Busch Lab

ZMP

rbm39b

Ensembl ID:
ENSDARG00000041853
ZFIN ID:
ZDB-GENE-050327-97
Description:
RNA binding motif protein 39b [Source:RefSeq peptide;Acc:NP_001014392]
Human Orthologue:
RBM39
Human Description:
RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923]
Mouse Orthologue:
Rbm39
Mouse Description:
RNA binding motif protein 39 Gene [Source:MGI Symbol;Acc:MGI:2157953]

Alleles

There are 7 alleles of this gene:

Allele Name Consequence Status Availability
sa14375 Essential Splice Site Available for shipment Available now
sa15085 Nonsense Available for shipment Available now
sa16431 Nonsense Available for shipment Available now
sa17954 Essential Splice Site, Splice Site Available for shipment Available now
sa25402 Nonsense Mutation detected in F1 DNA Not yet available
sa38704 Nonsense Mutation detected in F1 DNA Not yet available
sa41262 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa14375
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061328 Essential Splice Site 17 539 3 17
ENSDART00000075748 Essential Splice Site 17 164 2 7
ENSDART00000098634 Essential Splice Site 17 205 2 7
ENSDART00000140233 Essential Splice Site 17 243 2 8

The following transcripts of ENSDARG00000041853 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 38361353)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 37216768
GRCz11 8 37249202
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGCAGACGACTTCGACGTTGAGGCCATGCTAGAAGCTCCTTATAGRAAG[G/A]TGGGTSGGCGACMGGAAGTTACCTGATCTCTTCTCTGTTTTTNNCCCCTT
Long Flanking Sequence:
TTTGATCGTTGTGTGTGTTGCTGGTCTATAAGCGAATCTGACCATTTGTTTTTGCAGTTCTTGGCTTCACGCGCGTCGCAGAGGTCGCGACGACAAACGGAGTAAATAAAAACAGGTAATTTTTCCAAATATGTTGTATGTCTAATTATGAATTTGGATCAGTCATCAGTGAAAATGGTGCACAAACCACAGATTTCTGTCAGTGAGAACATGAGTGTGGAGTCTAAATTAGCCGCTTATGTAATGCTGTTGTTGTCTCGATAGCGTCTGCTGCAGAATCGAGCGTGTTATTTATAAACCAGTAAGACCACAACTCGGCTGTAAGATGCATTTATGTTTATTTGTTTGGTCGATGTAGCTCTAACACAAATAGTTTAACAAAACCATAACGTATAAATCGTCGTGTTGTATTTTGTAAACCCCGTGTTTTGTTCATACAACAGGTCAGGATGGCAGACGACTTCGACGTTGAGGCCATGCTAGAAGCTCCTTATAGGAAG[G/A]TGGGTCGGCGACCGGAAGTTACCTGATCTCTTCTCTGTTTTTTTCCCCTTTCTTTTTCTTCCTTTTTTGTTCGATGGGTGTTAATGGATTAGTTGACCCAAAAATTAAAAATTACAAGTTTACTCACTGTTCCAACCTGTATGGTTGTCGGTTTTTTATGAGGAACTCAAAGATTCAAACAAAAATATCACATTCAGTGATTAAGAACTCTTTCAATCTTTTATTAAATTGAACATTTTGATTTACTATGCCAGTTTCATGCCACACAAGAGTACAACAGTCTGTTTCCGGTAATATCACAAATTTAATCTATTTACATTGATTTATCCCTTTAACAGCCCCACCAAGAGAAAAAATGTTTGGATCGCATATCTTATCTCCTAATGTCGCTAGTTAACACACTCAATGCATCAAACACGTTTCATAATTTATAAAATATTAAAAGCCGCTTTTCCACTATCGTGCTGAATCGTTCTTTATGCAGAAGCGTTCCATTCCGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15085
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061328 Nonsense 82 539 5 17
ENSDART00000075748 Nonsense 82 164 4 7
ENSDART00000098634 Nonsense 82 205 4 7
ENSDART00000140233 Nonsense 82 243 4 8

