ZMP
col4a1
Ensembl ID:
ZFIN ID:
Description:
Novel type IV collagen alpha chain protein [Source:UniProtKB/TrEMBL;Acc:B8JK27]
Human Orthologue:
COL4A1
Human Description:
collagen, type IV, alpha 1 [Source:HGNC Symbol;Acc:2202]
Mouse Orthologue:
Col4a1
Mouse Description:
collagen, type IV, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88454]
Alleles
There are 12 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa21437 | Essential Splice Site | Available for shipment | Available now |
| sa27345 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa41357 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa16923 | Nonsense | Available for shipment | Available now |
| sa34560 | Nonsense | Available for shipment | Available now |
| sa45346 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa34559 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa21437
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000077296 | None | None | 1601 | None | 50 |
| ENSDART00000130442 | Essential Splice Site | 26 | 1644 | 2 | 52 |
Genomic Location (Zv9):
Chromosome 9 (position 8714870)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 9 | 8694713 |
| GRCz11 | 9 | 8673043 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTGCCTCCTAGTGTTTCAAAGCTGACATAATTTTTCATCTTTTTCTTTC[A/T]GGGTGGATGCTCGGGGTCTTCATGTGGTGGTTGTGACTGCAGCGGTGTTA
Long Flanking Sequence:
ATTGTGAGCATTCAGTAGCATTTTGTGTTATTATTAACACATTGTTCATCTCAAATAAATATAAAGTGCAGTTTTACTTGAGCCAACACAAAAAGTAACTTTTATATTGTAGTGAAATATTAAATCTCTGTCTTTAAAGCCTTTAGCTTATGTGTCTGTTTCAGACCCTGCACATATTAAATACATTTCTCGTAGCTGTCCTGGAGTAAAATATTGTTAAAAAAATGACTAATGTGGATCAATACTGTTCAACATGAAATCATGCCACTTTCTTCTATTAGCATTTTCTAAAAGCTTACATGTCCAAAATGATGTTGATTTATTCACGCTATCAACATTTTTCTGTTTAATTCTAAGCCATCAGTAGATTTTACCAGAATGTTCTCTTCATTGCCACCCTTGAGTCTCTGTACTCCATTAACCCATTTTGAATGCCTTTATCATGTATTTGCTGCCTCCTAGTGTTTCAAAGCTGACATAATTTTTCATCTTTTTCTTTC[A/T]GGGTGGATGCTCGGGGTCTTCATGTGGTGGTTGTGACTGCAGCGGTGTTAAAGGGGCAAAGGTGGGCATGTTTTCTTCTACTTCCTGCCATATTACCTATGTTGCATCATTTAAGATCAACAATAGTAAATATCTTTATTTGTTGTGATGGAAAATCAAGGATATTCCACCAAATATTATTATCTAAACCACTAATTATTATTGTTACCACACATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCCTTCGTTCATTCGTTCATTTGTTCAATTAATCATAAATGAATGAATGAATGAATGAATGAATGAATAAATGAATGAAAGCATTATTTTATTTTAAATGTGGAAGAAATTGGATTTCTCCTTTATAGATAAAACGATTATTATCACTTTACTCAAACTCAATCCTACACAGTAGTATACACAGTAAAGAAAAATGATTAGCAAGTGATCTCCTTTCCCCACATAGCAATAAACATT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa27345
