ZMP
smg6
Ensembl ID:
ZFIN ID:
Description:
SMG6 homolog nonsense mediated mRNA decay factor (C. elegans)cds [Source:UniProtKB/TrEMBL;Acc:C5J7W9
Human Orthologue:
SMG6
Human Description:
Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:HGNC Symbol;Acc:17809]
Mouse Orthologue:
Smg6
Mouse Description:
Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) Gene [Source:MGI Symbol;Acc:MGI:2144
Alleles
There is 1 allele of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa17851 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa17851
Status:
Available for shipment
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For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000108897 | Essential Splice Site | 956 | 1381 | 17 | 25 |
ENSDART00000135950 | Essential Splice Site | 1113 | 1544 | 11 | 19 |
Genomic Location (Zv9):
Chromosome 10 (position 36626815)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 10 | 35658577 |
GRCz11 | 10 | 35602437 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GGTCTCCTTGTCCAGCGCTGTACTGAACTCCTGAAGGAAACACCTACTGG[T/G]GAGAAAACTACACATTTGCTGAAAYGAAAAAATGTATATACATTAATATC
Long Flanking Sequence:
ATAATAATGATCAAATATGTATTTATTGAATGTTTTGAATTTATGACAACTCTTACTTGCTGGTAATTACCACAGAAATTAATTTAGATTATTTGAGTTTGAGCATTGATTGAGAATATTCTCATTTGCATGATGTGTCATGATTGGTCTTCAGGATGGAGAGTTTCCCTGCTGTAGCCAATCGGGTGTTACTGGAGTTTCGCGCCCTCCTCCAGCATAGCCCCTCCCCCCTCGGGAGCACACGCATGCTGCAGATCATCACCATTAACATGTTCACCATCTATAACGCACAGATCAGAGGTAAAAACTTTACCAGTTCCATAGATCCTGTCCAGTTCATTGACAATCTTTCCTGTTTCAATTTGCCATTTTTTTTTATCAGCCAAAGGACAGGGTGAAACTAGGTCTGCATTAGAAGAGCAGGCCATATCTCTGGGTTTAGCTATGTTTGGTCTCCTTGTCCAGCGCTGTACTGAACTCCTGAAGGAAACACCTACTGG[T/G]GAGAAAACTACACATTTGCTGAAATGAAAAAATGTATATACATTAATATCACAAAACACACCAAAAGTTTAATCTGCATGCCAGATAGACATAGTTTTAAAAAAAAAAATCTGTTACACATTTTTTTACACTTTTTTTTCTTAAAGTTAAAGTTGCTTTAACTGTGAGTGTAGCTTGAGTCCACTTAACTTCAGCTACAGTATGTGTTGACATGTGGCTTTAGGATGCATTTTTTCAGAGCAATCATTTGGGCAATGCTAAATACATGTTGGTGTCACGTTGGCACAGTGGGTAGCACAATAATGACATGAAGCTTGAAACCGAGGTGGAGTGTGACCATATAAGAGGGAAGGGCCTCAGAGAAATCCATCTATATATATTTTTTTAATATTATCAACATAAACTGATAAATGACGTGTTATTTACATTAATTAATTTAGCAGAAGCTTTTATACAAAGCAACTTACAAAACAAGATAAAAGAAACACTTCAAATTATCA
Associated Phenotype:
Not determined