The following transcripts of ENSDARG00000041853 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 38354158)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 37209573
GRCz11 8 37242007
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTCGCAGCCGTGAGCGGAAGCCTTCACGGAGCAAAGAGCGAAAACGTWCA[C/T]GATCCCGCAGTAAGGATCGCGGTGGACGTAGCCGTGGACGCAAAAGCCCT
Long Flanking Sequence:
AAAGGTTTATTTTGTGTTCAATAGTATAAAGACTTTAAATGGTTTGGAACCACTTGAGGGTGAGAAAATATTCATTTTTAGGTCAATCATCTCTTTAAATATTGTCATTGTCAATGCATTGGAAGTTTCTGTCTCCCAGAAAAAGTCCTTGTGTCAGTGTGTAAACATAATTGGCAGGAAATCTGATTCTGATTCATGTTGTTCTCTTTTTCAATGCTGTTCAGGGTGAAAGCAAGTCATCTAGCGCCAATGGTCACAATGAGGAACGCAGCAAGAAGTAAGCAAATACCTGTTTTTACGTGTGTTTATTTCTTTTTATGCTTAAAAAAGCTAAATTGGTGTTGTTTTTCTTTACTTAAAGGAAAAGACGCAGCCATAGTCGAAGTCCAAGCCCAGGCCGAAGGAGGAGTAGAAGCGGGGGTCGCAAAAAGAGCAGAGAGCGCCGCAGGAGTCGCAGCCGTGAGCGGAAGCCTTCACGGAGCAAAGAGCGAAAACGTTCA[C/T]GATCCCGCAGTAAGGATCGCGGTGGACGTAGCCGTGGACGCAAAAGCCCTTTGTGAGTTAAACCCTCACTTTAATTAAGTGTAGAGGCTACATTCTGATGTATTTTGTGCTGCTTTGTCTTTCATTGGATTGTTTAGGGGGTTCACAGTGGACGTAAAATATATAGGTTTTTTTTACACAAAAATTACAGTTGGGTACATACCTTGTTTTTAAAGGCCTAGTTCAGTAAAGCTGGGGGTAATAAAAAAAAATGCTTCTTTTTTTCTCTCCATTAATAAACAATGGCTTAATTAACAAATTGCACAGGCTTTTAAATAAATATTATTTAAATCCTAATTTTCTTAAGGATATTTAGTGAATGCTTTAACTATTGCTAGTACATTATTATTAAATTGTTATAATTTTTATTTTATTATTGATATTGTTAGTTTTAATTTATCATTTAGTTGTACTCTATTTAAATAAATTATAGGTAGGTAACACTGTGGTCATGGTTCGTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16431
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061328 Nonsense 104 539 6 17
ENSDART00000075748 Nonsense 104 164 5 7
ENSDART00000098634 Nonsense 104 205 5 7
ENSDART00000140233 Nonsense 104 243 5 8

