Busch Lab

ZMP

xab2

Ensembl ID:
ENSDARG00000007092
ZFIN ID:
ZDB-GENE-040426-685
Description:
pre-mRNA-splicing factor SYF1 [Source:RefSeq peptide;Acc:NP_001038248]
Human Orthologue:
XAB2
Human Description:
XPA binding protein 2 [Source:HGNC Symbol;Acc:14089]
Mouse Orthologue:
Xab2
Mouse Description:
XPA binding protein 2 Gene [Source:MGI Symbol;Acc:MGI:1914689]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa40167 Nonsense Mutation detected in F1 DNA Not yet available
sa33316 Nonsense Mutation detected in F1 DNA Not yet available
sa33317 Nonsense Mutation detected in F1 DNA Not yet available
sa44578 Nonsense Mutation detected in F1 DNA Not yet available
sa14562 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa40167
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011780 Nonsense 139 851 4 19
Genomic Location (Zv9):
Chromosome 3 (position 53963682)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 53070997
GRCz11 3 53325660
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACGGAGCAGACGGACATTCGATAGAGCATTAAGAGCTCTGCCCATCACC[C/T]AGCATCCTCGCATCTGGCCTTTGTATCTTCGCTTTGCCCGGAACCTGCCT
Long Flanking Sequence:
TTTGCATTTGAAGTATACTACAGGTCTGTTTTTTTCTTATTCTCTAGCCTCTTTCAGCAATAAGGAATTTAACACATAGAACTGCCACTAACCAGATATTTTTTAACAGATTATTGTCTGTAAACCCAATTTAGTTTCGGAATTACTCAAATCAGCCATCTGGCTCAAACAAACAATCCACATTCACTCGCCAACATCATGTCACTAAAATCATCTTACTTTCTCATTCCGATACCTGCTTTGAACTTCAGCAGATCATCTTGACCTCATCTATGTGCCTAAATGCAGTTTCTCATTTGATCGACTCGTATTTGCGCTGTCAAGCAGTTGAACAGTGTAGTTTATGTGATTTGATGTTGGCCCATTTAAAGCAGTGTGAATACTTTTCTCCTCAGATGCCGAGGATATGGATTGATTATTGTCAGTTCATGGTGTCTCAGTGCAAAATTACACGGAGCAGACGGACATTCGATAGAGCATTAAGAGCTCTGCCCATCACC[C/T]AGCATCCTCGCATCTGGCCTTTGTATCTTCGCTTTGCCCGGAACCTGCCTCTACCAGAGACCGCTATCCGTGTTTACCGCCGCTACTTGAAGGTAAGAGTTGGGTATGAATCTTAAAAAAATATATAGCTTAAATGAGTACATCACTCATTGATCTCGCTTTTAAATTATTATTTTTTATAGGATGCTTTACAATAATGTATTTGTGCATATGCATTAAGCCACCTGTCAACAGCACACGACAAGCAACGAAGTCATTCACTTCCAATGCAAAGTAGTCTGGAACTCTGATCCAGAAATTTCGGATCTGATTTGACCTGTGGATACGTTAAAATATTTGAACTTCAGCTACTAGACAGTATATGACTGGCCGACCGGATGTGATGTATTCCAGTGTTGTCCTAGCAGGTCCATGCGCGTGAGATGAGAAATAGAAAATTTTCATTATACTTTTTTTTTCAGAAATAAGTCTATATTTAAAAACTAAATATATTCATAAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33316
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011780 Nonsense 256 851 6 19
Genomic Location (Zv9):
Chromosome 3 (position 53967113)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 53074428
GRCz11 3 53329091
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAGAGGAGGCCTCACTCGCTTCACTGACCAGCTGGGCAAACTCTGGTGCT[C/A]AATGGCCGATTACTACATCCGCAGTGGCCACTTCGAGAAGGTAAACCACG
Long Flanking Sequence:
