Busch Lab

ZMP

cops5

Ensembl ID:
ENSDARG00000057624
ZFIN ID:
ZDB-GENE-040426-1686
Description:
COP9 signalosome complex subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6PC30]
Human Orthologue:
COPS5
Human Description:
COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) [Source:HGNC Symbol;Acc:2240]
Mouse Orthologue:
Cops5
Mouse Description:
COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) Gene [Source:MGI Symb

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa44139 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa8923 Nonsense Mutation detected in F1 DNA Not yet available
sa39450 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa44139
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080332 Essential Splice Site 168 334 4 8
Genomic Location (Zv9):
Chromosome 24 (position 24327616)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 23574494
GRCz11 24 23719668
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATTTGACTGAACTCTTTTGCTAATTTCAGTCCTTGTAATTTTTCATCCTC[A/T]GATCGATCCCACAAGGACTATATCCGCAGGGAAGGTCAATCTTGGAGCTT
Long Flanking Sequence:
GGATGGTACCACAGTCATCCAGGATACGGCTGCTGGCTTTCAGGCATAGATGTCAGCACTCAGATGCTTAACCAGCAGTTTCAAGAGCCCTTTGTCGCAGTAGTGGTAAGCGCTGTTGGAAATGTTAAACTTGTTGCATATTTTGCTGATTTCCCTCTTTAAAGCGGGTTACCATCCATCTCAAAAGACACAAGGGGAAAACAGCTCCGCTATGAAATAGTTAAAAGTATCGGTTTAAATTCAGCTTTATCAGTGATCCATAATTGACCCTCAAGACACAAATGAGTTGATGACATTTGTACTGCTGTCTGATTAATGACTGTTGCCTTTGTAACAGAATACATTATACAGTTTATCCTTCATTGCTTATGTAGTGCCGAGGGCAAATAGCAAGCTGGCGTTCATAACTTTCACTCGCAAAACTGGCAGCTTACTGTTTTTATTTGTTATATTTGACTGAACTCTTTTGCTAATTTCAGTCCTTGTAATTTTTCATCCTC[A/T]GATCGATCCCACAAGGACTATATCCGCAGGGAAGGTCAATCTTGGAGCTTTCAGGACATATCCGAAGGTAGCAACTATTTTTAGGCAACTGTATCTAATTTATATGCGTTTTATAAGATGTTGAATCACATTCAAATGTTTAAAAATAGGGTTACAAGCCTCCAGATGAGGGTCCTTCTGAATACCAGACGATACCTCTTAACAAAATTGAGGATTTTGGAGTGCATTGCAAACAGTAAGTGTGCATGACATATTGAATATATTTCCTTTTTTTTAGCCTTTTTATGCACTTGTTATATTTTGAAAATATATTGACTTGCAGTTAACGATAAGCTGTTGTTTGTTTTTAGGTATTATGCATTAGAAGTGTCTTATTTTAAGTCTTCCCTGGACCGCAAACTCCTAGAGCTGCTGTGGAATAAGTATTGGGTCAACACTTTGAGCTCCTCAAGCCTACTGACAGTAAGCACACACTTTTATTGGTGTAAAATTAATATATA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa8923
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080332 Nonsense 202 334 5 8
Genomic Location (Zv9):
Chromosome 24 (position 24327802)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 23574680
GRCz11 24 23719854
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATGTTTAAAAATAGGGTTACAAGCCTCCAGATGAGGGTCCTTCTGAATAC[C/T]AGACGATACCTCTTAACAAAATTGAGGATTTTGGAGTGCATTGCAAACAG