The following transcripts of ENSDARG00000041853 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 38353493)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 37208908
GRCz11 8 37241342
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATAGCGACAAACKGTCATTTTGTCTTTTTGTCACAGTATGGGGCAGAAAT[T/G]AAATGGTGGTCCTGGAGGGAAGACCGGCCCACAACATTTTCCCAAACACA
Long Flanking Sequence:
AGGTTTTTTTTACACAAAAATTACAGTTGGGTACATACCTTGTTTTTAAAGGCCTAGTTCAGTAAAGCTGGGGGTAATAAAAAAAAATGCTTCTTTTTTTCTCTCCATTAATAAACAATGGCTTAATTAACAAATTGCACAGGCTTTTAAATAAATATTATTTAAATCCTAATTTTCTTAAGGATATTTAGTGAATGCTTTAACTATTGCTAGTACATTATTATTAAATTGTTATAATTTTTATTTTATTATTGATATTGTTAGTTTTAATTTATCATTTAGTTGTACTCTATTTAAATAAATTATAGGTAGGTAACACTGTGGTCATGGTTCGTCCCCTCATGTTTTATATAACATACTAAATGTAAAATATGAGTTAAGGCATTTTTTTGGATCAGTTCACTTCTAATGAAGTTTTCTGTCTGCATTTGGCTATTTTAAAATGATTTTATAGCGACAAACTGTCATTTTGTCTTTTTGTCACAGTATGGGGCAGAAAT[T/G]AAATGGTGGTCCTGGAGGGAAGACCGGCCCACAACATTTTCCCAAACACAGGTGATCTCATCTGTGACTCTTGCTACCTGTTGAGTGTGTGTGTGCTTGTTGTATGTGTATTTGCTGTATGTATATTTGTTTAGAGTAATTTGAACCTGAATCAGTGATCAACAAAAACTAACCGAGCTTTCTCAATCTAGTCGAAAACGGTCTCGGAGCAAAAGCCCATTTAAGAAGGAGAAAAGCCCATTCAAGAAGGACAAAAGCCCATTTAAGAAGGACAAAAGCCCTGTCAGGTGAGATGCACATCACTGTCTGCTGAAGTACTGTAGAATTAAAGTATTTACACAAATTACTCCATAGCCAAGTTGGACAATCTGAACTTCAGCGGACATTCACGCCGCGTTAACCAATCAGGATCTTTGTATTCTTTGTGATGTTAATTTCAATGCAAAAGAAAGTCAAAGGTCATTCAGAGAAAAATTCTTGAATATATATGTGCTTTATTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa17954
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Essential Splice Site, Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061328 Essential Splice Site 153 539 7 17
ENSDART00000075748 Splice Site None 164 None 7
ENSDART00000098634 Essential Splice Site 153 205 6 7
ENSDART00000140233 Essential Splice Site 153 243 6 8

The following transcripts of ENSDARG00000041853 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 38353205)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 37208620
GRCz11 8 37241054
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CCATTCAAGAAGGACAAAAGCCCATTYAAGAAGGACAAAAGCCCTGTCAG[G/A]TGAGATGCACATCACTGTCTGCTGAAGTACTGTAGWATTAAAGTATTTAC
Long Flanking Sequence:
TCTATTTAAATAAATTATAGGTAGGTAACACTGTGGTCATGGTTCGTCCCCTCATGTTTTATATAACATACTAAATGTAAAATATGAGTTAAGGCATTTTTTTGGATCAGTTCACTTCTAATGAAGTTTTCTGTCTGCATTTGGCTATTTTAAAATGATTTTATAGCGACAAACTGTCATTTTGTCTTTTTGTCACAGTATGGGGCAGAAATTAAATGGTGGTCCTGGAGGGAAGACCGGCCCACAACATTTTCCCAAACACAGGTGATCTCATCTGTGACTCTTGCTACCTGTTGAGTGTGTGTGTGCTTGTTGTATGTGTATTTGCTGTATGTATATTTGTTTAGAGTAATTTGAACCTGAATCAGTGATCAACAAAAACTAACCGAGCTTTCTCAATCTAGTCGAAAACGGTCTCGGAGCAAAAGCCCATTTAAGAAGGAGAAAAGCCCATTCAAGAAGGACAAAAGCCCATTTAAGAAGGACAAAAGCCCTGTCAG[G/A]TGAGATGCACATCACTGTCTGCTGAAGTACTGTAGAATTAAAGTATTTACACAAATTACTCCATAGCCAAGTTGGACAATCTGAACTTCAGCGGACATTCACGCCGCGTTAACCAATCAGGATCTTTGTATTCTTTGTGATGTTAATTTCAATGCAAAAGAAAGTCAAAGGTCATTCAGAGAAAAATTCTTGAATATATATGTGCTTTATTAATGATTGCAGAATGGCTTATGTAGTGGGACGATTCACATAATCTCTATTTCCTGAGGGAACGACATGTGTTTTAGTGTTTATTTACATGTGTGTTTCTTCAAACAGGCAGCCGATAGATAATCTGAGCCCTGAGGAGAGAGATGCCCGTACGGTGTTCTGCATGCAGCTCGCTGCCAGAATTCGACCCAGAGATCTGGAAGACTTCTTCTCAGCAGTAGGAAAAGTATGAAGCCCCAGATTAAATCATGTTTGTTTGTGATCTCCATAATAGTTCCTTTTTACTGTTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa25402
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061328 Nonsense 230 539 9 17
ENSDART00000075748 None None 164 None 7
ENSDART00000098634 None None 205 None 7
ENSDART00000140233 Nonsense 230 243 8 8

