ZMP
col15a1b
Ensembl ID:
ZFIN ID:
Description:
collagen alpha-1(XV) chain [Source:RefSeq peptide;Acc:NP_001165841]
Human Orthologue:
COL15A1
Human Description:
collagen, type XV, alpha 1 [Source:HGNC Symbol;Acc:2192]
Mouse Orthologue:
Col15a1
Mouse Description:
collagen, type XV, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88449]
Alleles
There are 7 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa39823 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa30818 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa39824 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa39825 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa11640 | Essential Splice Site | Available for shipment | Available now |
sa12573 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa39823
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000088643 | None | None | 1149 | None | 36 |
ENSDART00000111483 | Nonsense | 10 | 236 | 1 | 2 |
ENSDART00000125548 | None | None | 235 | None | 4 |
ENSDART00000137065 | None | None | 899 | None | 35 |
The following transcripts of ENSDARG00000061848 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 2 (position 23877883)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 2 | 24330612 |
GRCz11 | 2 | 23986263 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTACCTCGTCGGGCTGAGCAGGATGGCACCGCTGACCAGTCTGCTGCTCT[T/A]GAGTCTGGTCAGTCTGTCTGGTCAGATCCAGTGGTTTAGGTTTCTGTGGG
Long Flanking Sequence:
TCAGGATTGATGGATAGAAAGTTTGTTATTTGAACTGTTAGTCATTGTCTAAAATGGCAAACTTTAAAATGAACCACTCCTCTATTATATTAAGATTCTTTTCTTATCTTCCCCAAATCCTCCCAGAGCTGAATCCCAGTGGGACTGAAAATACATATATAAAAATATCTATCAAAGATGCTTTGTCTTTAAGATGCTCCTCATTTGCATCGATTTTTCGTAACTGGTCTTGGTAGTGTGTAGTAGGTGAAGGGCTTTGAGAAGGGGGCCGATCCAGGGGTCAAAGGCTGTCATTCTCCCTCTGTCTGTGCTCAACAATCCCATTATGACGGTGTAGAGGATCGGACATTTGGCTGCCCTGCCGAATACCAAAGCCTGCGTGGTGCACTGGGGTACCGAGGGGCTCTTAGGGGGTTCAGTGAAGAGTTTTGCGTTTCGGCATACGCTCATCTACCTCGTCGGGCTGAGCAGGATGGCACCGCTGACCAGTCTGCTGCTCT[T/A]GAGTCTGGTCAGTCTGTCTGGTCAGATCCAGTGGTTTAGGTTTCTGTGGGTCCCAGAGACAAGTTCACCCGCTCCTGCGGTCAGCACACCTGCAGACACCAGCAGTACTGAAGCAGCAGAGGAAAACACAGAGCACGTCCTGCCAACCTCTCCTCCTGCGCCCACAGCGGCGCCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGGTGAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAAACATTGTGACTTCAGTATATTTCTTTGTTTATTTTTTTTAATTTAAAATAGTTTTAATGTTTTAAAAAAAAAAAAAAAATTAATATTGCTTTTTTTAGTTTGTGTTATTTTAGAAAGAGAGAAACATTTTCTTATTAGCTAATTGAAATATTTTGTGTTGTTTTTATATATTATTTATATGTTTATATATTATTATTATTATATATTTATATATACTAATATATTAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa30818
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000088643 | None | None | 1149 | None | 36 |
ENSDART00000111483 | Essential Splice Site | 84 | 236 | 1 | 2 |
ENSDART00000125548 | None | None | 235 | None | 4 |
ENSDART00000137065 | None | None | 899 | None | 35 |
ENSDART00000088643 | None | None | 1149 | None | 36 |
ENSDART00000111483 | Essential Splice Site | 84 | 236 | 1 | 2 |
