000131870 None None 649 None 13
ENSDART00000133065 None None 227 None 7
ENSDART00000136863 None None 251 None 8
ENSDART00000137220 None None 247 None 8
ENSDART00000139218 None None 243 None 8
ENSDART00000147348 None None 244 None 8
Genomic Location (Zv9):
Chromosome 13 (position 22657795)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 22387133
GRCz11 13 22517583
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAGTTAGTAACAGCCTCCTGGCATAGCATTGTAGTGCTCTGTGTGGTATA[C/A]ATGCATGGAATTGTTTGGAACTGCCTTTGTGGTGTCTTATCAACAATAAA
Long Flanking Sequence:
TCGTATAAGTTCATAAATGAATTATCAAGATGGATATTTACATGACATACTATAGTTGGAGTATTTTGAGATCAAAACATTGTATAATAATCTCTCATCAAATTTGAGTGAAAGGGACAAAAGTTATTAGTGTTGTATTACCTTAACCGTACGTTTCACATGCAAACCACTGTGGAATATGTTTATAGGTCCTACATTGTTGCTGTTTTGCACCAATCTAGTCAGAGTCAGAGTGGATAACCTGGGGAAAATGGGAAATGTTTGTCAACTAATTATTTTACAGTTTGGCTCTCAGTACTGTCACCTTTAGAATACATCTTATAAGATTCCACACATTGAGAAGCATTCATCAGCACAATGCTTCACTGTTAAACTTAAAATGAGTTGCTAACCAATGCACTTGTTTCTTTTTCCTTTTGCCCCTTGTAGGTTATTACCCACGCTCCTGCCAAGTTAGTAACAGCCTCCTGGCATAGCATTGTAGTGCTCTGTGTGGTATA[C/A]ATGCATGGAATTGTTTGGAACTGCCTTTGTGGTGTCTTATCAACAATAAAGTGTGGTTAGTGAGATTTGTCTTCCTGTGCAAACAGAGCTTGCTTTAATGGTCCACTAATGCTTAATGTAAACCTATACTACAACACAGTGAAACAGAATCTGTGCTGGGTATATATAAACGTACTGCTTGGGTATATGTATTTATGAGGAACCTAGCACTGTGATGTTGTGTGTGAGTGTGTTTCAGGAGGATAGAGGTTTGCTTTGCTTAGTGTAGAGAATGTGTTTGTCGTAATTTCGTTTGTGACAATGTTTTTAGTGTTTGGGTTGGGAATCAAAAATTGGTTCTTATGCTGAATTCACACCATGGTGAAATTGATGGATTTACAGATAGAATACAGCTTTTACAACTTAATTTCAAACTGCAATTATATGTGGTTTGCAATCCATTTTAAATACTTTTTTTTTTTAGATTGGGTTGTGCACAGCTTTGTTGCATATGCTACAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42183
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044719 Nonsense 238 283 6 8
ENSDART00000074061 None None 589 None 13
ENSDART00000074064 None None 501 None 12
ENSDART00000078720 None None 159 6 6
ENSDART00000078721 Nonsense 254 299 5 7
ENSDART00000078740 Nonsense 246 291 8 10
ENSDART00000078747 None None 580 None 12
ENSDART00000078757 None None 596 None 11
ENSDART00000078759 None None 649 None 12
ENSDART00000126467 None None 646 None 14
ENSDART00000129841 None None 350 None 11
ENSDART00000130101 None None 200 None 5
ENSDART00000130424 None None 588 None 13
ENSDART00000130957 None None 264 None 7
ENSDART00000131856 None None 246 None 10
ENSDART00000131870 None None 649 None 13
ENSDART00000133065 None None 227 None 7
ENSDART00000136863 Nonsense 238 251 7 8
ENSDART00000137220 Nonsense 246 247 8 8
ENSDART00000139218 None None 243 None 8
ENSDART00000147348 None None 244 None 8
Genomic Location (Zv9):
Chromosome 13 (position 22663073)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 22392411
GRCz11 13 22522861
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCCAGCTGCAGTCCAAGTCCTTCCGCGTCCTCGCCCACATTACTGGAACT[G/T]AATACAGTGAGTCTGACTGTCAATTTCTTTTAGCTTGATGTTGATTTTAA
Long Flanking Sequence:
