ZMP
zgc:162584
Ensembl ID:
ZFIN ID:
Description:
vacuolar protein sorting 16 [Source:RefSeq peptide;Acc:NP_001091659]
Human Orthologue:
VPS16
Human Description:
vacuolar protein sorting 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14584]
Mouse Orthologue:
Vps16
Mouse Description:
vacuolar protein sorting 16 (yeast) Gene [Source:MGI Symbol;Acc:MGI:2136772]
Alleles
There are 6 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa20635 | Nonsense | Available for shipment | Available now |
| sa14249 | Nonsense | Available for shipment | Available now |
| sa20634 | Nonsense | Available for shipment | Available now |
| sa7028 | Nonsense | Confirmed mutation in F2 line | Not yet available |
| sa40632 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa7027 | Nonsense | Confirmed mutation in F2 line | Not yet available |
Mutation Details
Allele Name:
sa20635
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000083820 | Nonsense | 298 | 835 | 9 | 22 |
Genomic Location (Zv9):
Chromosome 6 (position 8680126)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 8880096 |
| GRCz11 | 6 | 9115635 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGGGACGGGCTTCTCCTGGTGGTCGGAGAGTGTAAAGAAACAATTCAGTA[T/A]CAACTGGATGATGATTCAATCCTGGTCCCGGAGCTAGATGGGGTTCGGAT
Long Flanking Sequence:
AATCGTTTCTAGAGTTGAACACAAAGGAGGACATTTTGAAGAAAGCTGAAGACCTGTAGCCGTTGACTTCCATAGTAGGGAAAAAACGAATACTACAAAAGTCGATGGTTACAGATTTCTTCAAAATATCTTCTTTTGTGTTCAACAGAAGAAACATTTAAACAAGTTAAAGGTGAGTAAATCATAACAGAATGTTCATTTTGAGTGGACTATTCCTTTAAACCTTCATTACTTTGTTGATAATTCTGCGTCTGTTAATGTTTTCTTGATGTAGGAGAAACTCAGTGAGGTCGAAACCAAAATCAAAACACCCCCCAGACAGATGGCATGGTAGGAAACCATTTTACCCTTTTTATGCATATTTTTCACTCACGATTTGTATTTCATTACTTTACTTTTTCTTGTAGGTGTCGCAGGCCCAAGAGTCAGGAGCCTTCGGCAGTGGTCATGTGGGACGGGCTTCTCCTGGTGGTCGGAGAGTGTAAAGAAACAATTCAGTA[T/A]CAACTGGATGATGATTCAATCCTGGTCCCGGAGCTAGATGGGGTTCGGATCATCAGTGGAACACACCATGAGCTTTTGCAAGAGGTCCCAGGTTAGAAAATGCATTGGGAAAAATGTCCACTGCTATTTAAAAGTGTTGGGTCTATAAGAGTGTTTTTAAAAGACTTACTTAAAGGGATAGTTTACCCAAAAATGTAAATTGTCTCCCCTCTAGTTGTTGCATACATTTACGAGTTTCTTTTTCTCTGTTGAACACAACTGAACATATTTAAAAGAAAGCTGGAAAGTGGTCACCTTTAACTTCCATTGTAGGACAATCAAATACTATGGAAGTCAATGGTTACAGGCCTTGGTTCGCTTGGTTCAAAATATCTTTTTTGTGTTTAACAGAAGAAAGAAACTCATAAAGGTGAACAAGTAAAGGGTGAGTAAATGATGACAAAATTTTCATATTTGCGTGAACTTTCCCTTTAATTTCTGTAATTGCAGTGTTTAATCAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa14249
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000083820 | Nonsense | 353 | 835 | 10 | 22 |
Genomic Location (Zv9):
Chromosome 6 (position 8679308)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 8880914 |
| GRCz11 | 6 | 9116453 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATTGCCTCAATGGCTCCTGGAGCTTTACTGCTGGAGGCACATAAAGAATA[T/G]GAGGTGAGACAYATTTACTATTYAGGACAAACATTTYTTTAACCTTAGCA
Long Flanking Sequence:
