ZMP

si:dkey-76p14.4

Ensembl ID:

ENSDARG00000025847

ZFIN ID:

ZDB-GENE-040724-33

Description:

transcription factor SOX-12 [Source:RefSeq peptide;Acc:NP_001025449]

Human Orthologue:

SOX12

Human Description:

SRY (sex determining region Y)-box 12 [Source:HGNC Symbol;Acc:11198]

Mouse Orthologue:

Sox12

Mouse Description:

SRY-box containing gene 12 Gene [Source:MGI Symbol;Acc:MGI:98360]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa41833	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa38840	Nonsense	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa41833

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > T

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000065972	None	None	355	None	1
ENSDART00000136827	Essential Splice Site	None	355	2	2

Genomic Location (Zv9):

Chromosome 11 (position 25124883)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	11	23953710
GRCz11	11	24191326

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TAACAAACAAGTTTATAAGAGGTCACTGAAGGCATATCTGTCCCTATTTC[A/T]GGATAAAAGCAGGAATTGGTGAGTTGCTGCATCTTAGAGTGTCTCGTCAT

Long Flanking Sequence:

ACAGAGGAAGAAAACAGCAGGCAGACGCTGGACAGCTTTTTTTTTGACTTGCACCACAACTGCTACAGCAGAGGAAATGCTTATATGAAGAGAAAAAGTAATTGTGCATAGTAAGCAGAAGCTGTCTTCGCTTGTATTGTAAGTACCAAACATTTACCTCAAAATTACATATATAATTATATGTGTACATATATATATATATATAGTAACAAGAGTAGCAATATTAATGTAGTACAGTGATAGTATATTTAAAAAGTAGTACTATAATAAAGTAATATTAAAACTTATCAGAAATAAATGTTTACATACATTGTGTGCATTTTTATAAGTTTACATATATTTTTGTTATCATTAATATTATCATAAACAATTATTAAACACTTGGTACTGTGTATAACAACACACAACACATATTACATCTTAAGAAATCAGCACAATGTCATTTATATTTAACAAACAAGTTTATAAGAGGTCACTGAAGGCATATCTGTCCCTATTTC[A/T]GGATAAAAGCAGGAATTGGTGAGTTGCTGCATCTTAGAGTGTCTCGTCATGGATGACTCTAGGGAACCTACTGAATAGATCTCAGCGCTGCATCATGGTTCAGCAAAGAACCCACAAATACTCGTCAGTCATGGACAGCAATTCAAGCAGAGAGGTGTTTGTGGGACTGGCGGCTGAGGACGATGCTGAGGTGTTTGGACATGTACCTTCTAACAAAGACCCCAACTGGTGCAAAACTCCAACTGGGCACATCAAAAGACCAATGAACGCTTTTATGGTCTGGTCTCAGATTGAAAGACGGAAGATCATGGAGCAATGGCCTGATATGCACAATGCTGAGATTTCAAAGCGCCTTGGGAAACGCTGGAAACTACTGCCTGACTATGAGAAGATACCCTTTATCAAAGAGGCCGAAAGACTGCGTCTAAAGCACATGGCTGACTATCCTGACTACAAGTACCGGCCCAGGAAGAAAAGCAAGGGCTCAACCCCTGTCAAAC

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa38840

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000065972	Nonsense	92	355	1	1
ENSDART00000136827	Nonsense	92	355	2	2

Genomic Location (Zv9):

Chromosome 11 (position 25124515)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	11	23953342
GRCz11	11	24190958

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

GGCCTGATATGCACAATGCTGAGATTTCAAAGCGCCTTGGGAAACGCTGG[A/T]AACTACTGCCTGACTATGAGAAGATACCCTTTATCAAAGAGGCCGAAAGA

Long Flanking Sequence:

AATTATTAAACACTTGGTACTGTGTATAACAACACACAACACATATTACATCTTAAGAAATCAGCACAATGTCATTTATATTTAACAAACAAGTTTATAAGAGGTCACTGAAGGCATATCTGTCCCTATTTCAGGATAAAAGCAGGAATTGGTGAGTTGCTGCATCTTAGAGTGTCTCGTCATGGATGACTCTAGGGAACCTACTGAATAGATCTCAGCGCTGCATCATGGTTCAGCAAAGAACCCACAAATACTCGTCAGTCATGGACAGCAATTCAAGCAGAGAGGTGTTTGTGGGACTGGCGGCTGAGGACGATGCTGAGGTGTTTGGACATGTACCTTCTAACAAAGACCCCAACTGGTGCAAAACTCCAACTGGGCACATCAAAAGACCAATGAACGCTTTTATGGTCTGGTCTCAGATTGAAAGACGGAAGATCATGGAGCAATGGCCTGATATGCACAATGCTGAGATTTCAAAGCGCCTTGGGAAACGCTGG[A/T]AACTACTGCCTGACTATGAGAAGATACCCTTTATCAAAGAGGCCGAAAGACTGCGTCTAAAGCACATGGCTGACTATCCTGACTACAAGTACCGGCCCAGGAAGAAAAGCAAGGGCTCAACCCCTGTCAAACTTGGCGAGAAGTTGCCTATGAAATCCAGCAAGCCCCTTCCAGGAAGATCTTCCGGGCTCTCCTGCAAAGGGCTTAAGATCAAACCTGCTTCTTCAAAGCATAAAATGAACTTTAGTAGCAATAAATACAAGAGCTACAGTGAGAGCATGAGCGACGACGACACCATGGATGTAAACCTAGAAAGTCCAGTGACTCAGCAAGACGATCGCAACACGTCAAGTCACTTTGTCCTTCACCAGCAGGCTACTGTTCAATCTGAGGACCAGCAACCAATTCCTGAGCTCAGAGTGAAAGTACCCATCTCTCAAACCAGCAGCATCCAGAGTCTCTCCTCGGACAGCGAATGCCAGGCTTTCCCAGAGTCCACG

Associated Phenotype:

Not determined