ZMP
si:ch211-146l10.2
Ensembl ID:
ZFIN ID:
Human Orthologue:
VPS41
Human Description:
vacuolar protein sorting 41 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:12713]
Mouse Orthologue:
Vps41
Mouse Description:
vacuolar protein sorting 41 (yeast) Gene [Source:MGI Symbol;Acc:MGI:1929215]
Alleles
There are 8 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa30047 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa44094 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa24448 | Nonsense | Available for shipment | Available now |
| sa18279 | Essential Splice Site | Available for shipment | Available now |
| sa24447 | Essential Splice Site | Available for shipment | Available now |
| sa37829 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa30047
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000092975 | Essential Splice Site | 190 | 854 | 8 | 29 |
| ENSDART00000143390 | Essential Splice Site | 190 | 855 | 8 | 29 |
| ENSDART00000145845 | Essential Splice Site | 171 | 736 | 6 | 24 |
Genomic Location (Zv9):
Chromosome 24 (position 9730239)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 24 | 9789123 |
| GRCz11 | 24 | 9929509 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACCAGTGTGAAATGGAGAGGAAATCTTATCGCCTGGGCAAACAATGTGG[T/A]ACGGACAGATTAAAATATGATAATCATGATGCGTTTCTCACAGGACATGA
Long Flanking Sequence:
CTTAGTTAATGTTATTCATTTGTTAACAAAAGTCATTTCATTCTCATTAACTCATAAGCAATGTTAACAAGTACAGCTTTGTATTTTAATAAAACATTAGTAAACTTTGATATTAACATTTAACTATGGTTAATAAATGCTGTTCAAGTATTGTTTATTTTATGTCAATGTTAGCAAGTATACATTAACAAATGGAACCTTATTGTGAAGTGTATCCGCATAAACATTACCAAGTAAGTCACACTGACTTCAGTAGTTTGGTACGTATTTGTGCTCTATGTTCTACTGCCCTCTGCTGGTTAACCCCAAGGAATACAATTTTTTTTTTCATACCGGTGAATGTCTTTCATCACTGATATTATTGGAATATTCTTCATAGCTTTTGCTGTATGAGAGGAACTGGCTGAACCGCTGGAAGACTTCAGTTCTGCACGAAGGAGAAGGAAACATCACCAGTGTGAAATGGAGAGGAAATCTTATCGCCTGGGCAAACAATGTGG[T/A]ACGGACAGATTAAAATATGATAATCATGATGCGTTTCTCACAGGACATGATTTGATCTAAAATGTTGTTGTCTGACAGGGTGTGAAAATCTATGACATAGGCAGTAAACAGCGCATCACTAATGTTTTGCGGGACAACACCAGTCTTAGGCCGGATATGTATCCCTGCAGTCTTTGCTGGAAAGACAACACCACGCTGATCATCGGCTGGGGCTGTTCTGTTAAGGTTTGTGTACTGGTTTTGATGGTTTATGAGGACAAATTGGTATAAATTTGTTTAATGACAGGAGTATGACCTTGGTAGTACAACGTTGTGTTCTGTTAAGGTGTGTGTGTACTGATTTTGATGGTTTATGAGGACAAAATGGTATCAATTTGTGTAATGACAAGGGTATGACCTAGGTAATACAATGTTGAGGTGGTTTATGAGGACATGCCTTGTATCCTTGTAGTTCAAAATACTTAAACATTTAAAATGTGACTCAAATTTTCTAAGGATTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa44094
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000092975 | Nonsense | 258 | 854 | 10 | 29 |
| ENSDART00000143390 | Nonsense | 258 | 855 | 10 | 29 |
| ENSDART00000145845 | Nonsense | 239 | 736 | 8 | 24 |
Genomic Location (Zv9):
