Busch Lab

ZMP

rbm42

Ensembl ID:
ENSDARG00000039910
ZFIN ID:
ZDB-GENE-040809-2
Description:
RNA-binding protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q6DRG1]
Human Orthologue:
RBM42
Human Description:
RNA binding motif protein 42 [Source:HGNC Symbol;Acc:28117]
Mouse Orthologue:
Rbm42
Mouse Description:
RNA binding motif protein 42 Gene [Source:MGI Symbol;Acc:MGI:1915285]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa36247 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa22937 Nonsense Available for shipment Available now
sa10920 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa36247
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000058380 Essential Splice Site 83 402 4 11
Genomic Location (Zv9):
Chromosome 16 (position 47732066)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 44930262
GRCz11 16 44896978
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCAAGAGCTGCAACTTTAGTTGGTCCACCACCCACATTTGTTTGTCCTGG[T/C]AAAACATTTTTCAGTATTTACACTTTTAAACATTCCCATGTGGAAATCGA
Long Flanking Sequence:
TTAGAAAAGCATAAAAACATTTTTTTAGAGAAATTTAGTTGAAATTTTGTAGATTGTAGTTTTTTTTTTTTTGCTATATTTTGCTTGAATTTTATTGTATTATCTTTTAATTTCTAAATATGTTTGGTGACTAAAATATAATTTTAATAAATATATGTTTAATAAATGTTTTATTTAAATGCACCAAATACATTGCCTATATTCACTGAGAAATGGATGAAAAAATTCCTTTTCAAAATGGAGTGTACTCAAATATGCTGAGCACTGCATCATGTTTATTTTGCTGTTTTCAAAAAAGGGCATGCATGTTATTTACAGACTATATTTAAGACATTTATGCATTCTAAGTTATACTTTTTGTTAAATTAATTAATCTATTTTTCATATTATTAGTTGGTCATTGATTTTTTTTGTTTGTTTGTTTCCCAAAAGGTCCAGCAGAGTTTGGAGGCAAGAGCTGCAACTTTAGTTGGTCCACCACCCACATTTGTTTGTCCTGG[T/C]AAAACATTTTTCAGTATTTACACTTTTAAACATTCCCATGTGGAAATCGACTAACAATGATTTGATATTTATCGACAGCTATACCAGCAGTACCACCTCCTCCAGTTCTGCGGCCTGCATTTGTCCCGCATGTCTTACAGAGGCCAGGTAATCAGGAGTAGAACTTTGTAAGATGTGTTTTAGTATTTGTCTAAAAGTTTTATTCACCACAAGTTTACCAGTATACTGAATTTATTAGTATATTTAAATCTTTTTTCTTTAATCCAGCAAAGAGTTTTAAAATAATTAGAAATATAATAAAAGTTTAAAATGTAATCACTTATTCTTTTATATGTATCTTAAAAGATCAGAATAGGCATGCATTTCTTTTCTTACATAAATATATCTGTTGAGCCTAATTAATTAACTTTATTAAGCTATATTTTGACATTTTGTTCCCACAAGAGTTATTTTAATGTTTAATGTTGAATTTATTTAATGTTAATAAACCAAAGGTGACC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22937
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000058380 Nonsense 225 402 8 11
Genomic Location (Zv9):
Chromosome 16 (position 47723581)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 44921777
GRCz11 16 44888493
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTGAATGTGCACTTCTTCACAGGAGCAGTTGTCAGCACTGGTGGCAGAA[C/T]AGCAGGCTGCTGTCTTGGCCGCTGGGCTGCTGGAATCCAAGAAGGAAACG
