ZMP

si:dkey-18f22.3

Ensembl ID:

ENSDARG00000062720

ZFIN ID:

ZDB-GENE-091116-32

Human Orthologue:

PCDH1

Human Description:

protocadherin 1 [Source:HGNC Symbol;Acc:8655]

Mouse Orthologue:

Pcdh1

Mouse Description:

protocadherin 1 Gene [Source:MGI Symbol;Acc:MGI:104692]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa15672	Nonsense	Available for shipment	Available now
sa38793	Nonsense	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa15672

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
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Mutation:

A > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000091004	Nonsense	214	1190	1	4
ENSDART00000139733	Nonsense	214	1190	2	5

The following transcripts of ENSDARG00000062720 do not overlap with this mutation:

ENSDART00000134692

Genomic Location (Zv9):

Chromosome 10 (position 21127382)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	10	21088796
GRCz11	10	21046177

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

TGTTGGGAAGCCTTGATCGAGAGCTGAAAGACTCATACGACCTCACCATC[A/T]AAGCTGTGGATGGAGGAAATCCACCTCGCTATAGCAGTGCCTTGCTGAGG

Long Flanking Sequence:

GCCTACCAGACACTGGACACCTGTACAAACTGGAGGTGGGCGCTCCCTATCTGCGGGTGGATGGCAAAACTGGAGATATCTTTACCACCGAGATCCCCATAGACAGAGAGACACTGAAGGATTGTCGTAATAAAGGCAAACCCTGCTTTCTGGAGTTTGAGGTGTCCGTCACAGACCTTATTCAAAATCAGAGTCCACGGCTGATAGAGGGAAGGATCGAAGTACAGGATATCAACGATAACACACCACAGTTCCCCTCACCTGTCCTTACTCTCTCAGTTCCAGAGAACACCCACATGGGGGCACTCTTCTCAATTCCACTGGCCACTGATAAAGATACAGAGAGGAATGGAGTAGCTGACTACACCTTAACAGCAGGACCAGAGGCTGTAGCACTCTTTGGTCTGCAAGTTGCAGAGGATCGAGGTGAAAAATTACCTCAACTCATAGTGTTGGGAAGCCTTGATCGAGAGCTGAAAGACTCATACGACCTCACCATC[A/T]AAGCTGTGGATGGAGGAAATCCACCTCGCTATAGCAGTGCCTTGCTGAGGGTTGTCATAGCTGATGCCAACGACAATGCACCAAAATTTGAAAAATCCTCCTATGAAGCAGAGGTTGCAGAGAACAGCCCGATTGGACACTCTGTGTTACAGGTAAAACGGAAAACATGCTAAGTCAACCTTTAGATCTGAACAAGGCAAGATAAATTGTCAATTGCATCATGTTGGAGTGTGAAATTTTAATGAGCGCTGCTGTCCCAACCTCCCAGCTGTCTGTTTTTCACTTTGATGCCTTACATCAGTGTAGCAGGGGCTGACTTACCAAATTCACTTACAATAATTATTAGAATAATCCAGTTTGATCATAACAAACACAATTATTCAAAAGAAAAAAGTAGATACATTACTATACGTCTATTAAAGATAAATTTGAAAGAGTTAGATTGCTGAAATGATATAAATAGGGTGTAAAATTTGTTTTAAAGGAACCCCACACTCTAT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa38793

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000091004	Nonsense	928	1190	2	4
ENSDART00000139733	Nonsense	928	1190	3	5

The following transcripts of ENSDARG00000062720 do not overlap with this mutation:

ENSDART00000134692

Genomic Location (Zv9):

Chromosome 10 (position 21124663)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	10	21086077
GRCz11	10	21043458

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CATTTGCCTCTGACATATCCGCCTGGAAGCCCTGACCTGGGCAGGCACTA[T/A]CGTTCCAATTCCCCATTGCCCTCCATCCAGCTCCAGGCCCAGTCCCCATC

Long Flanking Sequence:

AAACCATCCCGCCATGCCATTGCCTTGGTACACATTTATGTTAATGAAACTATTGCCAATGTAAGTCATGTGGAGGCACTTGTGGGGCATAGTTTGTACACCCCACTCGACATGGACATTGCAGGAGACCCAGATTATGGTTTGGCTGCCCAAAGAAGTAACATTGTGTATGGCAGTTTAGCTGGAGTGGCAGGAGTCGTCACCGTGATCGTTGTTGTGGTCTTCATCAGACATCGCCTTCAAAGAGAAACTAAGAGTGGTTATCAGGCTGGCAAGAAGGAGACCAAAGATCTGTATGCCCCCAAGCAAGGGCCAAAAAGTGGCAAGGGGAGAAAAGGTAAAAAAGGGAAGCCACCAAAGTCACCTAAACCTCTTGGAGAGGATGAAGAAGTCAGCCTTCAAAAGAGTCTGAAATTTAACCTTGATGGGGTTAATGACAGCCCCAGGATCCATTTGCCTCTGACATATCCGCCTGGAAGCCCTGACCTGGGCAGGCACTA[T/A]CGTTCCAATTCCCCATTGCCCTCCATCCAGCTCCAGGCCCAGTCCCCATCTGCCTCCCAAAAGCATCAGGCTGTCCAGGAGCTCCCTGCTGCCAATACCTTTGTGGGAACAGGCGGGGATGACAACTCCACCGGCTCAGACCAGTACTCGGATTACAGCTACAAGACCAATCAACCAAAATACAGCACAAAAACGGTACCAATCTTTATTTTTGATTTATATTCAATGCAGCGCTGGAAAAAAATGGGGTTTGCTTCCAAAAACAAATGGTAGTTATGCTAAAATAGTAGATGGTGCTAAATGAATAGTTTGTTACATATATATTAAATATTTTTCTCTTCCTTTTTATAAGTATGTTGTGGTTGAATTGCTTGCACATACCACAGAAAAGACTTTCCTGGCATCCCCAAATCTGTCTCTTTGAAAGATGTCAAATATGGCTCTGGTATTGCATCATGTTCCCTTTATGTATTCTCTGGCCACTAGTTCAGTTTCTGAAA

Associated Phenotype:

Not determined