Busch Lab

ZMP

si:ch211-122m3.1

Ensembl ID:
ENSDARG00000067824
ZFIN ID:
ZDB-GENE-091113-51
Human Orthologues:
AL953854.2, CNTNAP3, CNTNAP3B, CNTNAP4, CNTNAP5
Human Descriptions:
Novel protein similar to contactin associated protein-like 3 (CNTNAP3) [Source:UniProtKB/TrEMBL;Acc:
contactin associated protein-like 3 [Source:HGNC Symbol;Acc:13834]
contactin associated protein-like 3B [Source:HGNC Symbol;Acc:32035]
contactin associated protein-like 4 [Source:HGNC Symbol;Acc:18747]
contactin associated protein-like 5 [Source:HGNC Symbol;Acc:18748]
Mouse Orthologues:
Cntnap3, Cntnap4, Cntnap5a, Cntnap5b, Cntnap5c
Mouse Descriptions:
contactin associated protein-like 3 Gene [Source:MGI Symbol;Acc:MGI:3588199]
contactin associated protein-like 4 Gene [Source:MGI Symbol;Acc:MGI:2183572]
contactin associated protein-like 5A Gene [Source:MGI Symbol;Acc:MGI:3643623]
contactin associated protein-like 5B Gene [Source:MGI Symbol;Acc:MGI:3664583]
contactin associated protein-like 5C Gene [Source:MGI Symbol;Acc:MGI:3646013]

Alleles

There are 9 alleles of this gene:

Allele Name Consequence Status Availability
sa7338 Missense Mutation detected in F1 DNA Not yet available
sa15180 Essential Splice Site Available for shipment Available now
sa45385 Nonsense Mutation detected in F1 DNA Not yet available
sa34806 Nonsense Mutation detected in F1 DNA Not yet available
sa2546 Essential Splice Site F2 line generated Not yet available
sa41568 Nonsense Mutation detected in F1 DNA Not yet available
sa16329 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa7338
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000097695 Missense 44 1300 2 24
ENSDART00000136363 Missense 15 1271 1 23

The following transcripts of ENSDARG00000067824 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 10 (position 2260731)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 2206610
GRCz11 10 2234324
KASP Assay ID:
554-4363.1 (used for ordering genotyping assays)
KASP Sequence:
TGCAGAGAGCTGTGATTCTCCGCTGGTGTCCGGTTTGCCTCAGTCGGCCT[T/G]CACTAGTTCATCAGAGCTGTCGARCAGTCACGGGCCGGGATTCGCCAAAC
Long Flanking Sequence:
GTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGGTGGGTGGGTGGGTGGGTGGGTGAATGAGTTCTGATGTGAATGTATTTGAAACAGTACAGTGGTGTGTCCTAAAGCTGACTTTTCAGCATCATTTCTCCAGTCCTCGTTGTCAGAAATCCTTCTAATATGCTGATTTGGAGATCAGGGTTCATTACTGATTATCGTCTATGACTAAATAAACGTTGTGCAGCTTCATATTTTTGTGTAACGTTTATGACGTTTTTTCCAGGATCAATAAAAAGCTCAAATGAACAGCCTTTATGTTAAATAGATTTTTGTGTCGAACATCATGATATCATGATCTTTTGCAGCTTATGATCCATTTGATGCATTGTGTGTGTATTCTGCAGCTCTGTGTGTCAGTGTCTGTCTAATAAGTGCTGATGTGTGTTTGCAGAGAGCTGTGATTCTCCGCTGGTGTCCGGTTTGCCTCAGTCGGCCT[T/G]CACTAGTTCATCAGAGCTGTCGAGCAGTCACGGGCCGGGATTCGCCAAACTCAACCGGAGAGACGGTAATTAAACACCTTCAATCATTATTCACAGCCAGAGAGAGTTCAGCTTCCGCTTCATCATTTGACCTTCAGCTGATATTTCATGATGAAAATCACCACCACGGTGTCAGGCGGTTGATGGCTGATGGTTGGCAGGCTGTTGCTAGGTGGTTGCCAGGGTAACTTGATATGACAATAAAAAAAAAAAAGCGTTCTCAATAGGGATGCAGGACGTTATCACATTGTCAGATAGTTTGATCAGTAGGGGCTGGAAAGGTGAACATCTCCAATCAGTCTGATATATGACATTGATGTGAATATTCCGTGTTGATAAGATGACGTTGATTATGAGCCTGCAGAACTGTTGATTATGAACAATAAGGTCATGTCAACAGTGTGGTCATTCTGCTTTTGTCATTATGAAGATTAACTGTTGTATATGGAACGACATGGCTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15180
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000097695 Essential Splice Site 130 1300 3 24
ENSDART00000136363 Essential Splice Site 101 1271 2 23

