ZMP

si:ch211-245h14.3

Ensembl ID:

ENSDARG00000004574

ZFIN ID:

ZDB-GENE-041014-349

Description:

general transcription factor 3C polypeptide 2 [Source:RefSeq peptide;Acc:NP_001038483]

Human Orthologue:

GTF3C2

Human Description:

general transcription factor IIIC, polypeptide 2, beta 110kDa [Source:HGNC Symbol;Acc:4665]

Mouse Orthologue:

Gtf3c2

Mouse Description:

general transcription factor IIIC, polypeptide 2, beta Gene [Source:MGI Symbol;Acc:MGI:1919002]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa13164	Nonsense	Available for shipment	Available now
sa39298	Essential Splice Site	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa13164

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
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Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000020969	Nonsense	349	853	8	19
ENSDART00000101262	Nonsense	348	830	8	18
ENSDART00000145254	None	None	138	None	2

Genomic Location (Zv9):

Chromosome 20 (position 38577790)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	20	38650202
GRCz11	20	38553081

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

CTGTTCGGRCCATGGAATGGTGCCCGTGTCCAGAYGGGGCWGAGAAAAAA[C/T]AATATGCTGCCATCTACTGCCATAAAGGCATGGACGACACACACCAAATC

Long Flanking Sequence:

TGATAATCGTTTTGAATAACCGTTATTACAGTTATTACCAAAATAATCGTGATTATGATTTTTTTCCTAAAATCGAGAAGCCCTAATATGAGATAAACAACATCAGTACATAATAACTGTTGATTATTTATTAATAAACCGATACTAAATTGTCCCATCTGCATCACAGTGCATCGAGGAAACAATTAATTTTGACATTATCTTTTGTATCGTTTCCAATCCCCCAAAAACTTGCTGCTACCATAAATATGCTTTCACTTGATCCTTCTGAAATCCTTCCAATATATTTTCGTGCTCAAAAATATTTCTTCTTCTTCTCCTCATTATTATGAATGTAGAAATAGTTTGTGCTACTGTATTGATTCTCCTTCAAATATTTACTGATCTGCAGGTTTGAGTCATTGCCACATCATCCTGAGCGATGGGACTCTCTGTTCTTTGTGGGAGGTCCTGTTCGGGCCATGGAATGGTGCCCGTGTCCAGACGGGGCTGAGAAAAAA[C/T]AATATGCTGCCATCTACTGCCATAAAGGCATGGACGACACACACCAAATCACCAAGCTGTACTCGGGTCCTGCCTTACTGCAGCTGTGGGACCTAGGAGACCTCCAGTGCAAAGAAAGGTGACCTCAATGTGATTTTACTTTCAAACTAAATGTTTGTGCTGTGTTGGGCTTTAGAATAATTTTTTTTTTTCTTGTCGCTTTAGGCCCTCAACTACTCCTCATCTAGCATATGCTCTGGCGATAGATGACGGATACATCTGGAATATCAAGTGGTGTCCTGCTGGAGCATGGGAACTGCCTTCTACCAGCAGAAAGGTATTAGACATTGGACAGAAATGCCATTAGACAAATACATAAAGTATCCCAAATAATTAATTGGTAAAAAATTTGTCTGGATCAAGAATATATTCAGATAATCCACCTTTATAACAATGGGTCTGCTATATTTTAAATTATGAGTTACACTTGTTTGGGGAACTTTCATTCAAAGAAACAGAAT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa39298

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > T

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000020969	Essential Splice Site	649	853	16	19
ENSDART00000101262	Essential Splice Site	626	830	15	18
ENSDART00000145254	None	None	138	None	2

Genomic Location (Zv9):

Chromosome 20 (position 38598562)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	20	38670974
GRCz11	20	38573853

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TGAAAGATTAATGATGAATCCATAATAATGACAAAGCTATTCTCTTTTTC[A/T]GAGCCTTTCTATGTCCGATTGGATAAATGCATTTGCCATTGTGGATAATG

Long Flanking Sequence:

TACTAGTAAGGTATACTTAATAAAGTGGCCAGTGAGTGCATGCACTGTATGCATTTGTCATCATAACCATAGCCTTCTCTCTCTTTCTATATTTCTTACACACAAACACAAGCATGCTCACTCTGCATCATTTCCATCAACGTGTTTAAATAGTCATCGACCAAGACAACTATTATGACATTATGGCATTTATTTTCAACCAATTAGTTTCATTTTCAAATATGACAAGCAGGCTGTAGGGGTCTCAACTGTAGTTTCTCTGTTTCTCTAAGTACTTCCTTTATATAAATTACAGAGATCAATAGTTCTAGAAAGTAAACAACAAAAAAATTATTAATTAAGATGTGTAAATTTGTGTATATTTTCTGAGCAAAACAATAAAATCAGTCATTTTAGTTGCAAAAATCATAATATGTTTGTTTTATGAAAACCTTTAGGGACTGATAAGAGTGAAAGATTAATGATGAATCCATAATAATGACAAAGCTATTCTCTTTTTC[A/T]GAGCCTTTCTATGTCCGATTGGATAAATGCATTTGCCATTGTGGATAATGGAGGAGACTGTTTATTTAGTTGTCTTCCTGAAATGGACATGGACCCCAGTAATCTCCGACGACGGAGATTTGTATGTTTATCATCATCATCATTATTTAGTTTCCCACATGTTAAATGAGAGCCTTAAGTTGACATGTTGCTCAATGCTTACAGTCCGTGTACAGGACTGACATGGTCCAGTTTGAAGCTGGTCAGAGGACAGCAGGTGAGGAACAGGCGGAGGAAGAAACTGAAGACAAGACCAGTATTCCTGGAAGAGAGCCATTGACCTACAGAGGAGCAGTCAAAAAAAACTTTCTCCACTTTCATGACTTGGACATGGTAAGAGAAACACAATTCATGAATAGATGATGTTTTGTGCAGTCATTGTTTAATGTCATCGTCATCATCTGGCAGTTGAACAGATTTTTTTATTAATGTGGTCTTGGGGCCTGAGAAATGATGTAGGT

Associated Phenotype:

Not determined