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000077296 | Nonsense | 570 | 1601 | 25 | 50 |
| ENSDART00000130442 | Nonsense | 608 | 1644 | 27 | 52 |
Genomic Location (Zv9):
Chromosome 9 (position 8700999)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 9 | 8680842 |
| GRCz11 | 9 | 8659172 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTACTGTTCTTTAGTAAAGCCCTAATCCCTAATTTTTATTTGTAGGAGCT[A/T]AAGGTGAAGCTGGTAAAGTCATAAGTTTACCTGGGCCTCAGGGTGCCCCA
Long Flanking Sequence:
CTGAAGGGAGATAAGGGCTTACCTGGTACTACTGGAGACAGAGGATTCCCGGGTGTTGATGGGCTCCCAGGAAAAGATGGACGACCAGGATATCCTGGAACCAAGGGAGAGCCTGTATGTGCTAACTCTTAGACATATGCCAATTATACTTCTCTTTTGTGTCTTTTTTTCTAGTGCACCAAGTTCTGTTGTCTCTTCTACAATATTTTATTATTCGTAGAAATGTCTGATTTATTGATTATATTTTCTATGGTTAGGCTAAATTCGGAATTAAGGGTGATCGTGGCCCAGATGGAGATTTTGGAGTTCCTGGCCCTCCAGGCGAAAGAGGTCCCCCAGGTGAACCAGGTATAGGTCGGCCAGGTCAACCTGGAGATAAGGGCTCTGCAGGATTCCCTGGTGCACCAGGAAGGCCAGGACTACAAGGTCAGTGATTTAAAGTCTAGAGGTTTACTGTTCTTTAGTAAAGCCCTAATCCCTAATTTTTATTTGTAGGAGCT[A/T]AAGGTGAAGCTGGTAAAGTCATAAGTTTACCTGGGCCTCAGGGTGCCCCAGGGCCTCGTGGAGAGAGTGGTAGACCTGGTCTTCAAGGTACATTTAATGGATATGATTGTGTCATCATTCTCAGTAACTGCAATCATTTCTACAAGGCAGAGTTGGTTGTGTTGATTTCTCTTTTGTTGCCCAGGTGATAGAGGATTTCCAGGTGAACGTGGGGTTCCAGGATTCCCTGGAGATAAAGGTGACCCTGGACTGCCAGGAATTGGACTTCCAGGACCCCCGGGGCCAAAAGGTAAACTGCAAATGCCAAACTATAACAGTCTGTTTATGATTAAAGAGGAAATGCAACTGTATCTTTTAAACTGATATCACTGCTGATAACAGATTGATATCAGTGATGTCACTTAGGTGGGACATTCTGAATAATCTGCACTTGACACTATTTTTTTTAACCGTAACCTGAGATCATTCTAAATACTAGCAATAAAACCTTGGTTTGTTTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa41357
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000077296 | Essential Splice Site | 633 | 1601 | 26 | 50 |
| ENSDART00000130442 | Essential Splice Site | 671 | 1644 | 28 | 52 |
Genomic Location (Zv9):
Chromosome 9 (position 8700709)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 9 | 8680552 |
| GRCz11 | 9 | 8658882 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGACCCTGGACTGCCAGGAATTGGACTTCCAGGACCCCCGGGGCCAAAAG[G/A]TAAACTGCAAATGCCAAACTATAACAGTCTGTTTATGATTAAAGAGGAAA
Long Flanking Sequence:
GATGGAGATTTTGGAGTTCCTGGCCCTCCAGGCGAAAGAGGTCCCCCAGGTGAACCAGGTATAGGTCGGCCAGGTCAACCTGGAGATAAGGGCTCTGCAGGATTCCCTGGTGCACCAGGAAGGCCAGGACTACAAGGTCAGTGATTTAAAGTCTAGAGGTTTACTGTTCTTTAGTAAAGCCCTAATCCCTAATTTTTATTTGTAGGAGCTAAAGGTGAAGCTGGTAAAGTCATAAGTTTACCTGGGCCTCAGGGTGCCCCAGGGCCTCGTGGAGAGAGTGGTAGACCTGGTCTTCAAGGTACATTTAATGGATATGATTGTGTCATCATTCTCAGTAACTGCAATCATTTCTACAAGGCAGAGTTGGTTGTGTTGATTTCTCTTTTGTTGCCCAGGTGATAGAGGATTTCCAGGTGAACGTGGGGTTCCAGGATTCCCTGGAGATAAAGGTGACCCTGGACTGCCAGGAATTGGACTTCCAGGACCCCCGGGGCCAAAAG[G/A]TAAACTGCAAATGCCAAACTATAACAGTCTGTTTATGATTAAAGAGGAAATGCAACTGTATCTTTTAAACTGATATCACTGCTGATAACAGATTGATATCAGTGATGTCACTTAGGTGGGACATTCTGAATAATCTGCACTTGACACTATTTTTTTTAACCGTAACCTGAGATCATTCTAAATACTAGCAATAAAACCTTGGTTTGTTTGGTTAGTAAATAATGCACCAGTTCAGCAAGTAGTAGGAATTATGAATGCTTCTGACAGCGGGTTCCATTTATGATGTAGAAATCATGGTGAGGCTGATTGTAGCTCTCCATGTCAGTCAATGCTGCATTTTTTTGGACACTGCAACTAAGCCCCTAGTTGAGAATGAACATATACAATGGAACACAGTTCAGACAACCAGACACCCCAGATTAGTTTATGGCATATTAATGACTTACTGAGGTGCCTCACTGAGGCCCCGTTTACACTAGTGCGTTTTAGTTTTAAAACGG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa16923
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000077296 | Nonsense | 765 | 1601 | 30 | 50 |
| ENSDART00000130442 | Nonsense | 803 | 1644 | 32 | 52 |
Genomic Location (Zv9):
Chromosome 9 (position 8697648)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 9 | 8677491 |
| GRCz11 | 9 | 8655821 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGTCTTGGTAATGTCCCAGGCCAGTCTGGAATAAAGGGTGACAAGGGTTA[T/A]CAAGGACTACCTGGTTTGGACATGCCTGGCCCTCCAGGAGACAGAGGTAG
Long Flanking Sequence:
TCACCCTGTCTATAAGAGTGTGCCCTGCCACCCTGCAAAGGAAACTCATTTCAGCCGCTTGTTTCCGAGATTTTGTTCTTTCGGTCATGACCCAAAGCTCATGACCATAGGGGAGAATAGGAACAAAGATTAGCAGTTAGGTACAGAAAGGTAGTTATATTATAATATATTATTATAGGACTGTGTATGATTGATGGCTTACACAAATGTAGGGGGTAATTAGAAGTGTTATAATAGCTCCTGATTAATTTTGTTACTTTTGCAGGTAACCCTGGACCACCTGGAGTCCATGGTGCACTAGGGCCACCAGGTCCTCCAGGACTGGGAGAACCTGGAGCTCCTGGACCAATGGGGCCACCTGGAGGCCCTGGACCTATTGGTGAGATGTTTCTATTGCCTAGCACCCACACTTACATGCCCAGATGTTCACATTTGACATAGTTTGTGACAAGTCTTGGTAATGTCCCAGGCCAGTCTGGAATAAAGGGTGACAAGGGTTA[T/A]CAAGGACTACCTGGTTTGGACATGCCTGGCCCTCCAGGAGACAGAGGTAGCCCTGGTGTCCCAGGTCTACCAGGATCAAAGGGTTTGCCTGGGCAACCAGGAGTTCCTGGAAAAGATGGCTTTCCTGGCGAACGTGGTGAGTGTTTACTCCTTGCCATCTAATAAAGCCTATTAGATGCTGATTTTTTGTTGCTCAAAAGAATTCATATTTGAATTTGTTTTTCAGGTCCAAAAGGAGAAATTGGAATCATGGGAATGGCAGGACCACCAGGATTTCAAGGTTTAGTTGGAAATCCTGGAGATCCTGGGCAAAAGGGTATGTGAACACACAATAGAAACAATTTCTATCATTCATTCATTCATTTTTTTTTTCGGCTAAGTCTCTTTATTAATATGGGATCACCACAGCGGAATGAACCACCAACTTATCCAGCATATGTTTTAAGCAGCGGAGGATCTTCCAGCCACAACCCAACACCCATACACTCTTGCATTCACAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa34560
