ZMP
si:dkey-193c22.2
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to vertebrate chondroitin sulfate proteoglycan 4 (Melanoma-associated) (CSPG4)
Mouse Orthologue:
BC067074
Mouse Description:
cDNA sequence BC067074 Gene [Source:MGI Symbol;Acc:MGI:3040697]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa45218 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa15427 | Nonsense | Available for shipment | Available now |
| sa20499 | Nonsense | Available for shipment | Available now |
| sa40521 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa45218
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114078 | Nonsense | 802 | 2304 | 2 | 11 |
| ENSDART00000142897 | Nonsense | 802 | 2370 | 2 | 9 |
Genomic Location (Zv9):
Chromosome 5 (position 41855028)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 39629745 |
| GRCz11 | 5 | 40229898 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAATGGTGTAAGTCTGACTGATGACGAACTTTGTTTTAAATTGTTGACTT[T/A]ACCAAGAAGAGGAATTATTGAAGTGAAAAATGCCAAGTTGGATTTGAATT
Long Flanking Sequence:
GGCTGTGGCACTTGAGTATAAAATCTCCAATAACACAGGTCTGGAAGTGACTCAAGGAGAGATGTACCTGATAAGCACCAACCAACTGGCTGTGTGGACCAATGCCTTGAAGCAGGTGGTTGACATTCGTTATGATGTGATTGAGCCACCAAAATTCGGTGAGCTCCAAAGGATGCACTCAAGTGGAGAATGGAAGATCACCAGCTCATTTTCCCAAAGAGTTCTTGAAAAGGGCCGTTTAAGGTACCTTAGCACCTATCAGTCTATTCAAACAAGTAATAGCACGGACCACTTCAAATGTAAAGTAACTGTGGCCTCCAGAGCTAGTGAAGAACTTGCTTTTCCAATTACTGTAAAGTGGATAAACTACACAATAGAGAACAACAAACCTGTAGAGCTGGACAAAATTACAAGAGCTGTAATTGACTCTGATCATCTGTATGTAAAAGCCAATGGTGTAAGTCTGACTGATGACGAACTTTGTTTTAAATTGTTGACTT[T/A]ACCAAGAAGAGGAATTATTGAAGTGAAAAATGCCAAGTTGGATTTGAATTCTACATTTTGTCAAAGGGACATCACAGATCTGAAGGTTGAATATCAACTACTAGAAAGATCATTTGAGGATACCACTGATGAATTTGTTTTCCACATATTTTCAAAGCATGCACATTCTGCTAGTCACATTTTCACAATCAACATTAAAGCAGATGTCAACAGCATTTTCATGACAAACAATGGACTGTCACTTCTTGAAGGTGAAAGTAAACTTATTACAAAGAATGAATTGTTTGCTGAAACTCTGAGCACTAAAGAAATCTACTACACAATTACAAAGACGCCAAACCATGGGAAGTTAATGCGAATCAACTTGTCTAACTCTACCAAAGACTTTGACAAAATTATGTCCTTTACTAATCAGGATGTTCTTGAAGAGCGTATTATGTATGTTCATGATGACAGTGAAACAACTCAGGATGATTTTACCTTCATAGCCTCCACAAGCC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa15427
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114078 | Nonsense | 933 | 2304 | 2 | 11 |
| ENSDART00000142897 | Nonsense | 933 | 2370 | 2 | 9 |
Genomic Location (Zv9):
Chromosome 5 (position 41855420)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 39630137 |
| GRCz11 | 5 | 40230290 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATGGGAAGTTAATGCGAATCAACTNNNTGTCTAACTCTACCAAAGAYTTTGAC[A/T]AAATTATGTCCTTTACTAATCAGGATGTTCTTGAAGAGCGTATTATGTAT
Long Flanking Sequence:
TAGAGCTGGACAAAATTACAAGAGCTGTAATTGACTCTGATCATCTGTATGTAAAAGCCAATGGTGTAAGTCTGACTGATGACGAACTTTGTTTTAAATTGTTGACTTTACCAAGAAGAGGAATTATTGAAGTGAAAAATGCCAAGTTGGATTTGAATTCTACATTTTGTCAAAGGGACATCACAGATCTGAAGGTTGAATATCAACTACTAGAAAGATCATTTGAGGATACCACTGATGAATTTGTTTTCCACATATTTTCAAAGCATGCACATTCTGCTAGTCACATTTTCACAATCAACATTAAAGCAGATGTCAACAGCATTTTCATGACAAACAATGGACTGTCACTTCTTGAAGGTGAAAGTAAACTTATTACAAAGAATGAATTGTTTGCTGAAACTCTGAGCACTAAAGAAATCTACTACACAATTACAAAGACGCCAAACCATGGGAAGTTAATGCGAATCAACTTGTCTAACTCTACCAAAGACTTTGAC[A/T]AAATTATGTCCTTTACTAATCAGGATGTTCTTGAAGAGCGTATTATGTATGTTCATGATGACAGTGAAACAACTCAGGATGATTTTACCTTCATAGCCTCCACAAGCCCTGTAGCAAAGCTGTATGTTAGAGAAAATGATGTTGGCTCTAAGGAGGGTGTATTTAATATCTCTATAAAACTAGTGAACGATGAAAAACCCACTCGCATCGTAGACAAAGTTTTTAATGTTGTCAGAAACAAACAGAGATTGCTTACACTCGAGGACCTGTGCTATCATGACTCAGATTCAGACTTTAGTGATGGCGAGCTTGTCTATACTCGGCGTGGTATCCCAATGGGCGATTTGGTTCTTGTGAATGACACTTCACACAAGCTGTACCAATTTCGTCAAGAAGACTTAGAACAGAAACGAGTGCTGTTCATACACCACGGGATGAACTCTGGCCGTTTTGTCCTGTTTGTGTCAGATGGCAAACACTACGTGTCCTCTCTGTTGGAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa20499