The following transcripts of ENSDARG00000067824 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 10 (position 2281587)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 2227466
GRCz11 10 2255180
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTGACAYGGGACACAACTGGAGACCGTACCGCCAGGAAGACAGCATAGGG[G/T]TAAGCTTTCAATYCCCTYGGATNGAGAAAAACATGCMTTGGCCTGAKAAA
Long Flanking Sequence:
AATAAATACATAATATGAAATATATTAAAACATATTTAACAAATATTTAATAAAAGACACATACATATATTGATAAGTGGTCATATTAAATAGATGTATGTTTTATATATTTATTTTTTTACTTTATCATATTATTACAATCAAGAATACATAATAATATGTGTCATATTGACTGAATTGTTTCATGTTTAATTTATCTAAATTTGCTAAATCTAATAATTTAACTTAATTCCTTCATGTTCCAACACAAATCAATTGTGTGGATTCCGGCATTTCTTACAGTGCATGTGTGTGTGTGTCGTGCAGGTGCTGGGGGCTGGTCTCCGCTGGACTCTAATAAGTATCAGTGGCTGGAGATCAAGCTGGAGCAGCGCACTGAGATTACGGGGGTCTCCAGCCAGGGCCGATACGGCAGCTCAGACTGGGTCACTCGCTACCTCCTCATGTTCAGTGACACGGGACACAACTGGAGACCGTACCGCCAGGAAGACAGCATAGGG[G/T]TAAGCTTTCAATCCCCTCGGATGGAGAAAAACATGCATTGGCCTGATAAAACACCACATAGATTTTAGACGTTTTTAGGCCTGTGAGAAATCAACAACATCACACGAATGGTTGTTTTCCGGCGGATGTTGATGTGGTTCGGGTTTCTCCTTGAATGTGGTATCCACAATCAGATTAAAGACAAGTGGATTATATTATTTATTGTGTATTTAGTTTTTTCTGTATGTGTAAATATATACATGTACCGTGTCATATCTCTCAGCTCTTACTGTAATTTTTCTGGGGTCAATCACAGGTCATTATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATAAGATGTATTAACTAGTTAAGGAGTTTTTTTCAGCACAGATCAGACATCAATGTCCCATAATGCAATTTAAAAGCATTAAAAACTAATGTTAAGCTTTTTTTAAAATTGTAATTGTTTCATCTTTTTACATTTGCTATTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa45385
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000097695 Nonsense 408 1300 8 24
ENSDART00000136363 Nonsense 379 1271 7 23