TCTATATTTAGCGTTATCAGTAACAGTAGTGGTAGGTATGTATTTTTTTTTTTAAAGTACTGAATATTTTACAGTTTATTTTTCTTCAGCTGATTATTTCTTCATTTTTATTGTAATAAAGTTACAGGTTCTAAGTTCTGTTTGTTTGAACCAACATTTCCTACAGACTGTTTTTGTAATAACGAAAAGCAAATTACAATTGTCTCTTTTCCTTATTGGCTGATCTAAAAAAATGGTCTGATCCTTGACTAAAAACCATAATGTGATCCGAATCGTGAGATTTGTGATCCGCTACACCACTAATAAATACATTTGTGAATTATGTGCAACATATTTTTCAAATTTTTGTTTTGTAAATGTAAATTTTGAATTCCAGTTGTGGCACGAGCTCTGTGATCTCATCTCACAAAACCCGGACAAGGTGACCTCGCTGAACGTGGGAGCGATTATCAGAGGAGGCCTCACTCGCTTCACTGACCAGCTGGGCAAACTCTGGTGCT[C/A]AATGGCCGATTACTACATCCGCAGTGGCCACTTCGAGAAGGTAAACCACGCGTTTAATAAAACACAAAGGACTCTATTCTAACAATCTAAGTGCAATGTCTAAAGAGGATGTCTAAAAACTCTGCGTCATTGACTTAGACCAGCTTTTTGATGGTCAATGATGTGGTTTATTTCAGTCGTCTCAAAATAGCAGGGTGCCAACAATGTGCCTTAACCTTCTTTTCAGACCAACACACCCATAAGTGCACAAAGTGGCGCAAATACTTTAGTTATTTAAACAACTTGGCACGAAACGTGAAAATGACACGTGCGCCGTTCTAAAAATAGCAAAAAAACAAAACAAAGACTCACCAATTACTTATACTCAAATTGATGACATTTTCTGTCTTGCTTCCTCAAGGCTCGAGATGTTTACGAAGAAGCCATCCTAACAGTTGTGACCGTGCGAGACTTCACCCAAGTTTTCGACAGCTACGCGCAGTTTGAGGAGAGCATGATCG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33317
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011780 Nonsense 296 851 7 19
Genomic Location (Zv9):
Chromosome 3 (position 53967592)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 53074907
GRCz11 3 53329570
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAACAGTTGTGACCGTGCGAGACTTCACCCAAGTTTTCGACAGCTACGCG[C/T]AGTTTGAGGAGAGCATGATCGCTGCCAAAATGGAGACCACATCTGAACTA
Long Flanking Sequence:
AGCTGGGCAAACTCTGGTGCTCAATGGCCGATTACTACATCCGCAGTGGCCACTTCGAGAAGGTAAACCACGCGTTTAATAAAACACAAAGGACTCTATTCTAACAATCTAAGTGCAATGTCTAAAGAGGATGTCTAAAAACTCTGCGTCATTGACTTAGACCAGCTTTTTGATGGTCAATGATGTGGTTTATTTCAGTCGTCTCAAAATAGCAGGGTGCCAACAATGTGCCTTAACCTTCTTTTCAGACCAACACACCCATAAGTGCACAAAGTGGCGCAAATACTTTAGTTATTTAAACAACTTGGCACGAAACGTGAAAATGACACGTGCGCCGTTCTAAAAATAGCAAAAAAACAAAACAAAGACTCACCAATTACTTATACTCAAATTGATGACATTTTCTGTCTTGCTTCCTCAAGGCTCGAGATGTTTACGAAGAAGCCATCCTAACAGTTGTGACCGTGCGAGACTTCACCCAAGTTTTCGACAGCTACGCG[C/T]AGTTTGAGGAGAGCATGATCGCTGCCAAAATGGAGACCACATCTGAACTAGGCCAGGATGAAGACGGTGAGAGATTTTTCACAGAAGACCTTACAGGAATTGAGCCTTGACCTTGGTCTTACAGAAGTGCTTATTTCTCTACTCTAGATGACATTGACTTGGAGTTGCGGTTGGCTCGATTTGAGTCTCTTATAACTCGCCGGCCGCTTTTGTTAAACAGCGTGCTGCTGCGTCAAAACCCTCACAACGTTCACGAGTGGCACAAGAGAGTCAAACTCTATGAGGGCCAGCCTCGACAGGTCAGAACCATTACTTACATTTGAATATCTATTCATATTTGTTTTAACATTACTACTATGTTGGTGTTTTTGACGCGTCTTGTGGTGTTGTTTTTCTTGTAGATCATCAACACGTACACGGAAGCTGTGCAAACAATAGATCCTATGAAAGCCACTGGAAAGCCTCACAGTCTCTGGGTGTCCTTCGCCAAATTCTACGAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa44578
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011780 Nonsense 476 851 11 19
Genomic Location (Zv9):
Chromosome 3 (position 53979012)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 53086327
GRCz11 3 53340990