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114078 | Nonsense | 1728 | 2304 | 9 | 11 |
| ENSDART00000142897 | Nonsense | 1726 | 2370 | 9 | 9 |
Genomic Location (Zv9):
Chromosome 5 (position 41872200)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 39646917 |
| GRCz11 | 5 | 40247070 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAATCTACTCACCAAACAACCTGAATCCAAACGTAGCTCTTATGAGATTT[G/A]GTACCAGGTCACTTCACTTCCACAGCATGGCGTCATCGTTGTGGGGGAAC
Long Flanking Sequence:
AAGTAATTTATTTAAAGGTTTTACATGCATTTTTATGGTGAATCTTTTTCTTGTTTCTGTTTTAAACAGGTGGATGATGGTGAAGTAGCATATCAGCAAAATCATGTGACTTCTTTGGGATGGGCAGCGCTAGACAAGTTCACATTTACAGTGTCGTCTCCTCCTGCCATGCTTGAAAGCCAGACGTTTGACATTGACATTTCTTATGAAAATGTTGGACCTGAACAAAGTTCTGTGCTCCTCGTAAATAAAGGTATGGTGTTAAATTAAATTCTGACAATGATTTTTAATACATTGTTTGCACTCAATCAGTTTGAATATTGAATTACTACATTACAAGTTGACTCAAAGCTTTTGTCAAAGAAATTAATATCTTTTTTTTATATATCCAGGTGTGGAGGTTGCTGAAGGTGACAAAGTACTAATTGACAAATCAACGCTGGACGCATCCAATCTACTCACCAAACAACCTGAATCCAAACGTAGCTCTTATGAGATTT[G/A]GTACCAGGTCACTTCACTTCCACAGCATGGCGTCATCGTTGTGGGGGAACGAAATCTTACAAAAGAAAAGCCGAATTTTTCTCAGTTCATCCTTAACAAGTACGGAATCACATACCATCATGACAACTCCGAGACCACCTATGACCATTTTGAGTTTGATGTGTATCTCAACCTGAAGAGCAAACCACCATCTCGACCCCTAGATACCTCTGAGGTTGTGTCAGAATCATTCAACATCACTATAATCCCCATAAATGATCAACCTCCTGTTCTGAAAACCAAAACCCCCAGCCTAAAAGTGGTTCAGGGGGACACTGTGACTATTGGACCCGACAACTTAAATGTGGTTGATCTTGATAACCCACCCACAGAAATTCAGTACACTGTGATTAGCAAACCTGGCAATGGTTTCTTAGCCATTGCAGATCACTTGAACGAGTCGGTGGACTCCTTCTCTCAGGCTCAGATTAATAACGGAGAGGTATTTTTCATCCATGATG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa40521
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114078 | Essential Splice Site | 2205 | 2304 | None | 11 |
| ENSDART00000142897 | None | 2203 | 2370 | 9 | 9 |
Genomic Location (Zv9):
Chromosome 5 (position 41873632)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 39648349 |
| GRCz11 | 5 | 40248502 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAACGCGTGACCAAATCCGGGTCAAGATTTAAAGGTCGCAACCGCTGGGG[T/C]AATTCAAACAGCATTGACATTGGTACCACTAACTCAAAAACAACCCATGG
Long Flanking Sequence:
GTAACGTTTCCGAATGGAATTCGAATTCGGCTGAAGCCACATTTTCTAAATGTGTCTGAGCTGGCTTTGTTGAGCGATAGTGACCCGTTGTTTGAAATTACCTCACCACCAGACAATGGTAAGATTGTCCGTATGATTGGTGGTAAGGGAAGGAAAGCTGAATCAGTGGAGTCTTTCACTTTCAGTGAACTCCTCCAGCAAAAACTGGCCATTGAATTAAAGGCGAACCTGACGGGCGTCCAGGAAGTAAATGACTCTTTCAGATTTGTTCTTAAAGCCAATAACGTCCAACCAGCCAATGGGATTTTCACTTTCAGCATTGTTCCTCATGTTCCTACTATGGAGATATCCACAGTGACAGCAATGTCTACAATCAGACCTGTTTTTCATAGCCAAACTGCTGCGTTGAGCTTGTTTACATCTTCAACGTCTCCAGCTGTGCAGCCAACACAACGCGTGACCAAATCCGGGTCAAGATTTAAAGGTCGCAACCGCTGGGG[T/C]AATTCAAACAGCATTGACATTGGTACCACTAACTCAAAAACAACCCATGGGGTGGAGGAGATTTCCCCTATAAATAATACTCCAGTGAAAGTAGAGTCAGTTTCCCAGACGGGGTCATCCTCAAACTCCATGATCATCCTTTTGCCTCTTCTTGCTCTTCTTCTTCTGGTCATCATTGTGGTGGTGTTGGGGCTGCTCTTAAGACCAAAGTGGAGGAAGAAACCAAAGCCTTCAAAAAGCATGTCAGGCTCTTCCTCTCAACCGGACGACTTGTCCCAACCAGAGCTGTCACACTGGCCTGCAACCATCCCTGTTGTAACCGTAACTCCTCTTATTTCAAGAAATGCTGGAAGTTCAACTGTAACCAGACTGCAAACCAGAAGTGAAAACTCCCCATCTGGTCCATCTGTGTCTTTGTGCTCTTTTGGAGACCTGGAGCCTGAAGTCTCACAGCTTTGCAGGACCACCAACCCGACCTTGCGAAACAATCAGTACTGGGT
Associated Phenotype:
Not determined