ZMP
col4a5
Ensembl ID:
ZFIN ID:
Description:
collagen alpha-5(IV) chain [Source:RefSeq peptide;Acc:NP_001116702]
Human Orthologue:
COL4A5
Human Description:
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:2207]
Mouse Orthologue:
Col4a5
Mouse Description:
collagen, type IV, alpha 5 Gene [Source:MGI Symbol;Acc:MGI:88456]
Alleles
There are 7 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa1609 | Essential Splice Site | Available for shipment | Available now |
| sa21069 | Nonsense | Available for shipment | Available now |
| sa16790 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa1609
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000073827 | Essential Splice Site | 259 | 1659 | 13 | 49 |
| ENSDART00000108738 | Essential Splice Site | 233 | 1633 | 12 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52607601)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 7 | 50877351 |
| GRCz11 | 7 | 51152421 |
KASP Assay ID:
554-1550.1 (used for ordering genotyping assays)
KASP Sequence:
TTGGTGAAGTGTCAGGTTCACCAGATACAGTCATTCAACAAGGAGAAAAG[G/T]TATTCTTACCTCTTTGCTTCAATATGTTTTGACTCAYAGCCCAAGGAAGT
Long Flanking Sequence:
GCAAGCTTGCACAGACACTCCATTGCAAAATACTGGCATAAACTAAACTATCATATTTTAAAGACATGTTGGGGGGAAATGGAATTTAATGTTGTGCTTCTTGTCCGATCTGACCCACTTTACATCTTATATTATTCAGGCAGTGCAGATTACTGAGTTTTAAAGAAAACAGATGTTAAACCTGGCGATTTTGTAATAAAAATATTCACCAGAAGCTGTTGGGCTGGCTGTCTGAAAATTAAAAGTCTGTATGCGTACAGTATACCTCATTCCAACATTCTTGAAAATATCTTCTTTTGTGTTCATCAAAGGAAAGAAACTCAAACTGATTCAACTGGATCAAGTGTAAGATGAGTAAATGATGGCTGAATTAAAATTTTTGGGTGTGCTTATGTTTATGTTTGCAGGGTGACCGTGGATTAAAAGGACCTCCAGGGCCACCAGGACAAGTTGGTGAAGTGTCAGGTTCACCAGATACAGTCATTCAACAAGGAGAAAAG[G/T]TATTCTTACCTCTTTGCTTCAATATGTTTTGACTCACAGCCCAAGGAAGTTTTTAAGCAATGATTTCTTTGTTTTTTTGCCACACACACTGACAAAGAGTAAAAATGTTTCTCAGTGGTTTCAGACTGCGAGTAACAACCTTTATTCATTCTGTTGGTTCTGAGATACATCAGCAAACGTACCAAAGAGTGAATTAAATCAGCTCAAATTGTTTGAACTTCATGCAGCATAAACCATTAATCACTTAGTTCAAATGAAAAGGCAGGGCTGTGTGAGCTAAAGCCAATGCACTTTACTGGAGCAATCATTTACTTCACCAATTAACAGCATAGTTTATTACAGAGTTGTCTGGTTGGAAAAAGAACACCTATCAATCAAATTAGCAGCTATTACCATGACTTTACTATAGAAGCATTTACAAAAAACATTTTCAGAAAAGTTACATGTATATCAAATGTTTGAATACTGTTAATTTGTTAAATATTTTAAAGCATTAATGA
Associated Phenotype:
Normal
| Stage | Entity | Quality | Tag |
|---|---|---|---|
| Larval:Day 5 ZFS:0000037 |
whole organism ZFA:0001094 |
quality PATO:0000001 |
normal PATO:0000461 |
Mutation Details
Allele Name:
sa21069
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000073827 | Nonsense | 926 | 1659 | 33 | 49 |
| ENSDART00000108738 | Nonsense | 900 | 1633 | 32 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52624808)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 7 | 50894558 |
