Busch Lab

ZMP

pcdh1a3

Ensembl ID:
ENSDARG00000091924
ZFIN ID:
ZDB-GENE-050202-3
Description:
protocadherin 1 alpha 3 [Source:RefSeq peptide;Acc:NP_001019268]
Human Orthologues:
PCDHA1, PCDHA10, PCDHA11, PCDHA12, PCDHA13, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9
Human Descriptions:
protocadherin alpha 1 [Source:HGNC Symbol;Acc:8663]
protocadherin alpha 10 [Source:HGNC Symbol;Acc:8664]
protocadherin alpha 11 [Source:HGNC Symbol;Acc:8665]
protocadherin alpha 12 [Source:HGNC Symbol;Acc:8666]
protocadherin alpha 13 [Source:HGNC Symbol;Acc:8667]
protocadherin alpha 2 [Source:HGNC Symbol;Acc:8668]
protocadherin alpha 3 [Source:HGNC Symbol;Acc:8669]
protocadherin alpha 4 [Source:HGNC Symbol;Acc:8670]
protocadherin alpha 5 [Source:HGNC Symbol;Acc:8671]
protocadherin alpha 6 [Source:HGNC Symbol;Acc:8672]
protocadherin alpha 7 [Source:HGNC Symbol;Acc:8673]
protocadherin alpha 8 [Source:HGNC Symbol;Acc:8674]
protocadherin alpha 9 [Source:HGNC Symbol;Acc:8675]
Mouse Orthologue:
AC020968.2
Mouse Description:
protocadherin alpha-3 [Source:RefSeq peptide;Acc:NP_619603]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa41643 Nonsense Mutation detected in F1 DNA Not yet available
sa41644 Nonsense Mutation detected in F1 DNA Not yet available
sa34891 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa41643
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000108584 Nonsense 171 787 1 4
Genomic Location (Zv9):
Chromosome 10 (position 21641415)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 21602829
GRCz11 10 21560210
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GATGTCGGCAGTAATTCACTGAAAGACTACAAACTCAGTTCAAATGAATA[T/A]TTTTCATTAGATGTTCATAGCGAGCAACAAATTGTATCTGCAGAATTAGT
Long Flanking Sequence:
CAATCTTACGGTTTATGGATTGTTTTATTTCTGTCTTTATGGGAATCGTCGCTTGGCCAGATTGTCTACTCAGTCTCGGAGGAGGTAAATAGAGGAACCGTGATCGGGAATATAGCAAAGGACCTCAAGATGAGTGCTCAGGAACTAGAATCCCGCATGTTTCAGATTATGCCTGGATCAAATGCAAAGTATTTTGATGTAAATGTGAAAACGGGGTCGCTGTTTGTCAAAGACAGGATTGATCGTGAGGAGTTGTGTGGCGTTAATCAGAAATGTGCACTGAATTTAGAGGCTCTTGCTCAGAATCCTCACAGACTTTATCGACTTGAAATTGTAATAGTGGATGTGAACGACAATGCTCCGTTTTTTCCAGAGAGCACATATCCCCTAAATGTTACAGAGATCGCAAATGAGGGGGACAGATTTCCTTTGCCATTTGCCAAAGATTTAGATGTCGGCAGTAATTCACTGAAAGACTACAAACTCAGTTCAAATGAATA[T/A]TTTTCATTAGATGTTCATAGCGAGCAACAAATTGTATCTGCAGAATTAGTCCTACAAAAAACATTAGACAGAGAAAAGCAAGCCGTTATTCACTTAATTTTAACTGCTGTTGATGGAGGGAAACCTCCTAAATCTGGAACCTTGAGTATTATTGTTGAGGTTATGGATGTAAACGATAATAAACCTATTTTCAGCAAATCTTTATACAAAGTTAAAGTGAAGGAAAACAGCCAATTTGGAGCTAAAATCATTACCATTTCTGCCAGTGATTTGGATGAGGGCACTAATGGGCAAATTCAATATTCATTTCTTGGAAATACCGATGAACAAAACCTTTTTACAATAAATTCTAATTCAGGGGTAATTGTTGTTCAAGGTCAAATTGATTATGAGGAGAACCCTGCCATTCAACTCCGTGTTCAGGCTAAAGATAAAGGCAGTCCTCCTAAAAGCACTCACTGTAAAGTTTTAATAGAAGTTGTGGATGAAAATGATAATGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa41644
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000108584 Nonsense 271 787 1 4