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGAAAAGCCGAGTATTTTGATTCATCTGAGCCTGTGCAGAATCGTGTGTA[T/A]AAATCCCTGAAAGTGTGGTCCATGCTTGCAGACTTGGAGGAAAGTCTTGG
Long Flanking Sequence:
GGATAAAAGCGTCTGCTAAATGACTAAATGTAAATGTAAACATTAAATGTCGCAATGTCTGATAATAAAAATAACCTTTGTTACTGACATGGCATTAATTAAAAATATACATTATGATGAGTAGATTCTGTAATGTTTATTTATTTATTTATTTATTTGTTTATTCTTTTGTCTTTTAGCATTTTGATGAAGATTAATTTGAAAAAAGGTTTTAAGGTTATGTTTATGTTTATGATAATTGTAGTGCTTTATTTGTTAATATCCAGAGTTGTTTTGCAGCCTAGATTTGATGCTTGCTTAAGCACCATAGTTTATGTCAAGCCATATGGGGCTTAAAAGAGATCAGTGAGAATCTTCATGTCATCTGAACATTTCCAAATGTTAACAGTCAATGTTTTTTTTTTTTTTTTTTTACATATATCTATACAGAAAGCTACAGCAATTCCAGCGAGAAAAGCCGAGTATTTTGATTCATCTGAGCCTGTGCAGAATCGTGTGTA[T/A]AAATCCCTGAAAGTGTGGTCCATGCTTGCAGACTTGGAGGAAAGTCTTGGCACATTCCAGGTATTTGTTATTATTGTAAAACAAGCTAGATTAAACGATCAGATTGATGCTGTTTTGTGTGTTAATGAAGCTGTTGTTTTTGTCAGTCCACAAAGGCAGTGTATGACCGCATCATTGACCTCCGCATCGCCACACCTCAGATCATCATCAACTATGCCATGTTTCTTGAAGAGCACAACTACTTTGAGGAAAGCTTCAAGGTATAGGACTTTAACCAGATTTGTCACTTTATTTGTTGTTATTATTTATTAACAGTGATTGTTTTAATTACATTTTTTTGTCTAGTTAAATTAGATGTGTTCACCTTTTAATTGATTTACACGTTATAATTTACATGTTATAATAAAAAAAAATCATCTATTCATTTGTCCTTTAATTTGAAACTTACTTAACTTGTATTTTAATTAAATTATTTGTATTTTAGTATTTTTTTACATTAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14562
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000011780 Essential Splice Site 831 851 18 19
Genomic Location (Zv9):
Chromosome 3 (position 53985060)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 53092375
GRCz11 3 53347038
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
YGATGATGATGATNNNNNNGATGAGGATGCGGAGGAYGCSGAGCCAGAGG[G/T]TTAGTTTTTATGAGAYTGGKGGTGTKATGGTGGASTAATTCGTATTAAAA
Long Flanking Sequence:
TTTTTTCCTAGAATGATAATCCAATGTTTGCATGTAAAATGTATTCATTTAGCACAAGTGAACGTGGTAAGCAAATAGACAATTATAGGTGAAATGAAAGCACATTAGTTCCTCCTTGTGTGGCTAAACTGTTTTTAATGGCATGTGTTTCAGTGTCAGATCTTGCTCCGGGGCAGAGTGGCGTGGACGACATGAGGCTGCTGGAGCAGAAGGCCCAACAGCTGGCAGCGGAGGCTGAGCGAGACAAACCCAAACCTAAAGAAAAGATTCTTTTCGTGAGGTATGAGCTGCACCCACATCAGTCAGAGGGCATATTGAGCTTATTGAGAAGCCAGTTTCTATTGTTCTGTTTACACAACTGGAGTTTTGTTTGTCTTGTTATAGGAGCGACACCTCTCGCAGTGAACTCGCTGAACTGGCCAAGCAGGCTAATCCAGATGAGATCGACATTGATGATGATGATGATGAAGATGAGGATGCGGAGGACGCCGAGCCAGAGG[G/T]TTAGTTTTTATGAGATTGGTGGTGTGATGGTGGACTAATTCGTATTAAAAAGTTTGGGTTTTTAGTTTAGTGTGCATGTGTTGCAAATAAATACAGCATTATTTTAACTACTTTTTTTTTTTTTAAATACTATATTTGCGTTTTATATCATATGTGACCATGGACCACAAAACCAGCTATAAGTGTATTTTTTTGTAAAATTAAGATTTATAAGGTTTTATTTTATTAAGATTTAGGGTTCAGAAGACCCACCTCTCACTGATAAAGGTCCAGAATTTGTCCCCAAACATGAGCTCATTTATACTATTTTTTTAAATAATTTTTTATTGAACATTTTGATTTCGAACAAAGCCAGAGATCCACCCAACAAAATATGTAAAATAAAATTAAAAACAGTAACTTTGTAATAATAAGTACAAAATCAGGATTGAAACATAAATGATACAGTCTCTCTCATATTTGATCAAATTTGTACAGTTTTTTTTACTGGCTCCATTTAT
Associated Phenotype:
Not determined