ENSDART00000125548 | None | None | 235 | None | 4 |
ENSDART00000137065 | None | None | 899 | None | 35 |
The following transcripts of ENSDARG00000061848 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 2 (position 23878106)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 2 | 24330389 |
GRCz11 | 2 | 23986040 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGG[T/C]GAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAA
Long Flanking Sequence:
CTGGTCTTGGTAGTGTGTAGTAGGTGAAGGGCTTTGAGAAGGGGGCCGATCCAGGGGTCAAAGGCTGTCATTCTCCCTCTGTCTGTGCTCAACAATCCCATTATGACGGTGTAGAGGATCGGACATTTGGCTGCCCTGCCGAATACCAAAGCCTGCGTGGTGCACTGGGGTACCGAGGGGCTCTTAGGGGGTTCAGTGAAGAGTTTTGCGTTTCGGCATACGCTCATCTACCTCGTCGGGCTGAGCAGGATGGCACCGCTGACCAGTCTGCTGCTCTTGAGTCTGGTCAGTCTGTCTGGTCAGATCCAGTGGTTTAGGTTTCTGTGGGTCCCAGAGACAAGTTCACCCGCTCCTGCGGTCAGCACACCTGCAGACACCAGCAGTACTGAAGCAGCAGAGGAAAACACAGAGCACGTCCTGCCAACCTCTCCTCCTGCGCCCACAGCGGCGCCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGG[T/C]GAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAAACATTGTGACTTCAGTATATTTCTTTGTTTATTTTTTTTAATTTAAAATAGTTTTAATGTTTTAAAAAAAAAAAAAAAATTAATATTGCTTTTTTTAGTTTGTGTTATTTTAGAAAGAGAGAAACATTTTCTTATTAGCTAATTGAAATATTTTGTGTTGTTTTTATATATTATTTATATGTTTATATATTATTATTATTATATATTTATATATACTAATATATTATATTATTGTAAAATCAAAAATAAATTATGAATAAACTATTTTCAATATAATGTTTTTTTGCAGTGTGGACGAGCAGTGAGTTTTGGTTTATTGCAAAAAAAAAAATATTTATAGTAAATTAATATAAAGATAAAAGCTAAAATATAGCTTAAATATATGTAATATAATTGTTTTAAAGCTAAAAATCCATATATACATTGCAAAAAATAATTTTCTTTCTAGAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa39824
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000088643 | None | None | 1149 | None | 36 |
ENSDART00000111483 | Essential Splice Site | 84 | 236 | 1 | 2 |
ENSDART00000125548 | None | None | 235 | None | 4 |
ENSDART00000137065 | None | None | 899 | None | 35 |
ENSDART00000088643 | None | None | 1149 | None | 36 |
ENSDART00000111483 | Essential Splice Site | 84 | 236 | 1 | 2 |
ENSDART00000125548 | None | None | 235 | None | 4 |
ENSDART00000137065 | None | None | 899 | None | 35 |
The following transcripts of ENSDARG00000061848 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 2 (position 23878106)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 2 | 24330389 |
GRCz11 | 2 | 23986040 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGG[T/C]GAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAA
Long Flanking Sequence:
CTGGTCTTGGTAGTGTGTAGTAGGTGAAGGGCTTTGAGAAGGGGGCCGATCCAGGGGTCAAAGGCTGTCATTCTCCCTCTGTCTGTGCTCAACAATCCCATTATGACGGTGTAGAGGATCGGACATTTGGCTGCCCTGCCGAATACCAAAGCCTGCGTGGTGCACTGGGGTACCGAGGGGCTCTTAGGGGGTTCAGTGAAGAGTTTTGCGTTTCGGCATACGCTCATCTACCTCGTCGGGCTGAGCAGGATGGCACCGCTGACCAGTCTGCTGCTCTTGAGTCTGGTCAGTCTGTCTGGTCAGATCCAGTGGTTTAGGTTTCTGTGGGTCCCAGAGACAAGTTCACCCGCTCCTGCGGTCAGCACACCTGCAGACACCAGCAGTACTGAAGCAGCAGAGGAAAACACAGAGCACGTCCTGCCAACCTCTCCTCCTGCGCCCACAGCGGCGCCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGG[T/C]GAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAAACATTGTGACTTCAGTATATTTCTTTGTTTATTTTTTTTAATTTAAAATAGTTTTAATGTTTTAAAAAAAAAAAAAAAATTAATATTGCTTTTTTTAGTTTGTGTTATTTTAGAAAGAGAGAAACATTTTCTTATTAGCTAATTGAAATATTTTGTGTTGTTTTTATATATTATTTATATGTTTATATATTATTATTATTATATATTTATATATACTAATATATTATATTATTGTAAAATCAAAAATAAATTATGAATAAACTATTTTCAATATAATGTTTTTTTGCAGTGTGGACGAGCAGTGAGTTTTGGTTTATTGCAAAAAAAAAAATATTTATAGTAAATTAATATAAAGATAAAAGCTAAAATATAGCTTAAATATATGTAATATAATTGTTTTAAAGCTAAAAATCCATATATACATTGCAAAAAATAATTTTCTTTCTAGAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa39825
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000088643 | Nonsense | 323 | 1149 | 6 | 36 |
ENSDART00000111483 | None | None | 236 | None | 2 |
ENSDART00000125548 | None | None | 235 | None | 4 |
ENSDART00000137065 | Nonsense | 2 | 899 | 1 | 35 |
The following transcripts of ENSDARG00000061848 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 2 (position 23898581)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 2 | 24309914 |
GRCz11 | 2 | 23965565 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACCTGGACCCCCTGGGCCTCCAGGAACATCTGTCCCAATCAGACATTCA[G/T]GACAGCCTGGACCGAGAGGACCACAGGGTCCAATTGGTCAGCCAGGAGGA
Long Flanking Sequence:
ACTAAGACCCACCTCTCCTGTTGAAGCCCCACCCATTCAGTCACCTGACATAGAAGAGGGTGGATTCTCAGGACATGTGACCCCAATAGATGAAAGGCTGCTGAGAGGTCAGAGCATACTATTTAAATCAAATTTGGAATATATAGATCTGATTATTACGTGTATTATAGTAAGATTATTAATAATATATGTGTATATTGGTGGTTTTGTTAAAAATTGGTTGTTATTCCTTTTAGGGACTTACAAAACAGATGAAACAGGGGAGAGGGTTGTGAGTGACAAACTTTATTTTTGGCTGTAACTGGAAAAAGGATGCAATTAATATAGTATCCACGTTGATATACTACTGTACTAAATACTAAAATACTAAAAGTCTGGTTTAAGGGCATTTTTTTCTGGGTTTTGACTAGGGACAGAAAGGGGAGCGTGGAGAACCTGGGCCTGCAGGGCCACCTGGACCCCCTGGGCCTCCAGGAACATCTGTCCCAATCAGACATTCA[G/T]GACAGCCTGGACCGAGAGGACCACAGGGTCCAATTGGTCAGCCAGGAGGACGAGGCAGACCAGGGAAAGATGGACAACCTGTATGAGTATATGTTTATTAGGATGTGATGTTTAGAATATGCTCTGATGACAATTTTCTTACTTGTTTTAATGACTTATACGCTTTATTTTTTTAACTATTGCATGTTTTACAGGGAAGCAAAGGTGAAGATGGGAAACCAGTGAGTATTCATTTTTTGTTGAGATATGAACTCAAGATATAAGAGCTCAAAATAAGGACAAAAAAACACTTAAAATTGACCCATTAATCCAGAACTTTGAGATGGCCAGATGACTTAAAATGTTATATAATAAAGTCTTTAATGGCCTCTGTGGTTCCACAATGGACTTTTAATATACATGGAACCTTTCCATTTCACAAAAGATTCATTGAAAAGCTTCTAATTACGAAAATGTTCTGCACACTAAGAAAAAAAAAATATTTGTGTGTATATATACAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa11640
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000088643 | Essential Splice Site | 429 | 1149 | 10 | 36 |
ENSDART00000111483 | None | None | 236 | None | 2 |
ENSDART00000125548 | None | None | 235 | None | 4 |
ENSDART00000137065 | Essential Splice Site | 108 | 899 | 5 | 35 |
The following transcripts of ENSDARG00000061848 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 2 (position 23902855)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 2 | 24305640 |
GRCz11 | 2 | 23961291 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACTGGGCTCTGGATTTGGAKATGCTGACATTGATACAGAACTTCTTCGGG[T/C]GAGTAAAATCARTTTTTGAAGACATGGNTTAAGCTATTTCAGTAAGACTT
