ZMP
rdh5
Ensembl ID:
ZFIN ID:
Description:
retinol dehydrogenase 5 [Source:RefSeq peptide;Acc:NP_001025272]
Human Orthologue:
RDH5
Human Description:
retinol dehydrogenase 5 (11-cis/9-cis) [Source:HGNC Symbol;Acc:9940]
Mouse Orthologue:
Rdh5
Mouse Description:
retinol dehydrogenase 5 Gene [Source:MGI Symbol;Acc:MGI:1201412]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa37435 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa3191 | Nonsense | F2 line generated | Not yet available |
| sa5966 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa37435
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000002348 | Essential Splice Site | None | 328 | 1 | 6 |
| ENSDART00000128590 | None | None | 344 | None | 5 |
Genomic Location (Zv9):
Chromosome 22 (position 10231927)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 10092095 |
| GRCz11 | 22 | 10121777 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGTGTTACGCATGTTAGCGCCCTGTGACTACATAATCTAAGAGAAACACG[T/C]GAGTCAATATTGTTCAATAAGCCTCCAAAGAGCACGTTACGTCACTAAAG
Long Flanking Sequence:
AGGACTTTTATTTTGAAAAAAATTTCTTAATTGTTTATTCTAGCAATTGATTGAGACGTGGTTAATTTTTAAAATATCATAAGAAATAACTCAAGCATTGTATGTAAACAGATTTTTTAATATTATTATTATTATTTATGTTTAATTAAAAATTTTATTCGTTTTTCTAATAAGCCAACATTTCTCATAGCTTAATGAGACTAGGAGCTTAAATCCTCCCTGTCATTGTTTTTTAGTATCCTGAAAGAATCCTCAACATTTTTCTTTGCCAATTAGCCACCGAAGCTAATAGGTTTTGAACTTTGAGAAGCTTATAGTGTTTACTGTGCTGCTGGATTTTCACTTTTTTTTTTTTACGGAAACCGTCTCAAACCCTACTCCGATACCAAAGTCTCCCATTGTTTCTTAAGAGCCTTAGCTCGAGATTTCTCATGTGCTCTGAAAAACGACAGTGTTACGCATGTTAGCGCCCTGTGACTACATAATCTAAGAGAAACACG[T/C]GAGTCAATATTGTTCAATAAGCCTCCAAAGAGCACGTTACGTCACTAAAGTTTTATGGTTTACGCGTCAATTCATGGGGTAGATTACGTGAATATTTTGTTTGCAGTTAATCAGCTCTAATTTAATTATGCAAATGTTAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTATATACACACACACACACACACATATATATATATATATATATACAATTTCTGTTTAATGAAGAGAAGATTGTTTCAGCACATTTCTAAGCATAATAGTTTTAAAAACCTTTTTCTAATAACTGATTTATTTTATCTTTGACATGATGACAGTAAATAATATATTTTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTTGGTTAATTAGGTGAACTAGGCAGGTTAGGGTAATTGGGCAAGTTATTGTATAACGATGGTTTGTTC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa3191
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000002348 | None | None | 328 | 2 | 6 |
| ENSDART00000128590 | Nonsense | 3 | 344 | 1 | 5 |
Genomic Location (Zv9):
Chromosome 22 (position 10228067)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 10088235 |
| GRCz11 | 22 | 10117917 |
KASP Assay ID:
554-3324.1 (used for ordering genotyping assays)
KASP Sequence:
TGCTGTGTTTTTCTTTTTCNNTTTTTTACGTCACTGGCATTCTACCAAAAGG[C/T]AATTGTTTACAAAACATCTCCGCAGAGCCACTCAGGAGGTAGAAGCGATG
Long Flanking Sequence:
CATCATTTGGGAAATATGTAAAAAAAGAAAAAAGATTTATATATATATATATATATATATATATATATATATATATATATATATATATTTAAAATATATATATATTTAAAATATACATCAGTTTTGCTTAACAACAACAAAAAGTGTAAAGGAAATGTTTAAAGTGTAAAGAAATAACGAAATTAACTTATATTTGTGTAATTCAATCAATAACTTTAATTATTAAAACAAATCTGCAAACAAATTAGAAATTGATTGTGTTTTATAGTTGTAAAATATTTAAAACACTTTAGAATGCATAGGATAAATTATTCAAATTTTTCAATAAGTTCAGATTATTATTATTTTTTTACATTACAAAATGCTTTGCTTTGTTGGATTATTATGGTGCCCCTTGTGGCGATTAAATGCATTGCATCCTGATTCTTCCTGCATTAATTACACCTGCACTGCTGTGTTTTTCTTTTTCTTTTTTACGTCACTGGCATTCTACCAAAAGG[C/T]AATTGTTTACAAAACATCTCCGCAGAGCCACTCAGGAGGTAGAAGCGATGTATGAGTTCTTGAGGTAAGAGCATGTCTGATTACAACACTGTAAGCAAATGCACCAACTATGTAAACTTTGCACTAAACATTTTGTGCTTACAATAACAGCTGTCCCAGCACATATGCATTGGGTACGTTTGCGATTCTGTGGGTTCTGGTATGGTTCTACCGGGACAACCTAAAGATCACTAGAGTCTCAGAAAAACATGTGTTTGTGACCGGTTGTGACTCTGGTTTTGGTAACCTACTGTGCAAACGTCTGGACAAACGTGGTTTCCGCGTCCTAGCCGGGTGTCTTACGGAAAAAGGCGCAGATGATCTGAAAAGAGCCGCAGGACCTTTCTTGAAGACCTGCATTTTGGATGTGACCAGCTCGGCTAGCATCCAGAAGGCTATGGAATGGACCAAAAAAGAAGTTGGAGATAAAGGTGAGCTTAAGTTTTGGGCCTCGAAAATAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa5966
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000002348 | Nonsense | 302 | 328 | 6 | 6 |
| ENSDART00000128590 | Nonsense | 318 | 344 | 5 | 5 |
Genomic Location (Zv9):
Chromosome 22 (position 10223548)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 10083716 |
| GRCz11 | 22 | 10113398 |
KASP Assay ID:
554-3854.1 (used for ordering genotyping assays)
KASP Sequence:
GTCCACCCAAGAACTCGCTACAGCGCTGGCTGGGATGCCAAGTTTTTGTG[G/A]ATCCCCTTGTCTTATATGCCTGCTTGCTTTGTCGATATTGCCTTGAAGCT
Long Flanking Sequence:
ACCGCAAGTCATGTGACAAGAACTGACTAATTATCTCAAACACAGAACATCCAAAAATTGCAATGCTTTGTCATTTTCTCCATAAATAAAACTGGTCCATGATGATAAAAAGGTTGGGGACCACTGCAACAGGGTCCACATTTATTTCAGTTTCCGCTTCCGGAAATATCAAAGTATCGATTCGTGCTGTACCACTTTTTTGGGACTCTTTACTTTTTGTATCTCATAAACAAAGCATATATATGGCCATACAACGATGTAAAACATATAGTTTCATTTATTTGTAATATATAAAATTCTATTTTTTGTTTTAGAAATAATTTTAAAAAAAGACTAAAAAACACTATTTTTATCTCTCCAGACATCTGGATCCAGAGGCTGATCATGAACGCCATCTGCGACTCTGACCTCAGTAAAGTGACCAACTGCATGGAGCACGCTCTGCTAGCCGTCCACCCAAGAACTCGCTACAGCGCTGGCTGGGATGCCAAGTTTTTGTG[G/A]ATCCCCTTGTCTTATATGCCTGCTTGCTTTGTCGATATTGCCTTGAAGCTGGTGATGCCAAAACCAGCAAAAGGTGTTTAAATTTGGAGTGCGGTTAAAAAAGGTTATTTTAGACCAGAAGCTCTTAAACTCTTACTATTGGTTTCTTTCTTATACACTGGATGCCGCTTCATTTTGGGGTTTTGACTAGATGACTGTGAATTTAGTTATGTATTTATGAGATCTAAATTTATATATTTATGAATAATTAAGTGTGTCCATATTACTTTCAACACCTTGCCCTTATTTCTTGTTTCTCAATGGCATTTATTTCTCTTGCCTAATAAGTGACTTTTGCCTGAACTTGCCTTAAGTCAAATCAAATATTCATCACTGTTTCTGACATAAGTATTTGCTTCACGGTGAAACAGATGTATTGCCATTAATTGTTTGAAAGTGTCAGTTGCTGGTTTTCACATTGTGCCACATTAACTATTAAATGGAGTACACATAAGTGTAAG
Associated Phenotype:
Not determined