Busch Lab

ZMP

col15a1b

Ensembl ID:
ENSDARG00000061848
ZFIN ID:
ZDB-GENE-070912-689
Description:
collagen alpha-1(XV) chain [Source:RefSeq peptide;Acc:NP_001165841]
Human Orthologue:
COL15A1
Human Description:
collagen, type XV, alpha 1 [Source:HGNC Symbol;Acc:2192]
Mouse Orthologue:
Col15a1
Mouse Description:
collagen, type XV, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88449]

Alleles

There are 7 alleles of this gene:

Allele Name Consequence Status Availability
sa11640 Essential Splice Site Available for shipment Available now
sa12573 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa11640
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000088643 Essential Splice Site 429 1149 10 36
ENSDART00000111483 None None 236 None 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 Essential Splice Site 108 899 5 35

The following transcripts of ENSDARG00000061848 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 23902855)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 24305640
GRCz11 2 23961291
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACTGGGCTCTGGATTTGGAKATGCTGACATTGATACAGAACTTCTTCGGG[T/C]GAGTAAAATCARTTTTTGAAGACATGGNTTAAGCTATTTCAGTAAGACTT
Long Flanking Sequence:
AGCTGACCAAGCTGGGGCTCGAACTAGCAACCTTCTTGCTGTGAGACATTCATGCTACCGACTACACCACCGTGACACCCTATCTTTTAGATATCTTAGATATTAGATATATTATTTTGTGTTTAAAAGAACAAAGAAACTCAAACAGGTTTGTAACCTCTTGAGGTTGAGTGTGAGTTTGTAGTAAGTAAATTATCATTTTTGCCTGAACTATCACTTTAAACCTTCCTGACACAACATACTGACACATCAAAAAGCACTCTAGAGAGGCCTTATAGTCATCATTTAGGACGATGATTTTGAACCTTTAAAATATATTTGCTGCATTAGTATTTGAAACTTGTTTAGGCGGCTGTACATCTGGTGTAGACTGATGTAGAACTCTTCATACTGTGCATACTTAATACTTAAAATGTATATTCATTTTTAATGACAGTATGGATTTGATGCACTGGGCTCTGGATTTGGAGATGCTGACATTGATACAGAACTTCTTCGGG[T/C]GAGTAAAATCAGTTTTTGAAGACATGGTTTAAGCTATTTCAGTAAGACTTATCAGCAGATATATCAATCTCTCTGACCGATAAGATGATATTCTAGGGTCCACCTGGTCCTCCAGGGCCTCCTGGGATACCCGGCCCTCCTGGTCCTAATAGCCCACTTGGAGGATTGCTCCCTGGTCCTCCAGGGGCTCCTGGCAAAGATGGCAGAGATGGGCAGAGTGGGCTCCCTGTGAGTACTGTATGCTTTCTTTTCAATTTAATCAGTTAATGGAGAAAGATTCTGGTTAGGTGTTGAGAAAGATTGATTTTCCACTTGTCTACTCTGTACTTCTGAAGACACTCAGACAACTTAAAAATTCATTCAGACAACTTCACATTAGATCAATGTAGATTAAGAAGTAACTCACTGATAAATTATTAACTCACTCAAGCAATACCCGAGACCTCCTACTGATGCTAAATGATGGTTGTAGCACAGTGCTCAGCTGATTCATGTTGTCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12573
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000088643 Nonsense 802 1149 28 36
ENSDART00000111483 None None 236 None 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 Nonsense 477 899 23 35

The following transcripts of ENSDARG00000061848 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 23915308)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 24293187
GRCz11 2 23948838
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TAATTATTTATAATGACTCATCTATTTTAAAGGGTCCACCAGGTCCACCT[G/T]GACCTCCAGGGCCACCAGGWCGAGTGATTGGCCTCAATGGAGTAAGTTTK
Long Flanking Sequence:
TTCTTTTTATGTGTATTTGTGTTGTGTATGTGTACTGGTTTTGGTAATTTACAAGGTTATTTTTTTAAGTTGTATTCTAGTGGTTTACAAGGACATACCTGATATCCTTGTAATTCAAAACACTAAAAATCAAACCTAATGGGGTCTTTTCCTATTCAAATATTGCCACAGGTTTCCTGTGAGGGTTGGGTTTAGGGTTAGGGGTGAAGTAGAATAATATAGTAAGTGTTTTTTACTGTATACATTACACCTATGGAGTACCCGTGTTAATTTGTAGTTTTTAATCTCATAAATGCTTATTTCCTTAAAGGGTCGACCTGGAATAGCTGGAAGGAAAGGGGACAAGGGAGATGCAAGTGGTCCCTCTGTAAGTTTTTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTTTGTGAGTGTTCATTTTGTTTCATATCTTACAAACTAATTATTTATAATGACTCATCTATTTTAAAGGGTCCACCAGGTCCACCT[G/T]GACCTCCAGGGCCACCAGGACGAGTGATTGGCCTCAATGGAGTAAGTTTTAACCTTTTAGCACATTTGATGTGCGCTGAAAATGAGCATCAAATTGTGGGTTATCCTAACATGTGCAGTTTTCTCATGAAAGTCATGAAATGATTGTGCTCTGAATCTTAAAGACAGTTTTCCCAGTTCCTCCTAGACCACACTGCAAAACGCCAGTAAGTTAATAATTGAGGGGTTTGGCTTTGGGTATGGCGCATGTCATTCTGGCTTGGCTCCTCCCCTCATACACTAGCCCTGCCTACTTCACTGTCTAAGGTGCTTTGGATTATTTCTGGGCTGGCTCAAGGTCTAAAAAACAGCATAGAGCAAGCTTAATTTACAAAACAGATCAATATATTTAAAAGGGACAGCACACACAAAAATTATAATTCACTGAGAGTTTAAAAACAACACATACAGGCTTAGCAAAATGGCTTCTGAAGACACATTGAGGACTTAAAAAGCAAAACA
Associated Phenotype:
Not determined