Long Flanking Sequence:
AGCTGACCAAGCTGGGGCTCGAACTAGCAACCTTCTTGCTGTGAGACATTCATGCTACCGACTACACCACCGTGACACCCTATCTTTTAGATATCTTAGATATTAGATATATTATTTTGTGTTTAAAAGAACAAAGAAACTCAAACAGGTTTGTAACCTCTTGAGGTTGAGTGTGAGTTTGTAGTAAGTAAATTATCATTTTTGCCTGAACTATCACTTTAAACCTTCCTGACACAACATACTGACACATCAAAAAGCACTCTAGAGAGGCCTTATAGTCATCATTTAGGACGATGATTTTGAACCTTTAAAATATATTTGCTGCATTAGTATTTGAAACTTGTTTAGGCGGCTGTACATCTGGTGTAGACTGATGTAGAACTCTTCATACTGTGCATACTTAATACTTAAAATGTATATTCATTTTTAATGACAGTATGGATTTGATGCACTGGGCTCTGGATTTGGAGATGCTGACATTGATACAGAACTTCTTCGGG[T/C]GAGTAAAATCAGTTTTTGAAGACATGGTTTAAGCTATTTCAGTAAGACTTATCAGCAGATATATCAATCTCTCTGACCGATAAGATGATATTCTAGGGTCCACCTGGTCCTCCAGGGCCTCCTGGGATACCCGGCCCTCCTGGTCCTAATAGCCCACTTGGAGGATTGCTCCCTGGTCCTCCAGGGGCTCCTGGCAAAGATGGCAGAGATGGGCAGAGTGGGCTCCCTGTGAGTACTGTATGCTTTCTTTTCAATTTAATCAGTTAATGGAGAAAGATTCTGGTTAGGTGTTGAGAAAGATTGATTTTCCACTTGTCTACTCTGTACTTCTGAAGACACTCAGACAACTTAAAAATTCATTCAGACAACTTCACATTAGATCAATGTAGATTAAGAAGTAACTCACTGATAAATTATTAACTCACTCAAGCAATACCCGAGACCTCCTACTGATGCTAAATGATGGTTGTAGCACAGTGCTCAGCTGATTCATGTTGTCT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa12573
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000088643 | Nonsense | 802 | 1149 | 28 | 36 |
ENSDART00000111483 | None | None | 236 | None | 2 |
ENSDART00000125548 | None | None | 235 | None | 4 |
ENSDART00000137065 | Nonsense | 477 | 899 | 23 | 35 |
The following transcripts of ENSDARG00000061848 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 2 (position 23915308)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 2 | 24293187 |
GRCz11 | 2 | 23948838 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TAATTATTTATAATGACTCATCTATTTTAAAGGGTCCACCAGGTCCACCT[G/T]GACCTCCAGGGCCACCAGGWCGAGTGATTGGCCTCAATGGAGTAAGTTTK
Long Flanking Sequence:
TTCTTTTTATGTGTATTTGTGTTGTGTATGTGTACTGGTTTTGGTAATTTACAAGGTTATTTTTTTAAGTTGTATTCTAGTGGTTTACAAGGACATACCTGATATCCTTGTAATTCAAAACACTAAAAATCAAACCTAATGGGGTCTTTTCCTATTCAAATATTGCCACAGGTTTCCTGTGAGGGTTGGGTTTAGGGTTAGGGGTGAAGTAGAATAATATAGTAAGTGTTTTTTACTGTATACATTACACCTATGGAGTACCCGTGTTAATTTGTAGTTTTTAATCTCATAAATGCTTATTTCCTTAAAGGGTCGACCTGGAATAGCTGGAAGGAAAGGGGACAAGGGAGATGCAAGTGGTCCCTCTGTAAGTTTTTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTTTGTGAGTGTTCATTTTGTTTCATATCTTACAAACTAATTATTTATAATGACTCATCTATTTTAAAGGGTCCACCAGGTCCACCT[G/T]GACCTCCAGGGCCACCAGGACGAGTGATTGGCCTCAATGGAGTAAGTTTTAACCTTTTAGCACATTTGATGTGCGCTGAAAATGAGCATCAAATTGTGGGTTATCCTAACATGTGCAGTTTTCTCATGAAAGTCATGAAATGATTGTGCTCTGAATCTTAAAGACAGTTTTCCCAGTTCCTCCTAGACCACACTGCAAAACGCCAGTAAGTTAATAATTGAGGGGTTTGGCTTTGGGTATGGCGCATGTCATTCTGGCTTGGCTCCTCCCCTCATACACTAGCCCTGCCTACTTCACTGTCTAAGGTGCTTTGGATTATTTCTGGGCTGGCTCAAGGTCTAAAAAACAGCATAGAGCAAGCTTAATTTACAAAACAGATCAATATATTTAAAAGGGACAGCACACACAAAAATTATAATTCACTGAGAGTTTAAAAACAACACATACAGGCTTAGCAAAATGGCTTCTGAAGACACATTGAGGACTTAAAAAGCAAAACA
Associated Phenotype:
Not determined