Genomic Location (Zv9):
Chromosome 10 (position 21641713)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 21603127
GRCz11 10 21560508
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCATTACCATTTCTGCCAGTGATTTGGATGAGGGCACTAATGGGCAAATT[C/T]AATATTCATTTCTTGGAAATACCGATGAACAAAACCTTTTTACAATAAAT
Long Flanking Sequence:
CTCAGAATCCTCACAGACTTTATCGACTTGAAATTGTAATAGTGGATGTGAACGACAATGCTCCGTTTTTTCCAGAGAGCACATATCCCCTAAATGTTACAGAGATCGCAAATGAGGGGGACAGATTTCCTTTGCCATTTGCCAAAGATTTAGATGTCGGCAGTAATTCACTGAAAGACTACAAACTCAGTTCAAATGAATATTTTTCATTAGATGTTCATAGCGAGCAACAAATTGTATCTGCAGAATTAGTCCTACAAAAAACATTAGACAGAGAAAAGCAAGCCGTTATTCACTTAATTTTAACTGCTGTTGATGGAGGGAAACCTCCTAAATCTGGAACCTTGAGTATTATTGTTGAGGTTATGGATGTAAACGATAATAAACCTATTTTCAGCAAATCTTTATACAAAGTTAAAGTGAAGGAAAACAGCCAATTTGGAGCTAAAATCATTACCATTTCTGCCAGTGATTTGGATGAGGGCACTAATGGGCAAATT[C/T]AATATTCATTTCTTGGAAATACCGATGAACAAAACCTTTTTACAATAAATTCTAATTCAGGGGTAATTGTTGTTCAAGGTCAAATTGATTATGAGGAGAACCCTGCCATTCAACTCCGTGTTCAGGCTAAAGATAAAGGCAGTCCTCCTAAAAGCACTCACTGTAAAGTTTTAATAGAAGTTGTGGATGAAAATGATAATGCGCCAGAAATAGTTACAACACCTCTGATAGAAAGTGTGAAAGAGGACGCAAAGCCCGGAACTGCCGTAGCTTTAGTCACAGTGTCTGATAAAGATGGGGGTAAAAATGGCATTGTACAATGTGCTCTGAAAGGTTTGTTTCCTTTCAAACTAGAGACATCATACAATAATCATTATTCTCTAGTGGTAGATGGACCTCTGGACAGAGAGAGTGTTTCTCAGTATAACATCACTATTACAGCTGCAGATGAAGGAACTCCGCCTCTTTCCAGCAGCACAGTTATAACTGTTCATGTCTCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa34891
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000108584 Nonsense 362 787 1 4
Genomic Location (Zv9):
Chromosome 10 (position 21641987)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 21603401
GRCz11 10 21560782
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTGATAGAAAGTGTGAAAGAGGACGCAAAGCCCGGAACTGCCGTAGCTT[T/A]AGTCACAGTGTCTGATAAAGATGGGGGTAAAAATGGCATTGTACAATGTG
Long Flanking Sequence:
AGAAAAGCAAGCCGTTATTCACTTAATTTTAACTGCTGTTGATGGAGGGAAACCTCCTAAATCTGGAACCTTGAGTATTATTGTTGAGGTTATGGATGTAAACGATAATAAACCTATTTTCAGCAAATCTTTATACAAAGTTAAAGTGAAGGAAAACAGCCAATTTGGAGCTAAAATCATTACCATTTCTGCCAGTGATTTGGATGAGGGCACTAATGGGCAAATTCAATATTCATTTCTTGGAAATACCGATGAACAAAACCTTTTTACAATAAATTCTAATTCAGGGGTAATTGTTGTTCAAGGTCAAATTGATTATGAGGAGAACCCTGCCATTCAACTCCGTGTTCAGGCTAAAGATAAAGGCAGTCCTCCTAAAAGCACTCACTGTAAAGTTTTAATAGAAGTTGTGGATGAAAATGATAATGCGCCAGAAATAGTTACAACACCTCTGATAGAAAGTGTGAAAGAGGACGCAAAGCCCGGAACTGCCGTAGCTT[T/A]AGTCACAGTGTCTGATAAAGATGGGGGTAAAAATGGCATTGTACAATGTGCTCTGAAAGGTTTGTTTCCTTTCAAACTAGAGACATCATACAATAATCATTATTCTCTAGTGGTAGATGGACCTCTGGACAGAGAGAGTGTTTCTCAGTATAACATCACTATTACAGCTGCAGATGAAGGAACTCCGCCTCTTTCCAGCAGCACAGTTATAACTGTTCATGTCTCTGATGTTAATGACAATGCTCCACATTTCCCAGCACCCGTTATTAACGCTTTTCTAAGTGAGAATAGTCAAGCTGGAGGTCTCGTGACAAAAGTGACTGCTGATGATTCAGACACTGGTGAGAACGCAGAACTTTCATATTCACTGTTAGACAGTTCCAGCTCCAGCATTCCTGTAACAACACTGATAAATATCAACTCTTTAAGTGGAGAAATATTCAGTTTGCAATCATTTAATCACGAAGAGACCAAAAGATTTCAATTTCAAGTTACAGCAA
Associated Phenotype:
Not determined