ZMP
im:7154842
Ensembl ID:
ZFIN ID:
Description:
CAPN1 protein [Source:UniProtKB/TrEMBL;Acc:Q58EB1]
Human Orthologues:
CAPN13, CAPN14
Human Descriptions:
calpain 13 [Source:HGNC Symbol;Acc:16663]
calpain 14 [Source:HGNC Symbol;Acc:16664]
calpain 14 [Source:HGNC Symbol;Acc:16664]
Mouse Orthologue:
Capn13
Mouse Description:
calpain 13 Gene [Source:MGI Symbol;Acc:MGI:2685789]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa36517 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa2897 | Nonsense | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa36517
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000074854 | Nonsense | 180 | 726 | 5 | 22 |
Genomic Location (Zv9):
Chromosome 17 (position 45748157)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 17 | 45597389 |
| GRCz11 | 17 | 45580641 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATCCACACTTCTGTTGTTGTAAATTTATAGTTCTGGCGCTTTGGAAAATG[G/A]TTCGATGTAGTGATTGACGACAAGCTGCCAACAATCAATCGCCAGCTGAT
Long Flanking Sequence:
CTTATCACAAATCGAAAAACAGGATTATTTTGCTTACCCCATTGGCAGATTATTTAGCTTGATTTAAGGAAAAACTCACTTCGTTTTGGCCTGTTATTTCTTAAAACAAGACAATATGTTTTGCTTGTCTAGAAAATGCTTCTTGATTTAAGAACTTTTAGATATTTTTTACCAGAAATAAGACAATAAATCCAAGTAAGAAAAGCATTTTTTTGCAGTGTAAGTATCAGATTCACTGTTGTTGTGTTGTTATTTTTCCTCAGGAAACTGTTGGTTTCTGGCCTCTGTTGGTGCCTTAACATTTCAAAGCAAATTACTGCAAAAGGTTGTTCCAGATGGACAGTCACTCAGACACAATTACACTGGCTTATTTCACTTCAGGGTGAGTTCCTTCTTTTTTTGCCATCTTATAAATCATTTATTTGTGTTCCGCACCTAAAATAACTGTTTATCCACACTTCTGTTGTTGTAAATTTATAGTTCTGGCGCTTTGGAAAATG[G/A]TTCGATGTAGTGATTGACGACAAGCTGCCAACAATCAATCGCCAGCTGATCTTTGTCAAATCTAAAACATATAATGAGTTCTGGCCAGCCTTGCTGGAGAAAGCATATGCCAAGTAAGTGCTGTTAAATCTTTAAAGTTATGAAATATAACCTCAAGCATATGTAAGCAATAGCGCTGTTGTTTTTAATACAAGCATGGTTGTAATTCATGTGCAGTAGTAATGCTCAAAATTTATGTCTGTTTCACTGCGGCGAAACAATTTAGAGCTAGAATGACTGTTGCAGGGTATGTGGCTCCTATGCTGACATGCACACCGGCCGAGTGTCTGAGGCCCTGCTGGACTTCACTGGCGGGGTTCATATGCACTACGATCTGAAAACGGCTCCGACTGATCTGTGGGAGATAATGTACCGTGCTTCCCAGTCAGAGGTCCTTATGGGCTGTGAAAGCCCAGCAGGGGTAAGCCAAAAGAGATTATATCCTACAGTTGTGGTCATTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa2897
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000074854 | Nonsense | 604 | 726 | 17 | 22 |
Genomic Location (Zv9):
Chromosome 17 (position 45762141)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 17 | 45611373 |
| GRCz11 | 17 | 45594625 |
KASP Assay ID:
554-2540.1 (used for ordering genotyping assays)
KASP Sequence:
CATGATCTTTTAGGGAGAAAAAATGCTGAAGGATTTGGGCTGGATTCCTG[T/A]AGAAGTATGATWGCCATGTCAGATGTATCCTTTCTTCTTGAAAATCGNNN
Long Flanking Sequence:
CTTGCCAACATTTTAAATATTATTAATATGATCCATTTAAGATTACAGAGAGCTGCTACAATATTTAAAAGTTGTAAAGAGTAGATACAGCAGATTTCAAATTTCTTGTCTTTCCTTTCTCACCTTCAGTCTGGTTGCACAGAAAAGGAGGATGAAGAGTCAAAAACAAAATTTCTGTTTCGACAGTATTCTGATCAGGTAAATATGAAATCTAACACCCAATCAAAATTAAAATGAGATCCAAAAAATTTAACAAAATAATAAAATATCGCTTAAATGCCTTTATTGGAAACAGTACAAAGTTGTGGATGCTGAGAAACTCCAGCAGATTCTTCATGAAAATCTGCTTAGAGGTGAATTAATATTTTTTATTGATGAAATACTGACAATTCTGAAATCTTAAACTACGATAAATGTAGATGAAATCTTGCAAATGTCTCTTTTGTGTTTCATGATCTTTTAGGGAGAAAAAATGCTGAAGGATTTGGGCTGGATTCCTG[T/A]AGAAGTATGATTGCCATGTCAGATGTATCCTTTCTTCTTGAAAATCGTTCATTGATTCATTGATTCATTCATTTTCAGCGTAGTCCTTTTATTAATATAAATATTATTAATAATATTTATATCCATGGTCACCACAGCGGAATGAACCGCCAACTTATCCAGCACATATTTTACGCAGCGGATGGCCTTCCAGCTGCAACCCATCTCATGGGAAACATCCATACACACTCATTCACACTCATACACTACGGACAATTTAGCCTACCCAATTTACCTGTACCGCATGTCTTTGGAAACCTGAGCACCCAGAGGAAACCCACGTGAACGCAGGGAGAACATGCAACCTACATACAGAAATGCTAAGTGACCCAGCCGAGGCTTGAACCAGCGACCTTCTTGCTGTAAGGCGACAACTGTAGTAACTGTGCCACCGCGTCACCTTCTTGAAAATCATGTAAAACATAATTAGTAGTATTTGTGTTGTTAAGAAACCAGCTTTA
Associated Phenotype:
Not determined