ZMP

c1d

Ensembl ID:

ENSDARG00000021112

ZFIN ID:

ZDB-GENE-041024-8

Description:

Nuclear nucleic acid-binding protein C1D [Source:UniProtKB/Swiss-Prot;Acc:Q5XJ97]

Human Orthologue:

C1D

Human Description:

C1D nuclear receptor corepressor [Source:HGNC Symbol;Acc:29911]

Mouse Orthologue:

C1d

Mouse Description:

C1D nuclear receptor co-repressor Gene [Source:MGI Symbol;Acc:MGI:1927354]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa11551	Nonsense	Available for shipment	Available now
sa42128	Essential Splice Site	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa11551

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000023803	Nonsense	85	148	4	5

Genomic Location (Zv9):

Chromosome 13 (position 4317669)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	13	4534499
GRCz11	13	4663085

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

TAGTGTATCTTGTGACACAAGGAGTCAATCCGAAAKACCATCCAATYAAA[C/T]AAGAACTGGTAAGAGAATWCTGTCRGTTTACTTCAAACNTTTTTTTTCTK

Long Flanking Sequence:

TTTAGGCCAAAGTTTGCAGGAATCATGAATTATCTTAAATGGTTTTTATTAATATATTCTTATGTTACCATTCAGCTGACAGACCATGGCTGATGATGCTGCAGTAGAGGATTATCCCACTGAAATCGAAGACAACCTGAATGATTTCGACTCTTCTTTGAGCTCTGTCCAGAATATGGTCCAGACACTGGTGTCTGTATCCAGAAGTGACCGTCTGCTTAAAGTATGTATAAAATGTTTATATGAAAAGCTGATAAATGAAAATGGCTTAACTATCATGTTTAACCTGTTTTTTACTTCATAAAGTTGGATCCTCTTGAACAAGCTAAACTGGATCTGATGTCGGCATACGCCCTCAACTCAATGTTCTGGAGTAAGGTTCTACACCCTCTTTTATTTGTCTTGTAAAATTGAGGTTAGCATGATATGACAAGTTTCACTTTTTCTTTCTAGTGTATCTTGTGACACAAGGAGTCAATCCGAAAGACCATCCAATCAAA[C/T]AAGAACTGGTAAGAGAATACTGTCGGTTTACTTCAAACGTTTTTTTTCTGTGACAATGTCAGACTACAATCTCAAAGTCTATGGCGCATAACTCAAATGTAAAGTGGAACTCTATTTAAAAAAATTAGAGTTTTTAATTTTTAAATTAGTGGCTTAGTGGTTAACATTGTCGCCTCACAGCAAGTAAGTCGCTGGTTCGAGTCCCGGCTGGACCAGTTGGCATTTCTGTGTGGAGTTTGTATGTTCTCCCTGTGTTGGCGTGGGTTTTCTCTGGGTGCTCTGGTTTCTCCGAGTCCAAACACATGCAAACTTTTTACGTACAGATATAGTAAAGATCCAGGTTCCCTCTCATCAAATATTTATTACATCACAGATTTATACGTTTACATATTATACATGTATTTAAACATTTATTATTATATACGTTAGCTCCCTTATATCGCTTAACGGTTTAAAACCAAGAGCATACGCTATGATAAAGGTACATTTCGCACAAATGT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa42128

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > C

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000023803	Essential Splice Site	87	148	4	5

Genomic Location (Zv9):

Chromosome 13 (position 4317659)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	13	4534489
GRCz11	13	4663075

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TGTGACACAAGGAGTCAATCCGAAAGACCATCCAATCAAACAAGAACTGG[T/C]AAGAGAATACTGTCGGTTTACTTCAAACGTTTTTTTTCTGTGACAATGTC

Long Flanking Sequence:

AGTTTGCAGGAATCATGAATTATCTTAAATGGTTTTTATTAATATATTCTTATGTTACCATTCAGCTGACAGACCATGGCTGATGATGCTGCAGTAGAGGATTATCCCACTGAAATCGAAGACAACCTGAATGATTTCGACTCTTCTTTGAGCTCTGTCCAGAATATGGTCCAGACACTGGTGTCTGTATCCAGAAGTGACCGTCTGCTTAAAGTATGTATAAAATGTTTATATGAAAAGCTGATAAATGAAAATGGCTTAACTATCATGTTTAACCTGTTTTTTACTTCATAAAGTTGGATCCTCTTGAACAAGCTAAACTGGATCTGATGTCGGCATACGCCCTCAACTCAATGTTCTGGAGTAAGGTTCTACACCCTCTTTTATTTGTCTTGTAAAATTGAGGTTAGCATGATATGACAAGTTTCACTTTTTCTTTCTAGTGTATCTTGTGACACAAGGAGTCAATCCGAAAGACCATCCAATCAAACAAGAACTGG[T/C]AAGAGAATACTGTCGGTTTACTTCAAACGTTTTTTTTCTGTGACAATGTCAGACTACAATCTCAAAGTCTATGGCGCATAACTCAAATGTAAAGTGGAACTCTATTTAAAAAAATTAGAGTTTTTAATTTTTAAATTAGTGGCTTAGTGGTTAACATTGTCGCCTCACAGCAAGTAAGTCGCTGGTTCGAGTCCCGGCTGGACCAGTTGGCATTTCTGTGTGGAGTTTGTATGTTCTCCCTGTGTTGGCGTGGGTTTTCTCTGGGTGCTCTGGTTTCTCCGAGTCCAAACACATGCAAACTTTTTACGTACAGATATAGTAAAGATCCAGGTTCCCTCTCATCAAATATTTATTACATCACAGATTTATACGTTTACATATTATACATGTATTTAAACATTTATTATTATATACGTTAGCTCCCTTATATCGCTTAACGGTTTAAAACCAAGAGCATACGCTATGATAAAGGTACATTTCGCACAAATGTAAACAGCCTT

Associated Phenotype:

Not determined