Long Flanking Sequence:
CCTCAACACACCTGCCTGTGTGTTTCAAGTATACCTAGTAAGACCTTGATTAGCTTGTTCAGTCGTGCTTGATTTGGGTTGGGGCTAAAATCTGAAAGACTCCGGACCTCCAGGAACGAGATTGGTGATACCTGCACTAAACAGAAACATTATTAATATACTCAATACAAATGTTAATCCAGCAGGGGGCGCCTACGTTGTTGCTTTGATTCCTAAAGTAAGCAAAGTAGTGTGATGTCAAATCTAGCAGGATTTTATTGATTTCATAAACTACACAGCATCCGGATATTTGCAAGTTAAATTAAGGCAAACATTAGCATACAATTACATATTGTATAATCAAAAACTATATAAAATTTAATACCTTTAAAATAGCATTGAAGACTTAAATTTATCTATATTGATTTGTCAGCTTTTACTTTTTAAGACCCCCCGGACACCCTGTGATCATCTGAATGTGCACTTCTTCACAGGAGCAGTTGTCAGCACTGGTGGCAGAA[C/T]AGCAGGCTGCTGTCTTGGCCGCTGGGCTGCTGGAATCCAAGAAGGAAACGGCCAGCGATGATAGTGTGATCGGGCCAAGCATGCCGGAGCCTGAGCCTGTACATGTGGAGGTTTGATATTCATTATTATTTTATTTTTCTTCTGCATATTTCCTGATATATCACAGCAGTTTGTACCACCAATTACTCTGGCATATGTTTTATGTGGCAGATACCCTTCCAGCCACAACCAAGCACTGGGAAACACCAGAGATGTATAGTAACGAAGTAGAACTACTTCACTACTGTACTTAAGTACTAAAAGGCAGTATCTGTACTTTACTGGAGTATTATTTTTTTCTCCTACTTCCACTTTTACTTAAGTACATATTTTACATGAATTTAATACTTTTACTCCGATAGATTTTTTATGTGCTGCATCGTTACTCGTTACTAGGGGTGTCAAAATGATTGATATCAGTTCAGTAATAGGTCATACCCGGTTTTTACGTGATGACGTCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10920
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000058380 Nonsense 336 402 10 11
Genomic Location (Zv9):
Chromosome 16 (position 47719692)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 44917888
GRCz11 16 44884604
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGCAAGAGCRTTCAGCCGGTATCCGTCCTTCCTGAAGGCGAAGGTTGTT[C/T]GAGACAAACGCACTGGGAAAACGAAGGGTTACGGCTTYGTCAGTTTTAAA
Long Flanking Sequence:
ATTAAATATTTCCTAAATGATGTTTAACAGAGCAAGGAATTTTGCACAGTATTTCCAGTACTAAAATGTTTTTACTTCTTGAGAAAGTCTTATTTGTTTTATTTTGGCTAGAATACAAGCAGTTTTTAATTTATTTTGATCAATTTTAAGGTCAATATTATTAGCCCCCTTAAGCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAACTAGAAACTTTTATAAGAAACTTTTGTTGAAAAATTGCTAACCTAGGGTTAGTTATGAGCAGTGTGCCAAAGTAAAGCAATATAATCTAGAATATACTGAAATAATCTTTGTTGTTCCTGTCATCTCAGATGATTTTCGGATATTCTGTGGAGATCTGGGGAATGAGGTGAATGATGACATTCTGGCAAGAGCGTTCAGCCGGTATCCGTCCTTCCTGAAGGCGAAGGTTGTT[C/T]GAGACAAACGCACTGGGAAAACGAAGGGTTACGGCTTCGTCAGTTTTAAAGATCCCAATGATTATGTGCGCGCCATGAGAGAAATGAACGGTGAGTTAATGAAGATTTTTACATTATCAGAAACAAACAAAATATACATTTTACATTATAAATATTTCACTTTTTCTGCATTTTATATTTGAAGTAATGCATTTATTCAGCACATTAAAGTCATCAAAAGTGCTTGTGAAAATATTTTCACATTTTTTATTTCTTATTATCTATTACTATCATTACTTTATTATCTATCATTATCTATTACTATCACTTTTAACAATTTTAAGTTTGTCAAAAAATATATACATTAAGCTGCATAAATGTTTTGATAAAGGGTCATGTCATGCTGAAGACTAGAGTAATGACAGCTTTGATATCACAAAATGTGATATTTAAAATGCATCGAAATATATTGCAGATTTTGAAAAGTGTGATGATATTTTATAGTTACCCTTTTTGATCAT
Associated Phenotype:
Not determined