ZMP
si:ch211-261n11.2
Ensembl ID:
ZFIN ID:
Human Orthologue:
CSDE1
Human Description:
cold shock domain containing E1, RNA-binding [Source:HGNC Symbol;Acc:29905]
Mouse Orthologue:
Csde1
Mouse Description:
cold shock domain containing E1, RNA binding Gene [Source:MGI Symbol;Acc:MGI:92356]
Alleles
There is 1 allele of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa41189 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa41189
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000112085 | Essential Splice Site | 566 | 817 | 12 | 18 |
| ENSDART00000134542 | Essential Splice Site | 547 | 798 | 14 | 20 |
| ENSDART00000140606 | Essential Splice Site | 357 | 377 | 7 | 8 |
| ENSDART00000144041 | None | None | 278 | None | 8 |
The following transcripts of ENSDARG00000074758 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 8 (position 23133482)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 8 | 22504658 |
| GRCz11 | 8 | 22525897 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGCTTCATAGAAACAGCCAATCACGATCAGGAGATCTTCTTCCACTACAG[G/A]TGTGAAACTCTCCTGCTTGATTTTGACTTGTGTGGTGGTGTTTTTGTGAT
Long Flanking Sequence:
CCAGGATGCTGAGGAAGGCTTGATTGCATATGAAGATGTTGGAGTAAAGACCACCCTTCCCTACCATATTAAAGACCTTGAAGGTGGTGTTTATCCACAGCTTGGAGACAAGGTACTTTAGACTCAATGTTGGGACAATAGGATGCATTTTCAAATGTGTCTAAAAAAATTTTTTTCATCTGGGAGGACGCAGGTCCTTAAAAAGCCCTAATATTTTACATATTTCCTTATACTTAACAGGTTGAAGCACAAGTTATACTGGCTTGCAAGTGTTTAACTGATTAAACTCTGTAGACACCCTGTTAAACCTCATGTCTCCACCAGGTGGAGTTCTCCATCAGTGAAGTAAAACGCACTGGACAGCAAAGTGCTGTGTCCTTCAAGATTCTTAACCGCGCAGTTGGCTCCAAGAGGCTGCTGGGATACATAGCAACTCTAAAGGATAACTTTGGCTTCATAGAAACAGCCAATCACGATCAGGAGATCTTCTTCCACTACAG[G/A]TGTGAAACTCTCCTGCTTGATTTTGACTTGTGTGGTGGTGTTTTTGTGATTTAGTAATGATGTATTCTAAACTGTGTCCAGTGAGGTTTGTGGGGATGTGGATAGCTTTGATCTTGGAGATACGGTGGAGTACACTCTCTCCAAGGGCAAAGGAAACAAAATCAGTGCAGAGAAGGTCACCAAAATTGCCGCTGGTATGTTAAGGCTGTTTATTAGATTTGAATATTTATTTGCTTCATGTGAGTGTAACAGCCCTGTGTTTGTCAGTGAATGGAGTTGGAGAGGATGTGAGCACTACAGTGTCCCTGGGAAAGGTGGTTCGGCCGCTGCGCAGTGTGGACCCGTCTCAGACTGAATATCAAGGCCTTATTGAGATCACGGAGGATGGTGAGTGATTTGGAAAATAACAGTTTTGGAGTGTGCTGTTTATTTTGTATATATGTGTAAGTGTGTTCTTTTAAAATCTATAATCAATTAATTTCATAATTTATTTTGTAATT
Associated Phenotype:
Not determined