The following transcripts of ENSDARG00000041853 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 38352561)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 37207976
GRCz11 8 37240410
KASP Assay ID:
554-7784.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTGAGTTTGTGGATTCAACATCAGTCCCACTAGCAATCGGCCTCACAGGA[C/T]AGAGGGTGCTTGGAGTGCCTATCATAGTCCAGGCCTCACAGGTCAGAGTA
Long Flanking Sequence:
TAATTTCAATGCAAAAGAAAGTCAAAGGTCATTCAGAGAAAAATTCTTGAATATATATGTGCTTTATTAATGATTGCAGAATGGCTTATGTAGTGGGACGATTCACATAATCTCTATTTCCTGAGGGAACGACATGTGTTTTAGTGTTTATTTACATGTGTGTTTCTTCAAACAGGCAGCCGATAGATAATCTGAGCCCTGAGGAGAGAGATGCCCGTACGGTGTTCTGCATGCAGCTCGCTGCCAGAATTCGACCCAGAGATCTGGAAGACTTCTTCTCAGCAGTAGGAAAAGTATGAAGCCCCAGATTAAATCATGTTTGTTTGTGATCTCCATAATAGTTCCTTTTTACTGTTGTTAAATGACAGACAAAACCTTCTGTTTTTAAGGTCCGTGACGTCAGGATGATATCAGATAGAAATTCTCGGAGGTCGAAAGGCATTGCCTACGTTGAGTTTGTGGATTCAACATCAGTCCCACTAGCAATCGGCCTCACAGGA[C/T]AGAGGGTGCTTGGAGTGCCTATCATAGTCCAGGCCTCACAGGTCAGAGTAATTTTAATTCTGCACAAATGTTCTTTCTGATGTTTAATATAATCTATGGGATTCATTTTGTTAAATTTTTCAATTCAGGCTGAGAAGAACAGAGCAGCAGCCATGGCCAGCATGCTCCAGAGAGGTGGCGCAGGGCCCATGCGGTTGTATGTGGGTTCGCTGCACTTTAACATAACCGAGGACATGCTCAGGGGTATTTTTGAGCCCTTTGGAAAGGTTTGTATGACATTTTAAAGCATCCTTATTTTGCTACTCATTTTAGCATTCATAAATAATCAGCTAAAGGAGGATAAAATAGGCAGGGAGTGAATTTGCTAAGCTATTTATTTTTCTGTTTTCAGATTGAGGGCATCCAGCTAATGATGGACAGTGAGACTGGCAGGTCAAAAGGATACGGCTTCATATCAGTGAGTTCATCAGAATGCAAATTTCTTCAGTTTAAATAGATCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa38704
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061328 Nonsense 473 539 15 17
ENSDART00000075748 None None 164 None 7
ENSDART00000098634 None None 205 None 7
ENSDART00000140233 None None 243 None 8