Chromosome 24 (position 9728228)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 24 | 9787112 |
| GRCz11 | 24 | 9927498 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTGTTAAAGAGCGTGACCCAACAGAGATGAGGGATCTACCCAGTCGCTA[T/A]GTTGAGATCGGTATTGCTATGTTCACTACTGAATCTCTTATAAAAGTACA
Long Flanking Sequence:
AAATGCTATAAATCATACAAAACAAGTTATTTTAAAAAGGTAAAAATGTAGATTGTTTGATTTAGGGTTGGGTTAAGGAAGGGTCACCAATCTCAGCCTTGGAGGACTGGTGCCCCTGCAGGGTTTAGCTCCAACTTGCCTCAACACACTTGCCTGGATGTTTTAAGTATACCTAGTAAGACCTTGATTAGCTTGTTTAGGTGTGTTTGATTAGAGTTGGAGCTAAAGTCTGCAGGACACCGGCTCTCCGGGAACAAGTTTGGTGACCCCTGGATTAAGAAGTAGGTTTGAGTAACCCACATCAGGATAGTAAAATGTGTGTGTGTGTCTGTGCATGTTTAATTGTATCAAACTGCTGTTTGTACTACCTGTGAATCAGTTGTATTTGGGTTGAATATTATTCAGCAGCTAATTTTATTATATATTTGTTTTTTGTTTTTTTAGATCTGTGCTGTTAAAGAGCGTGACCCAACAGAGATGAGGGATCTACCCAGTCGCTA[T/A]GTTGAGATCGGTATTGCTATGTTCACTACTGAATCTCTTATAAAAGTACACACAATGAGAATATGTAACCTTAATAAAGGGATAGTTCAAGCTAAAATGAAAAATTTTCTCTCTGTATTTACTCTCCCTAATGTGCCTCCAAATATTTATGAGTGTCTTGTTTTCTTTTGAACACAAAAGCAGGTATTTGGAGGAATGTTAGAAACTGGTAACCATTGACTTCCATAGTTAGAAAAACAAATACTATTGAGATCAATGGTTGCAGGTTTCAGCTTTCTTTAAAATGTTTTATTTTGTGTTCAGCAGTAGATAGAAATCCAAACTGGTGTGACAAGTGATGGGGGAATAAATGATTACAAAATTGTCAGTTTTGTGTGAACAGAATATGGAAGTTCTTTAATTATTTACTCTCTTAATTCTTGTTTTTTGTTTTTGTCTGAATGTAGTGTCAGCATTTGAGACAGAGTTCTTCATCAGTGGACTGGCACCTTTGGCAGATC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa24448
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000092975 | Nonsense | 370 | 854 | 13 | 29 |
| ENSDART00000143390 | Nonsense | 370 | 855 | 13 | 29 |
| ENSDART00000145845 | Nonsense | 351 | 736 | 11 | 24 |
Genomic Location (Zv9):
Chromosome 24 (position 9722666)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 24 | 9781550 |
| GRCz11 | 24 | 9921936 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CATCGTAGTGGCTAAAGAAAGAGACCAGGATGACCACATTGACTGGCTTT[T/A]GGAGAAGAAGAAATATGAGGTACATGTCTAAGCAGTATGTATTGTTCAGG
Long Flanking Sequence:
ACAATGGCATTCAAACTCACACTGTTAGCTTTTAACACTGACTAAAGCACATGAGGTGTACCTGAGGTAATCATAATTCATCTTGTTGTTCAGCTGCTAAAAATAGAAGCCATTTCTAAAATATAAATTCAAAGTGTGGGTTGGAACAAAAACTCCTTTTAATATGGAAAATATTCTTCTATAGCCGTTGCTTTCAGTTATACATAATTTAAATCAACTTTAAATCAGCCTTTAGGCCTTTAAGCTCGATAGTCACTCGCTTCTGTTGGTCCTCAATCTGGCAACCTGCGCTTGCTTGTGTTTTGATCCAGGAATGCAATGCCTAGTTCAACCACTGGGTGTCAAACTTACATACTGCACCTTTAATGATCATTATTTTAAAGTTCATCTGTTTGTGCTTATAGAACACTCTGAGGGAGAGTCTTTATTCTACATCATCAGTCCTAAAGACATCGTAGTGGCTAAAGAAAGAGACCAGGATGACCACATTGACTGGCTTT[T/A]GGAGAAGAAGAAATATGAGGTACATGTCTAAGCAGTATGTATTGTTCAGGTATGTGCCAAAAAGCTAAAATATTGAGGGAAAGTCCATTTATTTCTATAAGTTCTTTCAAAAAGTGAATGTTATGTTAGTTAACTACACACAAAGTGAAATATTTCAAGCTTTTATTTGTTTCAATTTTACTGGTTATGGATTACATAAGTTAGATCACAAAATTTGATTATTTCATGCATGTGACTTAATAAAAGAAAGCATCCTAAACATATGTTGAGCTTCTGAAAATTGTGTTGATGCACTTTATTGTGTCCTTAGTACTTTGTTGGGGCTGCAAGCATCAAGGTGGTGTTGCATGGAGCCTTTGACAATGTTGAGATGTTATTGTAGCCTAATTTGCTATAATATTACTGGCCTTCAGCTCTGCATTTTGGGGTCTCTGTTCTCTCATCTTCCTCTAGACCAGGGGTCACCAAACTCCTGGAGGTCCGGTGTCCTGCAGATTTTA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa18279
