ZMP
capn9
Ensembl ID:
ZFIN ID:
Description:
calpain-9 [Source:RefSeq peptide;Acc:NP_001003501]
Human Orthologue:
CAPN9
Human Description:
calpain 9 [Source:HGNC Symbol;Acc:1486]
Mouse Orthologue:
Capn9
Mouse Description:
calpain 9 Gene [Source:MGI Symbol;Acc:MGI:1920897]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa25682 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa39702 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa25682
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000007732 | Essential Splice Site | 505 | 688 | 13 | 20 |
Genomic Location (Zv9):
Chromosome 1 (position 54457788)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 53231291 |
| GRCz11 | 1 | 53891034 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAAACTGCTCCTAAAGTTACCTGTATGTATGTTTGTGTCTACTTTTTGAA[G/A]CCACCGAAACCAAACCCACCTGAAGAGGAGACTGATGAGGAGAAAGGCCT
Long Flanking Sequence:
TTGTGCATCCCTATTGTAATTATACTATATTAATTATACTTTATGTTGTGAGTATATTTTTTGTGATGCACAGGGATAAATCCGATTTTGGAATATCTTTGGTTCGTTAATTTTTTATTAGAATTTGTTTAGCTAGCTTCATGCATCAAGCCACCAGTCATTATACACAAATTTATAAATGCATTTATGAATTAATTTCCTTACTCAATTGCTTGTACCCCATTATATATCTATAGTGAACTACAAAATAAAATTTCCATTAGATTTTATTTGCTTTGAACAACTGAACCCAATCATGAACTGATTCTTCATTGCTATGTTTTTCAGTGAGGTGGGAAACAAAATTGAAGCTGATCTGCCAGAGGTGAGTCAAATATAATCACTGGATAATTTTATTATATCCCTAGGAAGGACATATCAAAGTCAAAAGCAGATTGCTCTTAAATAGGTAAAACTGCTCCTAAAGTTACCTGTATGTATGTTTGTGTCTACTTTTTGAA[G/A]CCACCGAAACCAAACCCACCTGAAGAGGAGACTGATGAGGAGAAAGGCCTGAGGAAACTCTTTGAACAGGTCGCTGGACCGGTAAGAAAACTACAGTCTACTGTCTAAAGGGAATAGGGTATATGCCGAGCTAGTGCAGTTCCCATGCTGATACACTTCCGGTGACCTGTTATTGTGAACTTTTTACCATTTTTACGGTTCATTATACAGCATCGATGTTGTAATGTCATTAAAATACATTCAGTTAAATAAACTTAAGCATTTATTTTTATTTGCTCAAGCGTAAAACAAGACAAAAAGCTGTTTACTCGCACACGCTTGTCAGAATCGGCAGGCTAACACAGAAGCTCCATTGAATATACTGGGGTAAAATAAATGCTCATATTATAAAGATATGGCGGGGGAAATGTAATTTAATGCAGTGCTTCTTGTACAATCTGAGACCCACTTTAAATCGGATTTCACTCAGCTAGTGGAGATCGCTGATTTTTAAAGAAAAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa39702
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000007732 | Nonsense | 583 | 688 | 16 | 20 |
Genomic Location (Zv9):
Chromosome 1 (position 54454471)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 53227974 |
| GRCz11 | 1 | 53887717 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTTCCTGAACTGAGTATAGGTGGATGGATCAGGAATGATGGAATTTTCC[G/T]AGTTCAAAGTCTTCTGGGATAAACTCAAGAAGTGGATCGTAAGTTACAGG
Long Flanking Sequence:
TATTTTCTCTTTTTCGGACCATTCTCTGTAAACCCTAGAGATGGCTGTGCATGAAAATCCCAGTAGATCAGCAGATTTTGAAATACTAACACCAACAACCGTGCCACATTCAAAGTCACTTCAATCACCTTTCTTCCCCATTCTGATGCTTGGTTTAAACTACAGCAGATCATCTTGACCGTGTCTACATGCCTAAATGCATTGAGCTGCTGTCATGCGATTGGCTAATCAGAAATTTGCTTTAACGAGCAGTTGGACAAGTGTACCTAATAAAGTGGCCGGTAAGTTTGATTACAAATGACATGTTTTCATGTTGACTATTGATAGGTATAAATGCAGAAAACTTGAGTTATTAGTTCTTGCAAATAAAATCTTCAGATAAACTTATCTTATAGGCTACATGCTATTCTACAAGTGATAGCTCTGAATATATTCTGTAATGTGGCCGAGTTTTCCTGAACTGAGTATAGGTGGATGGATCAGGAATGATGGAATTTTCC[G/T]AGTTCAAAGTCTTCTGGGATAAACTCAAGAAGTGGATCGTAAGTTACAGGATCATATATTTACTTGTCAGTTGTCGGTTTACAATGAATAACCTGCATCGTTACACAAATCAACGTTGTTTTTTGTTGCAGATGCTGTTTCTGTCTTATGATGTGGATCGTTCTGGAACCATGTCTTCCTATGAGCTCCGCAGCGCTCTTAATGCTGCAGGTAAACACACTTATAATGGATTATAAGCATATATAAATATTTATTAACAGTATTTTATCTAATCAAATCTTGAGTGGTCACTTAAAAAGTGATTATTTACTTATTACACAATTAAAATTGTATTCAAATTACTTTTTTAAATGATTTCTAAATAAGGATTTTAATGAATTAACCCAATACTAACTTAAATCCATGTAAATGTCAATGCATAGACAGTTCCAATTAAACTCTTTTAATACTTTAAATTTAAATGCCCTTAGCTTTATTAAAAATGTAATAGTTAAGAAAAG
Associated Phenotype:
Not determined