TCAAATACTATGGAAGTCAATGGTTACAGGCCTTGGTTCGCTTGGTTCAAAATATCTTTTTTGTGTTTAACAGAAGAAAGAAACTCATAAAGGTGAACAAGTAAAGGGTGAGTAAATGATGACAAAATTTTCATATTTGCGTGAACTTTCCCTTTAATTTCTGTAATTGCAGTGTTTAATCACATGATCTCTTCAGAAGGCATTCTAGCATGCTGATTTACTACTGAATTTCTTATTATTATCAGCGCTTATTACAATTATAGTGAATATTAACATTTGAATGTTTCACTGGGACTGGGAATAGTTTAATACATGCTGCCTGAGTTAAAGTATGTATTCTAAAGCTTTTGACCCCAAATGTACGAATGAATCGAATGGTTTTGGTCTCCATGTTTTACAAATGCACAAGTGTTATGATTTTCTGCAGGTGCTTGTGAGGAGATATTTAAAATTGCCTCAATGGCTCCTGGAGCTTTACTGCTGGAGGCACATAAAGAATA[T/G]GAGGTGAGACACATTTACTATTCAGGACAAACATTTCTTTAACCTTAGCACAGTATCCAAAAAGCATACAACTATAATAATGATAACTATAATTTGATAATTAGGAGTATTTTAAAAGTTGCACACTTTTATAAAAATGTGCAAAGTGTCTTTAGTTTTTACTTATTGAAATATTTCCCCCCAAAAATTAAATCCTGCCATCATTTAATCATTATTCACTTGTTCTCCAGGCTTTTGTTAAATACGAAGGAAGAATGTTGTGGGGAAAAACAGCCATTGTATATTATGTTTTGTTTCTATTATCAATTTCAATGGCTGTTTTTTCCCCCAACATTCTTCAAAGCATCTTCTTTTAAACAAAGAAAGAAATTCAGTTTAGAACCATTTGAGTTAGAGTAAATTTTAATTTTTTGGTGGGAACTATATCTTTAAAGTTTTCTGAAAGGGACAGGTAACCCCAAATTGTTCATTTGCGTTGGTGATTCATAAATAGCTAATAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa20634
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000083820 | Nonsense | 453 | 835 | 12 | 22 |
Genomic Location (Zv9):
Chromosome 6 (position 8676309)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 8883913 |
| GRCz11 | 6 | 9119452 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTCTGACCCACACTCAGTTCAAGCAGATGACCGTACAGGTGCTCATCGAC[A/T]GGTGAATAGGCTGTTTGAGGGGGCAAGGATTTCACTTTATTGGAATAATA
Long Flanking Sequence:
TCAGAAGGCAGACGAGTATCTGAGAGAGATTAAAGAGCAGAGTCTGCTGAGCGAAGCGGTACAACAGTGTGTGGAAGCCGCCGGGCATGAACATGAACCCGAGACACAGAAAACACTCTTGAGGGTGAGACACACATCTATCAGTAATTCAATTTAATTTTAGTTTATTTGTATAGAGCTTTTCACTATAATTATTGTTTCAAAGAAGCTTTACAAAAGGTGCACATTACTTACCTTGGATCTCATTAAGTGGCGCTGCACATAAAAAGAGAAGACACATTTCATTTACAGTAAGGAATGAATTTAACTTATCTCCTTGTGTCTTGCTCTCTCTGCAGGCGGCTTCGTTTGGGAAGTGTTTCTTGAGTAATTTTCCTCCGGAGCAGTTCGTCAGTATGTGCCGAGACCTGCGAGTGTTGAATGCTGTTCGAGATTATACCATAGGCATTCCTCTGACCCACACTCAGTTCAAGCAGATGACCGTACAGGTGCTCATCGAC[A/T]GGTGAATAGGCTGTTTGAGGGGGCAAGGATTTCACTTTATTGGAATAATATCGATTATTCAAATGAATATATGACTTTTACCTCTGTTTTATTAGATTGGTTTATCGTAAACTCTATCCACTGGCTATTGAGGTTTGCAGATATCTGAAGACTCCGGAATATCAGGGAGTAAGTCGTGTGCTCAAACACTGGGCCTGCTTCAAGGTATGTGAATGTGTGTTTGTGTGTGTCAGGGTCAGAATTGAAATTTTTCTTGTTTGTTTGTTGTTGTTGTTGTTTTTTTTTGTAATGGCCACGTTTTTTCCAATGTATTTTTTGTAATTATGAATTTTATGATAATTATTTAAATTGTAACTGTGTTGTCTTTTATGTCAAATATAGTTAATCGTCGTACTAAAATTCACATTTCAAAACAGGAAAAGTTTAGGCTGCAATAATATGTCAAAAAATGTCTTTTGTTTCTGGTAATATTATAATAGTGGCTATTAATGTTTATAAAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa7028
Status:
Confirmed mutation in F2 line
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000083820 | Nonsense | 460 | 835 | 13 | 22 |
Genomic Location (Zv9):
Chromosome 6 (position 8676192)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 8884030 |
| GRCz11 | 6 | 9119569 |
KASP Assay ID:
554-4968.1 (used for ordering genotyping assays)
KASP Sequence:
ATRTATGACTTTTAYCTCTGTTTTATTAGATTGGTTTATCGTAAACTCTA[T/A]CCACTGGCTATTGAGGTTTGCAGATATCTGAAGACTCCGGAATATCAGGG
Long Flanking Sequence:
CTTGAGGGTGAGACACACATCTATCAGTAATTCAATTTAATTTTAGTTTATTTGTATAGAGCTTTTCACTATAATTATTGTTTCAAAGAAGCTTTACAAAAGGTGCACATTACTTACCTTGGATCTCATTAAGTGGCGCTGCACATAAAAAGAGAAGACACATTTCATTTACAGTAAGGAATGAATTTAACTTATCTCCTTGTGTCTTGCTCTCTCTGCAGGCGGCTTCGTTTGGGAAGTGTTTCTTGAGTAATTTTCCTCCGGAGCAGTTCGTCAGTATGTGCCGAGACCTGCGAGTGTTGAATGCTGTTCGAGATTATACCATAGGCATTCCTCTGACCCACACTCAGTTCAAGCAGATGACCGTACAGGTGCTCATCGACAGGTGAATAGGCTGTTTGAGGGGGCAAGGATTTCACTTTATTGGAATAATATCGATTATTCAAATGAATATATGACTTTTACCTCTGTTTTATTAGATTGGTTTATCGTAAACTCTA[T/A]CCACTGGCTATTGAGGTTTGCAGATATCTGAAGACTCCGGAATATCAGGGAGTAAGTCGTGTGCTCAAACACTGGGCCTGCTTCAAGGTATGTGAATGTGTGTTTGTGTGTGTCAGGGTCAGAATTGAAATTTTTCTTGTTTGTTTGTTGTTGTTGTTGTTTTTTTTTGTAATGGCCACGTTTTTTCCAATGTATTTTTTGTAATTATGAATTTTATGATAATTATTTAAATTGTAACTGTGTTGTCTTTTATGTCAAATATAGTTAATCGTCGTACTAAAATTCACATTTCAAAACAGGAAAAGTTTAGGCTGCAATAATATGTCAAAAAATGTCTTTTGTTTCTGGTAATATTATAATAGTGGCTATTAATGTTTATAAATAGAATATAAATGTAAGCATGTTTATGATGGAGCATCATTATATGACACGACAAACAATGTTTGTTCTTGGCATTATGTTAGTGCAAGTTATGCAAAAACTTTCTTTTGTTTTCTTTA
Associated Phenotype:
This allele has been associated with this phenotype by genetic linkage analysis and may not be causal.
See FAQs for more info.
See FAQs for more info.
| Stage | Entity | Entity | Quality | Tag |
|---|---|---|---|---|
| Hatching:Long-pec ZFS:0000033 |
eye ZFA:0000107 |
increased size PATO:0000586 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
head ZFA:0001114 |
increased size PATO:0000586 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
inner ear ZFA:0000217 |
increased size PATO:0000586 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
iridophore ZFA:0009199 |
absent PATO:0000462 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
melanocyte ZFA:0009091 |
quality PATO:0000001 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
whole organism ZFA:0001094 |
anterior/posterior axis BSPO:0000013 |
decreased length PATO:0000574 |
abnormal PATO:0000460 |
Mutation Details
Allele Name:
sa40632
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000083820 | Nonsense | 591 | 835 | 16 | 22 |
Genomic Location (Zv9):
Chromosome 6 (position 8672258)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 8887964 |
| GRCz11 | 6 | 9123503 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGTGATGTACCTGAAGAATGAGCTAAACAGAGGAGACTTCTTCATGATGT[T/A]GAGGAACCAACCTGTGGCTCTGAGCCTCTACAGACAGGTACACACTTGTG
Long Flanking Sequence:
AATCGCCACCAAAGCATACGAGAGCGGACGAACGGAGCTCGCCATTAAGGTGCATGCATAAATAGACTGACTGTATGCTCTCAAAAGCACAAGCAGAATATTATGGGTTGTCAGTCAGCTTTTGTTATCCTCTCCTGATTTTAGCTGTTGGAGTTTGAGCCTCGCTCTGGTGAACAGGTCCCACTGCTGCTGAAAATGAAGAAAAGTCCTCTGGCTTTGAGCAAAGCCATTGAGAGTGGCGACACAGACCTCGGTACACACATTCACACACACCCATTCCAAATATCATGTGATACCTACTTGAGGAACAATTTATATACATGCTGTACCATTTAAGTGTGGGGTTTGTAATGTCAGGCTGGTTTTATTTAATGAAGTAAAACAAAAAACTGTAAAACAATCCAATGAATACAAAACTGTTTTTGCTTTTCACATGCTAGTGTACACCGTGGTGATGTACCTGAAGAATGAGCTAAACAGAGGAGACTTCTTCATGATGT[T/A]GAGGAACCAACCTGTGGCTCTGAGCCTCTACAGACAGGTACACACTTGTGTGTTGTCATGATTACCGATTGTTATAAGGTAAACAACATATACTTTCTGAGGGTTAGTATTACCGTTTGAAATTTTCATTAGCTATAGAACTGTAATTGATTTTCGTGATTTTAAAAACTGAAGGTATATTCTGTATGTATGTATATATATATATATATATATATATATATATATAGATGCAAATATATAGATGTATAGATTATATATATATATACAGTTGACAAGCCTTGTTGTCGATCCCAATTTTAAGATAAACAAATAATAACTTCACTTCTAGTTGATCACTTGGGAAAAGTGGCAAAAGGTCGTTTTTTTTTTTTTTTCTGATGAATCATCTGTTGAACTGCATCCCAGTCATCACAAATACTGCTGAAGAGCTATTGAAACCTGCATGGACCCAAGATTCTCACAGAAATCAGTCAAGTTTGGTGAAAGACAAATCATGGTTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa7027
Status:
Confirmed mutation in F2 line
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000083820 | Nonsense | 635 | 835 | 17 | 22 |
Genomic Location (Zv9):
Chromosome 6 (position 8670174)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 6 | 8890112 |
| GRCz11 | 6 | 9125651 |
KASP Assay ID:
554-5051.1 (used for ordering genotyping assays)
KASP Sequence:
CAAGATGACGATCACGAGGAACTGGGCAATTTCTAYGTAAAAGCCAGCTA[T/G]AAAGAGCAGGTAGGCAAAAGCTTTTTNNNTTCTAGTTCCTTTAGCAAGAA
Long Flanking Sequence:
TAATCATTGGGCTATTACAGCCATGTGTAATCTAATCTACTCATTGTTTAAGAGGTAAGGAGCTGTAGAGAATCTAAATTCTTATCTTTAACATTGTAGTATTGTCTTTAAAAAAGCCTGTGAGTCCATCCTTGAGATCTTTTTGCTCACAAAGGCGAGCAAGAATTAAAGCAACTAAAAGACAAACTTTGTCTAATTTTATTACATTTCAGTTTTCACATTAAAGCGTATTCCTTGTGAACAGGAAGAAAATAATTGGGCATTACAAACACTATTAGAATCACTCAAATTGTTTGGGTTAAAATAATTGTAATAATAATTGAATAATATTTCTTCAACAATAAATAATTGAAGCTTTATTGAAATAAAGCTTGGATTAAAGTTAAAATCTTGATTGTTTTTCAGTTTTGTAAACATCAGGAGCAGGATACGCTGAAAGATCTTTTCAATCAAGATGACGATCACGAGGAACTGGGCAATTTCTACGTAAAAGCCAGCTA[T/G]AAAGAGCAGGTAGGCAAAAGCTTTTTGTTTTCTAGTTCCTTTAGCAAGAATGCATGTGACTTAAAATATGAATGTGTGTGTATGTGTAATTGCAGAGACTGGAAGCACGGATTGCTCTTTTACAAAGTGCCGTGGACGAGTACTACAAGGCCAAGAATGAGTTTTCTGCCAAGGTGAAAACCACAGAATTTTCTGCATGGGAGAGAGTTCAGTATCTGAGCTGCCAGAACATTAAAGGGGACCTATTATGAGCCTTTTTACAAAATATAAATTAACTCTTTGAAACTATACTTTTTAGGGTATGATTCAAGTTGTTCTATTTTGGTGACTATCGCTTTAAATTCAAATGAGATTTTCTCTTTTCAAAAGAGGGCAGAGCTACAAATGCCTATGTGTCAGCATAGTGGTAGATTCAGAAACAAGACTAACATCTTATGTTAATGTGGGAGATATTATCACTAATGGGCGGGGCTTTCCCCCTCTGATGACATGTACAAAGG
Associated Phenotype:
This allele has been associated with this phenotype by genetic linkage analysis and may not be causal.
See FAQs for more info.
See FAQs for more info.
| Stage | Entity | Entity | Quality | Tag |
|---|---|---|---|---|
| Hatching:Long-pec ZFS:0000033 |
eye ZFA:0000107 |
increased size PATO:0000586 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
head ZFA:0001114 |
increased size PATO:0000586 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
inner ear ZFA:0000217 |
increased size PATO:0000586 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
iridophore ZFA:0009199 |
absent PATO:0000462 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
melanocyte ZFA:0009091 |
quality PATO:0000001 |
abnormal PATO:0000460 |
|
| Hatching:Long-pec ZFS:0000033 |
whole organism ZFA:0001094 |
anterior/posterior axis BSPO:0000013 |
decreased length PATO:0000574 |
abnormal PATO:0000460 |