ATGCTCTGTTCTGTCATTCTTCTGGGTAAGAGATATAATTGGTTTAAAATATCCTGTCACAGTGCATTCAGTAGTAATAAGCAAGCTTCTGGCCTCAATGCCCTTGCTTTTCTGTTTATTAGCACATGTACAATATGAAGTATGCTGCATATTCAATCATTATATTTTGAAAAATCTGTATTACAAACAATCTGCTATGCATTATTACACAATAAGTTGGTGAAAAATAGTCATTTGCATCCCATTCATAACTTAAAGTGACTACTTTGCCTAACATTCCCCTGTCATGCTTGAAAAGAAAGTGTGTATTTCACAAGACCGACTCTTTCTGTGGTTGCAGTAATCTGCCAGTTAAAGAACGTGTTATAGACAGTGCTTCCCCAGTGTATCAGGCTGTCATCCCCAGTGAAATCGATCAACTTGGGCCCGCTGATTGGGCCAGAAGAGCCGCCCAGCTGCAGTCCAAGTCCTTCCGCGTCCTCGCCCACATTACTGGAACT[G/T]AATACAGTGAGTCTGACTGTCAATTTCTTTTAGCTTGATGTTGATTTTAATTCAGAGTGAAGAATCTGACATTCTCTTCTCTTCTTTTCTTTATTGCAGTGCAAGACCCTGATGAGGAAGCTCTGAGAAAGTCAAGGTAGGCATCCAGCAGCAGCATCTGGTGGCCACATATTTGAGTGGTGCTGAAGTCCTCTTAAACTGAGAAAGGCTGATGGAAAAGCTGACATATGATCAGATCTCCCAGTCAAACCCCCTTTATCGGATCTCACTCCGTGTGCTTGAGTTACACACATTAGATGCATCAGTCTAGTACATGTGAATGCATTCAGAGTAGTTGTGTAAAAAAAGAATGAAACTGCATTTTTTGTAAATTAATATTTTAAAGTATTCATACAGTGTTCAAATAGTTTATAGTTGTATATCTGAATGTTAGCATTTTTCTTAGATTTTTCTAAACTGCTATACCTGTTTTTGCAAACATATCTATCAAATTTGATATA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1447
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044719 Essential Splice Site 252 283 7 8
ENSDART00000074061 None None 589 None 13
ENSDART00000074064 None None 501 None 12
ENSDART00000078720 None None 159 None 6
ENSDART00000078721 Essential Splice Site 268 299 6 7
ENSDART00000078740 Essential Splice Site 260 291 9 10
ENSDART00000078747 None None 580 None 12
ENSDART00000078757 None None 596 None 11
ENSDART00000078759 None None 649 None 12
ENSDART00000126467 None None 646 None 14
ENSDART00000129841 None None 350 None 11
ENSDART00000130101 None None 200 None 5
ENSDART00000130424 None None 588 None 13
ENSDART00000130957 None None 264 None 7
ENSDART00000131856 None None 246 None 10
ENSDART00000131870 None None 649 None 13
ENSDART00000133065 None None 227 None 7
ENSDART00000136863 None 252 251 8 8
ENSDART00000137220 None None 247 None 8
ENSDART00000139218 None None 243 None 8
ENSDART00000147348 None None 244 None 8
Genomic Location (Zv9):
Chromosome 13 (position 22663210)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 22392548
GRCz11 13 22522998
KASP Assay ID:
554-1373.1 (used for ordering genotyping assays)
KASP Sequence:
TTCTTTATTGCAGTGCAAGACCCTGATGAGGAAGCTCTGAGAAAGTCAAG[G/A]TAGGCATCCAGCAGCAGCATCTGGTGGCCACATATTTGAGTGGTGCKGAA
Long Flanking Sequence:
AAGTATGCTGCATATTCAATCATTATATTTTGAAAAATCTGTATTACAAACAATCTGCTATGCATTATTACACAATAAGTTGGTGAAAAATAGTCATTTGCATCCCATTCATAACTTAAAGTGACTACTTTGCCTAACATTCCCCTGTCATGCTTGAAAAGAAAGTGTGTATTTCACAAGACCGACTCTTTCTGTGGTTGCAGTAATCTGCCAGTTAAAGAACGTGTTATAGACAGTGCTTCCCCAGTGTATCAGGCTGTCATCCCCAGTGAAATCGATCAACTTGGGCCCGCTGATTGGGCCAGAAGAGCCGCCCAGCTGCAGTCCAAGTCCTTCCGCGTCCTCGCCCACATTACTGGAACTGAATACAGTGAGTCTGACTGTCAATTTCTTTTAGCTTGATGTTGATTTTAATTCAGAGTGAAGAATCTGACATTCTCTTCTCTTCTTTTCTTTATTGCAGTGCAAGACCCTGATGAGGAAGCTCTGAGAAAGTCAAG[G/A]TAGGCATCCAGCAGCAGCATCTGGTGGCCACATATTTGAGTGGTGCTGAAGTCCTCTTAAACTGAGAAAGGCTGATGGAAAAGCTGACATATGATCAGATCTCCCAGTCAAACCCCCTTTATCGGATCTCACTCCGTGTGCTTGAGTTACACACATTAGATGCATCAGTCTAGTACATGTGAATGCATTCAGAGTAGTTGTGTAAAAAAAGAATGAAACTGCATTTTTTGTAAATTAATATTTTAAAGTATTCATACAGTGTTCAAATAGTTTATAGTTGTATATCTGAATGTTAGCATTTTTCTTAGATTTTTCTAAACTGCTATACCTGTTTTTGCAAACATATCTATCAAATTTGATATAAAAATAGTATAACATAAACCCATTTACCTAGAAGAGAAGTCCACATGCTTTTTTGCGACAAAATAATGTAACATTTTTCAAGTTTATTCATCAAGGAGGCCAAAATTAAAAATATTTAAACAACAAATTTAATATTT
Associated Phenotype:
Not determined