ZMP

gata6

Ensembl ID:

ENSDARG00000035831

ZFIN IDs:

ZDB-GENE-000622-1, ZDB-GENE-000622-1

Description:

transcription factor GATA-6 [Source:RefSeq peptide;Acc:NP_571632]

Human Orthologue:

GATA6

Human Description:

GATA binding protein 6 [Source:HGNC Symbol;Acc:4174]

Mouse Orthologue:

Gata6

Mouse Description:

GATA binding protein 6 Gene [Source:MGI Symbol;Acc:MGI:107516]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa38164	Nonsense	Mutation detected in F1 DNA	Not yet available
sa38163	Essential Splice Site	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa38164

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000051998	Nonsense	272	501	2	7
ENSDART00000051999	Nonsense	160	383	4	11
ENSDART00000077947	Nonsense	158	382	3	8

Genomic Location (Zv9):

Chromosome Zv9_scaffold3540 (position 173762)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	2	4367902
GRCz11	2	4208851

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CGGCGGCGTGGCCCGCGGGACCCTTCGAGAACTCCATGCTGCACTCACTG[C/T]AATCCCGAAGCGCACCGCTGGCCATCAGGGGCCCCAACGGAGGTGAGCTG

Long Flanking Sequence:

TCATTGTGGACCCTACCGACATGTATCAGACCCTGGCCATCGCGGCGGCCCAGAGCCAGGCCGGTTATAACGACACGCCGTCGGCCGGTTACATGCACTCCAACCCCACTTCTCCCGTTTATGTGCCTACGTCTCGCGTTGGAACGATGATACCGAATTTGTCTTACCTGCCACCCGGCGTGTCAACACAGCCGAGCCACGCGGTGAGCAGTCACTCGGTGTGGTCTCAGCCCGCGCCCGAGAGCCCGTCCTACAGCACTGGAAGCCCGCATACCTCCAACCGGTTCCACTACTCCCCAAGTCCGCCGATGAATAACGGCACATCGAGGGATACCAGCTACACTACTCCTCTGAATGTAAACAGTCGCGACCAGTACCTTTCAAGACCGATAAGTGGATCTTACCCGAGCCCGTACCCTCCGTATGTCACACCGCAGCTCTCACAGCTACCGGCGGCGTGGCCCGCGGGACCCTTCGAGAACTCCATGCTGCACTCACTG[C/T]AATCCCGAAGCGCACCGCTGGCCATCAGGGGCCCCAACGGAGGTGAGCTGTCGCTGATCATCACACAGAGTATATGTGCTGTATATTTCTGACTATGAAATTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGTGTAATAATAATACTAATACTTCTACTACTACTACTACTACTACTTATAATAATAATAATAAATGCATAAATAATAATAAATATATACTTGAACGGCCATTATGATAATATTAATAATATAAGATAATTTAATATAATAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTTATTTTGCGTATTAACTAGTCGAAACTATTTTAATTTTATATTTTTTAATTATTAACATTAAATGTATGTCGAGTTCAGATGCAAAAAAAAAAAAAACTCTGTGTCACCTGAAAGTTTCTTCTAATATTGCCATTTTTTTCTTAGGC

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa38163

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

G > T

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000051998	Essential Splice Site	412	501	5	7
ENSDART00000051999	Essential Splice Site	299	383	9	11
ENSDART00000077947	Essential Splice Site	298	382	6	8

Genomic Location (Zv9):

Chromosome Zv9_scaffold3540 (position 166241)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	2	4375423
GRCz11	2	4216372

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

GACAAGGAAAAGAAAACCAAAGTCTTTGAGCAAAGTGAAAGGATCATCTG[G/T]TATGTTTAATAATGTTCATTTAAAAGCATTCCTTCATGTGTGGTCAAATG

Long Flanking Sequence:

TATAGATTCAGTTAAATATAATATAATCAATATATGAACAATATCATCTTTATTAAGGGGCATCATAGTGGCGCAGTGGGTAGCACGATTCGTTTGCATGTTCTCCCTGTGTTCGTGTGGGTTTCCTCCAGGTGCTCTGGTTTCCCCCACTGTCCAAACACATGCGCTACAGGTGAATTGAATAAACTAAATTGGCCGTAGTGTATGAGTGTGTATAGGTGTTTCCCAGTACTGGGTTGCAGCTGAAAGGGCATCCGCTGCGTAAAACATATACTTTATGTTATTTTATACTTTATGTATACTTTATGAATAGTTGGTGGTTCATTCCACTGTGGTGACTTCTGAAATAGAAACTAAGCCAAAGGAAATGAAATGAAATGAATATTTTAAACAAAATAACATCATGTTTTAGGTGCCTCGGCCCCTTGCCATGAAGAAAGAAGGCATTCAGACAAGGAAAAGAAAACCAAAGTCTTTGAGCAAAGTGAAAGGATCATCTG[G/T]TATGTTTAATAATGTTCATTTAAAAGCATTCCTTCATGTGTGGTCAAATGCAGATTAACTGACTGTAAAATAAAATGATCCACAGGCAGCAGCTCGGTCCCCATGACTCCAACTTCTTCATCGTCTTCTAACTCAGAGGAGTGCACAAAAAACAGTCCTTCGTCAACACAGGTGCCTGTAACATCAGTGAGTGTATAATCTTAGGTTTTTAAAATCCGCATTTATCAGCATGAAGTCTCATAATACATTCAGGATGAGTCAGAGGAGACAATATTCTATAATGACAAAAATGTGTACACTGTAAAAAAATATGACAAAAAGTAACAACAACAATTCTTAAGGGCACACTGTATTTTGATGGTCCGTTTGTTGAGTTTAAGTTACATGGCATCTACATGCTCAATAATTCTTATTAGATTATAAGTAGACTGTTAGGTTGGGGTTAGGATTAGGGTTGAGGTTGGGATTAGTGTTAGTTGACATGTACTTGCAAAGTTTCT

Associated Phenotype:

Not determined