| GRCz11 | 7 | 51169628 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGATGTATCATACTATTGCTTTACAGGAGATGATGGTGTCCCAGGACAGT[C/A]AGGAAATCCAGGTTTTCCAGGGTTAAAAGGAGACAAAGGTGAAACAGGCA
Long Flanking Sequence:
TAGTGTTTCTCACTATTGTCATCTTTTCTACTTCAGGAGTACCGGGGGCGAATGGAGAAAAAGGAGACAGAGGCCCTCCAGGTCTGAGTACTCCAGGCTTCCAGGGTGATAGAGGAATTTCTGGACTTCCTGGACCTCCTGGTCCAGTTGGTCCACCTGGAGTTCCAGGCCGACCTGGACAAGATGGCCTACCAGGACTCCCTGGTAATGCACTGATAGCAATATCCACTAATTAGCAATGTGATTTTTTTTTGTTCTATATGTATGTCTTTTTTGGACTTTCTCTACTAACCCATTATCATTACTAAAGGATCTAAGGGAGAAATGGGCTCAATGGGGCCTCCCGGATCAAAAGGGAACCCCGGCAACCCTGGAGCTCCCGGCTTTCCAGGACCAAAAGGTCTGCAATCTTACTTTTTCTTAAACAATTAATTAAAGTCCCATGTTGAGTGATGTATCATACTATTGCTTTACAGGAGATGATGGTGTCCCAGGACAGT[C/A]AGGAAATCCAGGTTTTCCAGGGTTAAAAGGAGACAAAGGTGAAACAGGCATTCAAGGCCCGCCTGGCATAACCACATCTACAAGTGTACTGAAAGGACAAAAAGGAGAATCTGGTGTTCCAGGTGAGCCAAATCTGTTAGCTTCTAGGGTACACACACCATGATGGTCAACATTTTGTTTGTTAAAGTAAGTAAATAAGTTGTCCCTTTGCAGATTTCAGATATCTATACTCTAGCGTTGCAATATTAAAATCTCTCTAACAAAATCTACCTGGTTTATCAGCAAATATGTTGATTCACCACTATGTGCATAAATGTGTAAATCTCTTAGACCAGGACCATCTCTTATTTTAAGTACACTGAATCAAAGCTCAAATTTTAATAGAATCTTAAAGAAATCTTTTAATTAAAAGTGTATTTTTGTGATTCATCAATTGTCTTCTGTTTGCAATATAGGTTTCAGTGGACCGCCAGGACCAAAGGGTATTACAGGTATCTCTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa16790
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000073827 | Essential Splice Site | 1249 | 1659 | 39 | 49 |
| ENSDART00000108738 | Essential Splice Site | 1223 | 1633 | 38 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52626607)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 7 | 50896357 |
| GRCz11 | 7 | 51171427 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCAGGGACCTAAAGGTATCCAAGGTCCACCTGGTCCCCCCGGAAGAGCTG[G/A]TAAAGTCGAWATATTATATTACCTTTTGTYCAGGTCTGCCTTCTGGGTTC
Long Flanking Sequence:
GTATCCCTGGAGATAAAGGTCTTGCTGGTCGTGATGGTATTCCAGGACCAGCAGGTCAAAAGGGTGAACCAGGTAGGACTGTCTACAGAGGAATGTGTTGGATGTGCTTAGTGTAGCAAAAGAAGCTAAATAAATTTTTTTGTTTGTTTGCTTTTTTGTCAGGTGCTCCAGGCCTTGGTGGCCCAGGCTTGCCTGGTCAACCTGGTTTGAAAGGTAGAGATTTCTTATATATTCATTTTGTACACCAGTTATGAGTCCTTGTAATGATTTTCCTAGCAGATTTACTGTGATTTACTGTTTGTCTTTTGTTACAGGCGCTAAAGGAGATCCTGGTTTTCCGGGTCCTGCCGGTAGTGCTGGATTTCCTGGTCCAAAGGGTGATGCAGGATTTCCTGGCTTGCCTGGTCAGATTGGTTCTGTAGGACCACCTGGGCCTCCAGGCTTGCCACTGCAGGGACCTAAAGGTATCCAAGGTCCACCTGGTCCCCCCGGAAGAGCTG[G/A]TAAAGTCGATATATTATATTACCTTTTGTCCAGGTCTGCCTTCTGGGTTCCACCATGTCATGAATCATTATCAAATCAAGCTATAAAGAAGGTACCTGAAGTAAGATTTCTAAAAAAGAACACATTTTGTCGCAGCACTTCAAACATGGCCAACAAATATCCACACATATATAGACACAATTATTTGGTTCACAGTCTACTACTAATAATCAATTATGTGCTTTGCTCCTCTTTTTATGTATGCCTATACAATCCAGCAACTGCAGATTAAGGCTTGTAAATGTTATGGCAATCTCCACATAGTTCAGTTTAATAAGGTTTAACACATGCATTTTACCTACTGTCAGAACTTTTGGTTGTAATTTGATTTATAGATTTAACAAAACATCAGGTACCAAAATTCAAGTTTTCTTTGTTGAGAAGCGCTTCAAAAGGACTGTTATAATTGTGACCCAGAGGGCATACTGGCTTTCTTTTGTTTGCTTGTTTGACTGATTTGC
Associated Phenotype:
Not determined