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000092975 | Essential Splice Site | 395 | 854 | None | 29 |
| ENSDART00000143390 | Essential Splice Site | 396 | 855 | None | 29 |
| ENSDART00000145845 | Essential Splice Site | 377 | 736 | None | 24 |
Genomic Location (Zv9):
Chromosome 24 (position 9720508)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 24 | 9779392 |
| GRCz11 | 24 | 9919778 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AATGGCAGCAGAGATCAGCTTTAAAAATATTAAAAGGCATGATGTACAGG[T/A]AAAATCAAATGGCAAATGTGGATTAWTGAAGTGYGGAAGAATNNNNNNNNTATTACCT
Long Flanking Sequence:
ACAAATTGTTGAAATAAACAGACTTTCACTCGATATTCAATGTTTTGGCACATACCTGTACATGGCGAGAAGCACTCAACTAGCTTTTTCCAATGAGGTGAGCTATTTGCACTTAGCCAAAATAGACACTCCAAATCGGCATTTTAAACAGTTAAACTATATAGTATAAGATAACACACATACAGCTGCCTAAAGAATGCTGTTTTCACACTACTTACAGGTAGCTCACGTGATCAGTATACTGTATCAGTTCAGAATGCTCACCATGTTACATAACTGCCCCCTGCTGGCCATGTTTTTCTTGTGTTAAACCATGTTGTGTTGTGACGCAGTTTACTGCGGAAATCACTCGCGTGTTCTCAGTAGCCATATCTGTATATAACATTTAAAAATCTGAGTTGTGCTTTAATGATTTCTGACTTGATTTGGATCTTTTTTACAGGAAGCACTAATGGCAGCAGAGATCAGCTTTAAAAATATTAAAAGGCATGATGTACAGG[T/A]AAAATCAAATGGCAAATGTGGATTAATGAAGTGCGGAAGAATTATTACCTCCTACATGATCTGTAATCATAATGTGGGTAATTGCTGAATGTGTTCTGTGTATAGAAAATTGGAATGGCGTACATCAATCATTTGGTGGAGAAAGGAGATTATGACACAGCTGCCAGGTACGGGTCATCAAGAGTGTGATTTATATACTTGTAAACCATTTATGCCTGAAATTTATACTCGTTTTATTCATTTTCTCCATATTTCCCATTGACAGAAAGTGTCAGAAAGTGCTAGGAAAGAATATGGATCTTTGGGAGAATGAAGTGTACAGGTTCAAAACAATTGGCCAGTTGAAAGTGAGTGTGTCGAAATTGTGCTTTATATGTTTATTATTTTTGATGCCCTATAGAACCGTAATTAGAATAGTACACTCTAAAAAATATTGTTTAGACTAAACAAAAAAAAATTAACGGAACAGTTTGCATCAGTATATTCAAGCTACAACAAGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa24447
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000092975 | Essential Splice Site | 517 | 854 | 19 | 29 |
| ENSDART00000143390 | Essential Splice Site | 518 | 855 | 19 | 29 |
| ENSDART00000145845 | Essential Splice Site | 499 | 736 | 17 | 24 |
Genomic Location (Zv9):
Chromosome 24 (position 9714311)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 24 | 9773195 |
| GRCz11 | 24 | 9913581 |
KASP Assay ID:
2261-8453.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAATATAGACCCCCCACCCACTTGCTAATATGTATGTGTTTGTTATGTAT[A/G]GATACACATATGATCAACGTTATGATCGAGCTCTGGAAATCTACCTGAGA
Long Flanking Sequence:
TAGTGAAGTAAAGTACTGATACCAGTAAAATCTACTTAAGTACAGTAACAAAGTATTTGTACTTTGTTACTTCCCATCTCTGGATTTATTTGATAATAGGCTACTGGACTTATTTTTCTATGAGAGTTTGAACTTTCAGAGTGTTTAAATAAGAAAGAAAAGTATGAAAATGTTAATGCCTGTCTGAGAAAAGGGTATAAAGTATGTAGTGAGGGGTTTCCTTCTATAATAATTGTAAGAAATAAAGCTGATTACTTTGCGGATTTCGGCTATCGTGGGTTATTTTTACAACATAACTCCCACGATAAACAAGGACCACTGTATACTATTATTGTATTGTTGGTGGAACTGTTTAGTATCGGCAGAATTCAGAAGTGTTTTTGAGTTTATTCAATTATTTATTTACTTGTCAATAATATAGAACTTTTTGTATAGAACAATATAGAATAATAATATAGACCCCCCACCCACTTGCTAATATGTATGTGTTTGTTATGTAT[A/G]GATACACATATGATCAACGTTATGATCGAGCTCTGGAAATCTACCTGAGACTGAGACACAAAGATGTTTACCAGCTCATTCATAAACACAACCTGTTCTCCTCCATCAAGGACAAGATTGTCTTGCTCATGGATTTTGACAAAGAGGTACAACATCTTTTTTTAATTCCTATGACCTCACCGAGGACCTTTATTTTAGAATTTAATACTGAAAACTTGAAAGGAAATGTCAAGTGCATAAGTTCAGGAAGTTATGGATTGTTTGGCCGATGATATATATTATAGATGACATTGGAAGAATGTGATTTATAGTCACAGAGATGTGTCTAAAGGATATGTCCGGCTCTTTGTTCTGTTTTTTTCCTCAGAAAGCTGTTGACATGCTGCTGGATAATGAAGATAAAATATCGGTGAGTTCAGTGCAGTGGCCTTAGTCTTCTGATTAAACGCTCCACTTTTTTTGGAAATAGACTCATTTTACAAGTTACTTATAGATAAACG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa37829
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000092975 | None | None | 854 | None | 29 |
| ENSDART00000143390 | None | None | 855 | None | 29 |
| ENSDART00000145845 | Essential Splice Site | None | 736 | 23 | 24 |
Genomic Location (Zv9):
Chromosome 24 (position 9706699)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 24 | 9765583 |
| GRCz11 | 24 | 9905969 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTTAAAACAGCATGATTTTTTGGCCGCATTTAATGTCAATGTCAATGGCA[C/T]TATTATGGCCCATTTCTACTGAGTGGTACGGTATGCTTTGGTTCAGTACC
Long Flanking Sequence:
CATAACAGTGAGATTTATAAAAAACAACTCGTTTTAAAAAGCAGAGCAGGGATGTTAATATAGATATTATTATACGGTATGTGCAAAACAATTTGTTTTTGAAATCTTTAAAAAATGTAAGCACATTACACCAAATACACAAAGTAATGTTCATTTTAGCAATGTCATATGACCCCTTCAACAGTTTGATTGATTTGACTGTCACAAGTGTCTAAGTCTGGTTTATGATACATGTTTGAGAGAAAGTGATGTAAATAAAACATTATTTATATTTCTCTTTTTATTTTCTGTACTGTAGCTTTTATCACAGGCCTCTTGAATAACATTGGAACCCATGTGGACCCAATCCTGCTCATTCATCGCATTAAAGAAGGGATGGAGATTCCTAACCTCAGAGACTCACTGGTCAAAATCCTACATGACTACAATCTACAGGTCTGATCAATACTGGTTAAAACAGCATGATTTTTTGGCCGCATTTAATGTCAATGTCAATGGCA[C/T]TATTATGGCCCATTTCTACTGAGTGGTACGGTATGCTTTGGTTCAGTACCAAATACGAGAAAGGGTAACAAAAGGCAGAGCTAGATGCGCAGCTGAACGCTATTGGTTTACAGAGATACGTCATTCGCTTTCGCAACAAGCCAGAATGAAAACAAAGGATCCGCCATGTTTAAAAAACACAGCCGAGAGATTACAGCGTACAAAACAAACCGTGTCCTCGTCTTGATGAACAGCCACAAAGCCAAAAAGAAGAGTAGATTTACCCTGTGCCCCTTAGTTTTTTACGAGCCAGTCTGAAGCGCGAGCGGTTGGCTTTCTTGCTTACGCTCGCCGCGCGTCTATATCCGAAATAACAAACTTCTTGAACTCATGATAATAACGTGTGCTTGATTATTGACGTGTATTTGAAACCCAATCCTGTCAGAAACTGACAAACGCGAGAGTGAAGCGCAAAACGTGAACAAACTGCCATGTTTAACTATTATCATCACCTTTTGGAC
Associated Phenotype:
Not determined