The following transcripts of ENSDARG00000041853 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 38347293)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 37202708
GRCz11 8 37235142
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GATGATGTCATTGAAGAATGCAGGAAACACGGAGGTGTAATTCACATATA[T/A]GTCGACAAAAACTCTGCTCAAGTAAGTGACAACTTTTATGACGTTATAAA
Long Flanking Sequence:
TATGCAGCTCATCGTAGTTTGCTTAGGCAGGGAATATAAGTGATAATAACATTCGAGTAATGCAGTTTATTTTGAATAGACAGGGATTAGAAAATGAATGTGGCTTTGTCGAAAAGCTTAGGTGGCAGACTTGTTACCTTGCTAATGTCGCTACCCTATCAAGCAGTGACACCCCATTCACACGGGCCGTCTGTGTTAATGCTTGACGGAGAGCATGTCTGAAGCTTCACACTGACACAATTATCATAGTGACGACAGCCAATTACATCAGCTTGCACCACGATAAAAAAATAAGAGTGAAAAGATGTATATAATGATTGATCATGAAGCACCGGGTGATTTTCTTTGACAAATGCTGTGTGGAATGATTTGTGGTTAAATAAATAATAATACATTCTCGATGTGCTGCTTTGTAGGGAAAATGAACCTGGCTGGGACATTGAGATAAGAGATGATGTCATTGAAGAATGCAGGAAACACGGAGGTGTAATTCACATATA[T/A]GTCGACAAAAACTCTGCTCAAGTAAGTGACAACTTTTATGACGTTATAAAAAATGTTGGGGACCATTTTGAGTGCTTTTTCCAGAAGCAAATTTCCTAATTGCAAGGGTCTGTAGATGATAAAGAACCAATCACAGTTGTATTTTTTTTTACTCTTTCCCCTTGAAACTGAGCGTGAAGGGGAGTGGCTTCAAATTTTACCCCTAAGAAACGAGACAACACCTGTACACGTCAACATGTCAACGCAAGACCTTGCTATATATGAGATTGACGATGGCCACTGCTGTAGTTAATCCAGTTGTGTTATTTGGTATTTATCTTTAGGAAATCACTGAAGGCATATATCATGTTATCATAACGATATAATGTGGCAATAAGCTCATCACTGTACTGTGCATTTACACTGTGACCATATTCATCTATGTAAACACAAGAAAACAACATTAACATTATAACAGACACTGTAAAAAGGTCATTCCCAGCCACTAGACTTTTCTGACA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa41262
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061328 Nonsense 484 539 16 17
ENSDART00000075748 None None 164 None 7
ENSDART00000098634 None None 205 None 7
ENSDART00000140233 None None 243 None 8

The following transcripts of ENSDARG00000041853 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 38344885)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 37200300
GRCz11 8 37232734
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CATAAATATGTCTAAAAAAAATTTTATTATTCTTTGCAGGGTAATGTTTA[T/A]GTAAAATGTCCAACTATCCCAGTAGCAATGGCTGTTGTCAGCTCTCTTCA
Long Flanking Sequence:
AAACCTTACCATTCGGTTGGGAGTGCAGAAGCCTATTCTCCACTTCTGAATGCCTCTGGTGGTATTTAAAATTTTCTGTCATGTTGCGTCCAGTTCGATCAGACAAATGGCTTGGCTTGTCACTGGAGACTTGTAGCACAATAGTTTATTTATGCCAAACATAATTTGAATATTAAGTAAAGATGTTCCGTGAAGACATTGTCAATTGATTACTGCATATATATTAAAACTCAAAATCTTTGATTATTAATGTGCATTGCTTTATTTAGACATCTTTAAATTATTATTATTTTTTTTTCAATATTTAGATTTTTTTAAAGCCTCAGATTTAGATATTCAAATAGTTGTTTCTCCTCCAACTATTTTCCTATTCAAACAAATAATACATCAATGGAAAGCTTATTTGTTTTGTTTTTTTTAATTGGTTTTATGTTTTTTCAGGTCCTGGGTCATAAATATGTCTAAAAAAAATTTTATTATTCTTTGCAGGGTAATGTTTA[T/A]GTAAAATGTCCAACTATCCCAGTAGCAATGGCTGTTGTCAGCTCTCTTCACGGGCGGTGGTTTGCAGGTAAATGCATCTCATTTTCTCCAGTTTTCCAAGCTCCTCTAGAGGAGATCTTTGCCTAGCTGTTTGACATTAAACCCAATCTCCTTCCTTTTAACAGGTAAAATGATCACAGCAGCCTACGTGCCCCTCCCCACCTACCATAACCTGTTTCCAGATGCTGCCACAGCCACGGAGGTCCTTAGGCCCATGAACCGGTGATCCAGCCAGTGGTTTAGGCTCGGACCTCTGCCTCTTCCTGACCCTGCTTCATCTTGAACCCCAATGCATCTGTATATTTACCGTACAACCGCTTCCCAAATGAACTGCTGTGAGTCTGAGACAGTCCTGTCATGGAAGGCCACCTGATGTATGAAACTAGATCTCACAGTCGGACTGTAATTTCATATTGTATTGTAGCTGGAGCGTGGATCTACAGTTCGAATCACCCTCTCTG
Associated Phenotype:
Not determined