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000077296 | Nonsense | 923 | 1601 | 33 | 50 |
| ENSDART00000130442 | Nonsense | 961 | 1644 | 35 | 52 |
Genomic Location (Zv9):
Chromosome 9 (position 8693177)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 9 | 8673020 |
| GRCz11 | 9 | 8651350 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTGGTGACCCTGGTATGCCAGGAAAAGATGGAATGCCAGGGTCACCTGGA[C/T]AGCCAGGTTTGTCCCTAAAGCAATCATATGAAGTAAAAAAATAGTTGGAT
Long Flanking Sequence:
GTGAAATGGTCATTTTTTTCCACTTAGACTTACTTTGCATCCTGTAAATAGCGAATGCGCTTATGGCGCAACGCAGCTGGCTCTTAAAGGGAATGGGAGATGAGACTCTAATTGGTTTATTCTCAAAACACACCTATAACTCATAAAGAAAATAAACTCAACCCTTTAAGACCATGCGCCATGGCGCAAAGCAGATTTTCCCGTCCTTAAATTAACAAAAATGCGTTCTGACATGCCCTGAAAGCGTTTGCGCCCTGCGTTTTGCACTCTGCGCATGGACCGTCAAAATAGAGCCCTTGAAGTTGAAAGCCTTAATCATATATAAACCTGAGCACATTCAATTTCAGAGGCTTGTTGGGGCTCTAAAATTAAACTCATTAGACTTTGTGTTTTAACCTTGTTTTGCAGGTGATCCTGGTCCTACTGGAGAAAAGGGGTTTCCTGGAACATCTGGTGACCCTGGTATGCCAGGAAAAGATGGAATGCCAGGGTCACCTGGA[C/T]AGCCAGGTTTGTCCCTAAAGCAATCATATGAAGTAAAAAAATAGTTGGATATTAATTATCTTTATTTGATAATGTTAGTATTATGGGATCATACAGTTAAAGTCTGAATTATTAGCCTCCCCTTTATTTTTTATTTTTGTAATATTTCTCAAATGATTAACAGAGCAAGAAAATTTCACAGCATTTCTGATCATACTTTTTTCTTCTGGAGAAAGTCTTATTTGTTTTATTTCTGCTAAAATAAAAGCAGTTTAAAAATTTTTAAAAACCATTTTAAGGTCAAAATTATTAGCCCCTTTAAGCTATATTTATTTCGATAGTCTATAGAACAAACCATTGTTATACAATAATTTGCCTAATTACCCTAACCTGCCTGGTTAACTGAAAAAAAAAAAAAAAACTAGTTAAGCCTTTAAATATCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGTAAAATTTATTTACTGGCATCACGCAAAGGTAAAATAAATC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa45346
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000077296 | Nonsense | 1152 | 1601 | 40 | 50 |
| ENSDART00000130442 | Nonsense | 1194 | 1644 | 42 | 52 |
Genomic Location (Zv9):
Chromosome 9 (position 8689211)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 9 | 8669054 |
| GRCz11 | 9 | 8647384 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTGGAACCAAAGGTGATAAAGGTCTGTCAGGATTGCCAGGGGATCAAGGT[C/T]GACCTGGGGAGAGAGGACTTCCAGGACAAGCCATGGAGGGGCCTAAAGGG
Long Flanking Sequence:
GAACCCACTAGGCTACTTTGTCACTCATCTATAAAGGAGGGGAGTAGAGGCAGGCAGGGTTTTTGTTCAAGACAAAGATACTGAGATAAGAAACTAATAATTTATAGTGAGTTTGGAATCATCTGATAAAGCTAATGAGGGACCAGCCGTGAACAATCATAAGCACGTGATCCTCTTGAAATTAATTTATAAATAAACTTCACAAATGCTCATAAGGACGTTGTCTATGTGCAAAGTATGCGCTGTAGGGTATGTCGATCACTCAACACAGATTTATAAATCATGCTTAAGAATGACTTAAGAATGACTAAATTTTAGTTAATTATTTTTAATTAACACCGTATTATCACAAGTAATTAAATCGGATCGTTAGTAATTAATAAAATGTCTCCACACCAGGTGACAAAGGCAACCCTGGTCTTCCTGGCATTCCCGGGAGTCCAGGTATACCTGGAACCAAAGGTGATAAAGGTCTGTCAGGATTGCCAGGGGATCAAGGT[C/T]GACCTGGGGAGAGAGGACTTCCAGGACAAGCCATGGAGGGGCCTAAAGGGGACAGAGGAGACCAGGGACAGCCAGGAGAAAGAGGTGAAGCCTAAACACTTTCACATTTACATGTTTGATGCACACTTCATGTTATTTGCAAAAGCTTGCTTTTTCTGGAAAATCTGAAAATTGTTTTATGAGATTAATTGAGCAAATGCTACCCATTACAGCATAACAAGGGAATCTACAGGGACTCTACAGTAATGCAACAGTCACCAAAAGGCCACAATTTAGATCAAAGCCTAAAAAGGGCAGTTTCAAAAGAGTTATTATCAATATTTGTGGCGTATTTTGAGCTAAATTCACATACACACTCTAGGGCAGGGGTGTCCAAACTTTTTAGCACGAGGGCCAGATGCAAAAAAAAAAAAAAAAAGTTGTCCCGGGCCAAATTTGTGTGTGTGTATTATGGAATTCTTTATTTTTATTATTTTTTTAAGATTTATTTTTGGCCTTTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa34559
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000077296 | Nonsense | 1502 | 1601 | 48 | 50 |
| ENSDART00000130442 | Nonsense | 1545 | 1644 | 50 | 52 |
Genomic Location (Zv9):
Chromosome 9 (position 8680850)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 9 | 8660693 |
| GRCz11 | 9 | 8639023 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCTGCTATGGTTATAGCTGTGCACAGTCAGACCATACAAATTCCAAACTG[T/A]CCCGATGGCTGGGCTTCACTCTGGATTGGATACTCTTTCGTTATGGTGAG
Long Flanking Sequence:
CACTCCTGTTCTTTGTACCCTGTAGGTACAGCTGGTAGTTGCCTAAGGAAGTTCAGCCCAATGCCGTTCCTCTTCTGTAACATCAACAATGTTTGCAACTTTGCATCTCGTAATGACTATTCCTACTGGCTGACCACTCCAGAGCCCATGCCTATGAGCATGGCCCCCGTCACCGGCGAGAGCATCAAACCCTTCATCAGCAGGTCTGTGATATTTATTAATTAAAATTTCTATTGTATTCTATTGACTTTTATTGTGTTTTTATTTAAACTGATTGTTCTAGCTGTCCTGTACGGTAACCTTGAGTGCCAAGAAAGGTGCCTTTAAATAAAATGCATTATTATTGTTATTATGAAAGTTTGATATATCCACGAGTGAGTGTTCTTAGTTCCCATGTACAGTATACAGTATGTGTCTTTTTTCTGTGGCAGATGTGCTGTGTGTGAGGCTCCTGCTATGGTTATAGCTGTGCACAGTCAGACCATACAAATTCCAAACTG[T/A]CCCGATGGCTGGGCTTCACTCTGGATTGGATACTCTTTCGTTATGGTGAGAAAACCAGATAAATTAAAACAAAATCGACTAATTAAATAATGTGAATGCACAAACTGTAAATGTAAATAAATACACTGCTCTTTCCAATTATAGTTTTTTTAAGAGCTCAGAACATATTGGTTTATTTCATGTGAATAAAGCAGCTGAAATATTGCATCTTGAGCTGCACAAGTGTAAGTAAACACAGTGCTGTGCTTCACTACAAATATATTTATTTAATTTACAAAAAAATAAAACATTGAAATAGTAAAAAACTAAATATAGAGCAATAGAGTATAGCACAGTAAAAAAATAAAGATTTGTAGATGTTAGTACTGCAAATTTACAGTTGAATTACACAATAAAATAGTTTATTATTTTTTATTAACTACTTTTTATTACATAGTAAAATAGTAGGTCACACTTTATTTTGATGGTTGTTTGTTGAATTTAAGTTACATTGCATCTAC
Associated Phenotype:
Not determined