The following transcripts of ENSDARG00000067824 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 10 (position 2315410)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 2261289
GRCz11 10 2289003
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGGAATTCAGAACGTGGAATAAAGCGGGTCTGCTGATGACCTTTGACCTT[C/T]AGCAGAACGCAGGAACACTGTGGCTTTATCTGAGCGAAGCCAAAGCACGA
Long Flanking Sequence:
GGAAAAAAGTTCACAATAACAGGTCACCGGAAGTTTATCAGTATGAGGAAAAACACTAGCTTGGCATATACCCTATTACAGTAGTAATTAAATCAAACATGCACTGTAAAAATGTTGGGGTCCAATTCCTTCATGTTGTCCTAACTTGATTAAGTTAACTTAATAGATTGAAATGAACTTAATAAATGAAATTGCAAGAATTGTGTTGATTTAGCTTATTTTAAATGAGTAGTTTGAACTGTAGTTTGAGTGTGTAACAACAAATATTCAATTCTGTGTTAACATTTAGCAGTTTTATAGCAGCTTTTTTATCTTGTGTTGCTCTTTTTTTGTAGGGAAACGTCAGCTTTGCCTGTTCTGAGTCTATTGAAGTGCCAGTGACGTTCGCCGGTCCTAGAAGCTTCCTGGCCGTGCCGTGGGTCTCCGGTGGAGAAAGTGTGTCGGTCAGCCTGGAATTCAGAACGTGGAATAAAGCGGGTCTGCTGATGACCTTTGACCTT[C/T]AGCAGAACGCAGGAACACTGTGGCTTTATCTGAGCGAAGCCAAAGCACGACTGCAGATCCAGAAGAGCGGCCGGATTCTGACCGACGTCACAGCAGGTTATAGGATGCAAAACATAAATGTACACAACTATAGAGTTGAAGTCAGAATTATCAGCCCTCCTGAATTATTAGCCCCCCTGTATGTTTTTCCCACAAATTTTGGTTTAACGGAAAGAAGATATTTTCAGCACTTTTGTAAACATAATAGTTTTAATAATTCATCTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTAAATAATAAGTGAGAAGTATTTTTCAAGACACTTCTATACAGCTTGAAATGACATTTAAAGGCTGAACTAGCTTAATTAGGTTAACTAGGCAGGTTAGGGTAATTAGGCAAGTCATTGTATAATGATGGTTTGCTCTGTAGACTTATTAGGGGCTAATAATGTCATCCTTAATATGGTGTTTAAAAAATGAATAACTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa34806
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000097695 Nonsense 417 1300 8 24
ENSDART00000136363 Nonsense 388 1271 7 23

The following transcripts of ENSDARG00000067824 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 10 (position 2315439)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 2261318
GRCz11 10 2289032
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTGCTGATGACCTTTGACCTTCAGCAGAACGCAGGAACACTGTGGCTTTA[T/A]CTGAGCGAAGCCAAAGCACGACTGCAGATCCAGAAGAGCGGCCGGATTCT
Long Flanking Sequence:
GAAGTTTATCAGTATGAGGAAAAACACTAGCTTGGCATATACCCTATTACAGTAGTAATTAAATCAAACATGCACTGTAAAAATGTTGGGGTCCAATTCCTTCATGTTGTCCTAACTTGATTAAGTTAACTTAATAGATTGAAATGAACTTAATAAATGAAATTGCAAGAATTGTGTTGATTTAGCTTATTTTAAATGAGTAGTTTGAACTGTAGTTTGAGTGTGTAACAACAAATATTCAATTCTGTGTTAACATTTAGCAGTTTTATAGCAGCTTTTTTATCTTGTGTTGCTCTTTTTTTGTAGGGAAACGTCAGCTTTGCCTGTTCTGAGTCTATTGAAGTGCCAGTGACGTTCGCCGGTCCTAGAAGCTTCCTGGCCGTGCCGTGGGTCTCCGGTGGAGAAAGTGTGTCGGTCAGCCTGGAATTCAGAACGTGGAATAAAGCGGGTCTGCTGATGACCTTTGACCTTCAGCAGAACGCAGGAACACTGTGGCTTTA[T/A]CTGAGCGAAGCCAAAGCACGACTGCAGATCCAGAAGAGCGGCCGGATTCTGACCGACGTCACAGCAGGTTATAGGATGCAAAACATAAATGTACACAACTATAGAGTTGAAGTCAGAATTATCAGCCCTCCTGAATTATTAGCCCCCCTGTATGTTTTTCCCACAAATTTTGGTTTAACGGAAAGAAGATATTTTCAGCACTTTTGTAAACATAATAGTTTTAATAATTCATCTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTAAATAATAAGTGAGAAGTATTTTTCAAGACACTTCTATACAGCTTGAAATGACATTTAAAGGCTGAACTAGCTTAATTAGGTTAACTAGGCAGGTTAGGGTAATTAGGCAAGTCATTGTATAATGATGGTTTGCTCTGTAGACTTATTAGGGGCTAATAATGTCATCCTTAATATGGTGTTTAAAAAATGAATAACTGCTTTTATTCTATCCGAAATAAAACAAATA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa2546
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000097695 Essential Splice Site 488 1300 9 24
ENSDART00000136363 Essential Splice Site 459 1271 8 23