Long Flanking Sequence:
GACACAAGGGGAAAACAGCTCCGCTATGAAATAGTTAAAAGTATCGGTTTAAATTCAGCTTTATCAGTGATCCATAATTGACCCTCAAGACACAAATGAGTTGATGACATTTGTACTGCTGTCTGATTAATGACTGTTGCCTTTGTAACAGAATACATTATACAGTTTATCCTTCATTGCTTATGTAGTGCCGAGGGCAAATAGCAAGCTGGCGTTCATAACTTTCACTCGCAAAACTGGCAGCTTACTGTTTTTATTTGTTATATTTGACTGAACTCTTTTGCTAATTTCAGTCCTTGTAATTTTTCATCCTCAGATCGATCCCACAAGGACTATATCCGCAGGGAAGGTCAATCTTGGAGCTTTCAGGACATATCCGAAGGTAGCAACTATTTTTAGGCAACTGTATCTAATTTATATGCGTTTTATAAGATGTTGAATCACATTCAAATGTTTAAAAATAGGGTTACAAGCCTCCAGATGAGGGTCCTTCTGAATAC[C/T]AGACGATACCTCTTAACAAAATTGAGGATTTTGGAGTGCATTGCAAACAGTAAGTGTGCATGACATATTGAATATATTTCCTTTTTTTTAGCCTTTTTATGCACTTGTTATATTTTGAAAATATATTGACTTGCAGTTAACGATAAGCTGTTGTTTGTTTTTAGGTATTATGCATTAGAAGTGTCTTATTTTAAGTCTTCCCTGGACCGCAAACTCCTAGAGCTGCTGTGGAATAAGTATTGGGTCAACACTTTGAGCTCCTCAAGCCTACTGACAGTAAGCACACACTTTTATTGGTGTAAAATTAATATATATTACATTTAGATATGTGCCAACATCATCTGTCATGTTGGATTACTTAATATAAACGGCATAAATTTAAGTCTAGCCTTTTTTTTTTTTTGCTTGGAATTTGTTCTTAAATCAAAAAATGGCCTGAACCACTGTAAATTGTTACAAAAATATAAATACAAAAAATCCAAAATCTGAATTTCTGACCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa39450
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080332 Nonsense 263 334 7 8
Genomic Location (Zv9):
Chromosome 24 (position 24331929)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 23578807
GRCz11 24 23723981
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAGGTCTGGTCTAATGGTTGTTTCTCCAGAATGCAGACTACACCACCGGA[C/T]AGGTGTTTGACTTGTCTGAGAAGCTGGAGCAGGCGGAAGCGCAGCTGGGA
Long Flanking Sequence:
GGCAAGTTTTGTAATGTAGAAACCTTCAGAAATCTAAATAGTAGTGTGCAGTTTGGTGTATGTAAGTGTTCCTAAAAAAATATAGGGTTTTGCACAATGCATTCATGTTCGCCCAACACAAATTAAGTTAGTTTGTTTTTACACATTTAAGTGGATTGAACATAAAACAATTAAGTAGTTTTAAATAAGTAGTTAGAATATATTCAGCAAAAATCCTTTGAGTGTGTTGCTGAAGTGGAGATTTATGGCTCAGTGCCAGAGAACAACTCATTTTGAAAAGAGGACTTCAAAACAAAAATTGGCAAAATGTCGTAAAAGAAACACTTAAAGTTGTATTTTTGTTTTTTTGTTTTTTCATTCCATTAGAAGTAAAACAACACACTTTATGAAATGTCAAAAGCCAAATTCTTAAAATTGACAGGTGACTGAAAAAGCAGTGTTTTTGCTTACAAGGTCTGGTCTAATGGTTGTTTCTCCAGAATGCAGACTACACCACCGGA[C/T]AGGTGTTTGACTTGTCTGAGAAGCTGGAGCAGGCGGAAGCGCAGCTGGGACGAGGCAGCTTCATGCTGGGCTTGGACACACATGATAGAAAATCTGAGGACAAACTAGCAAAGGCAACACGTGACAGGTAACACCATACTTGTTAATTCAGTTTTAAATTCCAAAGGGAAAACACTTTAGATCGTCTTTTTTGTTTCCATATATACAGTTAAATTCAGAATTATTAGCCCCACTTTGTTTTTTGTTTTTTTGTAGTTTTTTTTTTATATATTTCCCAAATTATGTTTAACAGAGCCAGGAAATTTTCACAGTATGTCTGATAATATGTTTTTCTCATGGAGAAAATCTATTAATTAATCGGCTAGAATAAAAGCAGTTTTTTATTTTTTAAAACCTATTTTAAGGTCAATATTATTAGCCCCTTTAAGTTATATTTTTTCAATAGTCTACGGAACAAACCATCAATATCAATAATCAATATCAATAATCAACCAAAATAT
Associated Phenotype:
Not determined