Busch Lab

ZMP

hoxd3a

Ensembl ID:
ENSDARG00000059280
ZFIN ID:
ZDB-GENE-990415-120
Description:
Homeobox protein Hox-D3a [Source:UniProtKB/Swiss-Prot;Acc:O42370]
Human Orthologue:
HOXD3
Human Description:
homeobox D3 [Source:HGNC Symbol;Acc:5137]
Mouse Orthologue:
Hoxd3
Mouse Description:
homeobox D3 Gene [Source:MGI Symbol;Acc:MGI:96207]

Alleles

There are 2 alleles of this gene:

Allele Name Consequence Status Availability
sa38720 Nonsense Mutation detected in F1 DNA Not yet available
sa21417 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa38720
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000082359 Nonsense 14 403 1 2
ENSDART00000146131 Nonsense 14 396 1 2

The following transcripts of ENSDARG00000059280 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 9 (position 1929850)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 1938254
GRCz11 9 1939051
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAACCTTCGCAATGCAGAAAGCCACTTATTATGACAATGCTGGACTTTTC[G/T]GAGGATATTCGTACCCTAAATCTGACTCCTACACGTACGGTCCAACACAC
Long Flanking Sequence:
TTTCCTATAACTTTGCCATCTGTGGTGTAATGCATTATGAAAATATAATTTGTTAAGCAATATTCATGAAATCCTCAATATAAGGAGGAGAAATGGAATCAAGCTTAACATCTGACACCAGTAATTGCAGAATTGGGAGAAATCTTTGTTCATCTGATATTTGAATGGTGAAGAGGCCATGATTTAATTTGCAGTGGGATCCATTTACATGATGTTTAGATTTGCAAAAAGGCATAGTGGTGTATGCATTTATGGAGGTTTTTATTATTTAAATATGAGGTCTCATTCTTTGTGATCTCGTATCCATGATTGTTTCAAGGTCAATGCAATCTTTACTAAAACTGGCTTATTTTCTTAGCAGGTCAAAGGACAGAAAATCTGTGGGAAGCTCCAATCACGTGATTCACAAGTCCATGCTATTGGACAGGAGTTCACAGGATCTCTAAGTTTGAACCTTCGCAATGCAGAAAGCCACTTATTATGACAATGCTGGACTTTTC[G/T]GAGGATATTCGTACCCTAAATCTGACTCCTACACGTACGGTCCAACACACCAGGGCTTCTCATCCTCCAGTATAGAGAATGACTATCAAAGCCCAATTTGTCCAATTCAAACTACATCAGTCCGGCAAGCAACCCATAAAAACGGAGACATCAATGGCAGTTGTATGCGACCAAGTGCCAGTCAGGGCAACAGTCAGCCAGAGAGTATCAGTGAGCAGCAGCAGGCTGCTCCATTAGCGGCCAGCTCTCCCAGCCCCAGCACTAACTCCACACAAAAAAAGAAATCCCCCAGCTCTAATGGATCCAGCACTGCCACCCCAGTCATCTCCAAGCAAATTTTCCCCTGGATGAAAGAGACCCGCCAAAATGCAAAGCAGAAAAGCACCAACTGCCCAGCAGCAGGTATGGGCTTTGCTTGAGTGAGTGTGTGTGCGCGGCTGGAGAGAATAGTTTTATCTACCCAGTATAAGATGAATAACTACAGTCGGAGACAGCTACTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa21417
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000082359 Essential Splice Site 147 403 1 2
ENSDART00000146131 Essential Splice Site 147 396 1 2

The following transcripts of ENSDARG00000059280 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 9 (position 1929447)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 1937851
GRCz11 9 1938648
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGAGACCCGCCAAAATGCAAAGCAGAAAAGCACCAACTGCCCAGCAGCAG[G/A]TATGGGCTTTGCTTGAGTGAGTGTGTGTGCGCGGCTGGAGAGAATAGTTT
Long Flanking Sequence:
TCACAAGTCCATGCTATTGGACAGGAGTTCACAGGATCTCTAAGTTTGAACCTTCGCAATGCAGAAAGCCACTTATTATGACAATGCTGGACTTTTCGGAGGATATTCGTACCCTAAATCTGACTCCTACACGTACGGTCCAACACACCAGGGCTTCTCATCCTCCAGTATAGAGAATGACTATCAAAGCCCAATTTGTCCAATTCAAACTACATCAGTCCGGCAAGCAACCCATAAAAACGGAGACATCAATGGCAGTTGTATGCGACCAAGTGCCAGTCAGGGCAACAGTCAGCCAGAGAGTATCAGTGAGCAGCAGCAGGCTGCTCCATTAGCGGCCAGCTCTCCCAGCCCCAGCACTAACTCCACACAAAAAAAGAAATCCCCCAGCTCTAATGGATCCAGCACTGCCACCCCAGTCATCTCCAAGCAAATTTTCCCCTGGATGAAAGAGACCCGCCAAAATGCAAAGCAGAAAAGCACCAACTGCCCAGCAGCAG[G/A]TATGGGCTTTGCTTGAGTGAGTGTGTGTGCGCGGCTGGAGAGAATAGTTTTATCTACCCAGTATAAGATGAATAACTACAGTCGGAGACAGCTACTATCATTATGACCCAGTTCCTTTTGTTTACAGTAGGCTGTCTCGCTTTGGCCTTTAAGTGATGTAATAGGCTGTGTAACACAATTAATCCATTGCACATTTCTGCTCTTTGTGTTCAGGAGAAACCTGCGATGACAAGAGTCCGCCTGGCCCTGCGTCGAAACGAGTGCGCACTGCCTACACCAGCGCCCAGCTAGTCGAGCTGGAGAAGGAGTTTCATTTCAACCGCTACCTGTGTCGCCCCAGAAGAGTGGAGATGGCCAATCTGCTCAACCTCACCGAGCGCCAAATAAAGATCTGGTTTCAAAACAGAAGGATGAAGTACAAAAAAGATCAGAAATCTAAAGGCATAATGCACTCTCCCTTAGGACACTCTCCGGACAGGAGCCCGCCGTTAAGTGGCTCG
Associated Phenotype:
Not determined