The following transcripts of ENSDARG00000067824 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 10 (position 2318880)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 2264759
GRCz11 10 2292473
KASP Assay ID:
554-2495.1 (used for ordering genotyping assays)
KASP Sequence:
GTGGCCACTTCTGTCTTCGCGGCTCCTGACAGCGTGCTATTCTTAGGCGG[T/G]AAGAAGCACCTTTAGCGTCCGTCGGCTTCTGCTAACACACAGGAGCCATT
Long Flanking Sequence:
TTGTTCCAAAAGAGCCGACCCCAAAACCATACGGGACTAAGGCCAAAGAAGAAGCAGAAGAAGAAGAAGAGTATGAATGGTCTAGGAGGAGATGCACATATAAATTAGCTTAAGAAGAAGAGGAAGACAGAAGAATATTAAATTTATATAGTATAACACCATTGTTGTTTTGATTGTCAAGTACTCAGTCATGCCTATAGACTGATAAACGTCTGCATGACACAATCACATTTATATAGTTTACATGGATGAACTCTGTTCTTATCTTTGCGGTTCATGTAAAAGCAATCCCCCAATGCAGCAGGGTGTGTGTTATTTCTGCCAGATCCACAGAGTGTGTTCTTTCTCTCCACAGGTGTTAATTTAAATGATGGTCAGTGGCACCGGCTGGAGCTGGCCATCCGTCGGGGGCGTCTCGCAGTCACCGTGGACCAAACAGACAGCTCTGCAGTGGCCACTTCTGTCTTCGCGGCTCCTGACAGCGTGCTATTCTTAGGCGG[T/G]AAGAAGCACCTTTAGCGTCCGTCGGCTTCTGCTAACACACAGGAGCCATTTCCCAGAGTCATTTCCCTCTACACAAGCCCCATCCTTCAGCTTAATCAATCCGCCTTGTCAGTCAACAAAACCCCCTTCCGCTGAGAAAAGCACATTGGTTTACCTTTCCAGCAGTTTGTGTCCGAGTGCAGAATGACGCTTTAATTGCCTTCAGCTCACCAGAAGAGAGAATGAAGCGTGTCTCTGCATGAACAACACACTCTTTCCTCTAAGCTGATTTTGGCTGAAAGTAAAGCATGCATCACAGCACATGCGTAATATAATATAACAGCACATACATGAACATATTATAAACAGCACATACAGTTGAAGTCAGAATTATTAGGCAAGGTAGGGTAATTAGGCAAGTCAGTGTATAACAGTGGTTTGTTCTGTAGACAATCGAAAACCAATAATAGCTTAAGTGGGCTAATAATTTTGACAACAGTTTTTAAGAATAAATAAAAACT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa41568
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000097695 Nonsense 558 1300 11 24
ENSDART00000136363 Nonsense 529 1271 10 23

The following transcripts of ENSDARG00000067824 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 10 (position 2348358)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 2294237
GRCz11 10 2321951
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACCAGATGCTCCCCGAACCATTGTGAACACGGAGGGAAATGCTCGCAGT[C/A]ATGGAGCACGTTTCACTGCAACTGCTCTGCCACAGGCTACAGCGGAGCGA
Long Flanking Sequence:
ACTGTAAGACGTAATAAGACTCACTCTGGCACAGATGTCCAGTCTGCACGCTGGAATACAGGCTATTATGTCATGACCGTGACGCAGCTTCAAAAATTCGTTTCAAACCAGAAGTTCAAATTTGCTTGAAATAACGCAAAAACAACCAATTTACACTTTTTAGTGAACAATGTGTCCTAATAGTGTTTTTAGCAGTGTGGGACACATATACGACTGTCAACAGCTCAAAAAATGTGTTTTGGTGTTTCGTGACCCTTTAACGTCTTCTCGGACATCATCATCAATATATATATTTCTGTGCAAATGGCATGCTGTTAAACAAAAAAAGTCACTATAATCCAGCAGCAAGGTTTCCACTTCACTGTGTAATATTGAATGAATGCATATCTCTGTATCTGACTGTCCTTAAGATCAAGCTTTAAATCAGATATTTCCTGTCCTGTTTTTGCTCACCAGATGCTCCCCGAACCATTGTGAACACGGAGGGAAATGCTCGCAGT[C/A]ATGGAGCACGTTTCACTGCAACTGCTCTGCCACAGGCTACAGCGGAGCGACCTGCCACAGCTGTAAGAAATACAGACACACTACAAACGCCACCGCCGCATTTATTCAGCGCTCGAAGTCAAGGACAGATCGGGAGTCAAATGCAGAGAGAATAGCTTAATCAATCTGCAGCTTACACTCTGAACTATCTGCAGGCAGACACTTTTCACTCAGAAATGACTGTAGAGCGTTTTATTAGACATTACAAATGTTAACATACAAATGTAACACGCTGAATTAAATATGAATTTGAGGTGGGATTTTTTGTATTTCAGTAACACTAAGAGCTTTATTTGAATGATCCTAGAGCAAAGTCTAAAGCGTAAAAGCTTTAAGAGTGTCCAAAGACACTTTTGCCATATTAAGGATGGGAGTGCACCCCAGAGCATGGTATATAGTGTTGTCCTTATTATCTTAATGAGTTCTGGGTGTGTTTTGAGCATAACATGCATCAGAGTTTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16329
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000097695 Nonsense 794 1300 16 24
ENSDART00000136363 Nonsense 765 1271 15 23

The following transcripts of ENSDARG00000067824 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 10 (position 2367376)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 2313255
GRCz11 10 2340969
KASP Assay ID:
2260-2730.1 (used for ordering genotyping assays)
KASP Sequence:
CCTCTAGGTAACTTCTGGAACACTGCCTACTTCAACAAGGAGACRTCATA[C/A]CTGCACTTTCCCACCTKCCATGGGGAGCTGAGCGCAGACATCTCCTTCCT
Long Flanking Sequence:
TATATATCCATACATTCATTTAATTATTCAATGATACATTCAATTATTTATTGATAATTTTTTTATTTGTTTAATTACTCATTCATTCGTTTATTCTTTCACTCACTGGTTTGTTCATTATTTAATTCATTTATTTATTAATTTGCACATTTATTAAATTATTCATTTATTCATTCATTTATTTAAACAATTATTCATTTTCATTTTGACTTAGTTCCTTTTTTAATCTGGGGTTGCCACAGCGAAATAAAGCGGACTTTCTCCAGAAAAAAAACATATTATAGAAAATACTGGGACAAATTGCTTGCTGTGTTAAACATCATTTGGGAAATATTTGAAGAAGATAAATAATAACAGGAAGGCAAATCATTTTGACTTCAGCTGTATGTTTGTAGCGACAGAGTTTTTTGCGATCATGTGAACTGTATAAATGTGCTACAGTAAACATCTCCTCTAGGTAACTTCTGGAACACTGCCTACTTCAACAAGGAGACGTCATA[C/A]CTGCACTTTCCCACCTTCCATGGGGAGCTGAGCGCAGACATCTCCTTCCTGTTCAAAACCAGCTCTTCATCAGGAGTGTTCCTGGAGAATCTGGGCTTCAAAGACTTCATCCGCATCGAGCTGAGCTGTGAGTGTTTTTATCTTCTGCTTTACTCTTTAGTGGGGAATCTCGCCCAAAGAAATGGCATCCTCATATAAAAAGGGTTTTTATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTATTATTTTTTTTTTTTTATTGAGACAAATTTTTACTTACTTTATTGTCCACAAGTGGAAATTTATATTTGGCACCAGACATCCACATCAGCGTTCACATTACACATACAGTGCATCTGGAAAGTATTGATAGCGCTTCACATTTTCCACTTTTGTTTATGTTACAGCCTTATTCCAAAATGGATTAATTACATAGATTTTCTCAATATTCTACACACAATCCCCCATAATGGCAATG
Associated Phenotype:
Not determined