ZMP
bcan
Ensembl ID:
ZFIN ID:
Description:
brevican core protein [Source:RefSeq peptide;Acc:NP_001077282]
Human Orthologue:
BCAN
Human Description:
brevican [Source:HGNC Symbol;Acc:23059]
Mouse Orthologue:
Bcan
Mouse Description:
brevican Gene [Source:MGI Symbol;Acc:MGI:1096385]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa1944 | Essential Splice Site, Splice Site | Available for shipment | Available now |
| sa10253 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa1944
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Essential Splice Site, Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000047499 | Splice Site | None | 1300 | None | 14 |
| ENSDART00000130700 | Essential Splice Site | 103 | 191 | 2 | 5 |
Genomic Location (Zv9):
Chromosome 16 (position 31553374)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 29390563 |
| GRCz11 | 16 | 29325186 |
KASP Assay ID:
554-1932.1 (used for ordering genotyping assays)
KASP Sequence:
ACGAYGAACTCTATGACGTATATTGCTATGTGGAGAACATTCATGGTAAA[C/T]AATTAGCTGCTAATNNNGTTACGCTTGAAAAACAGTACTCTTGACTGTACGCC
Long Flanking Sequence:
CAAAAGTCCATTATGTTGTCCAACAGCTGCAATATTTGTCAAACTGTGTAGAGAGTTGTTTATCCAGGTGCTGATATTAGTTAAATATCTCACGACTATCAGCCAATCAGATTCGAGGACGCGACTGAATTGTTGTATAAATACATATGTACGCATGTGTAAAACTAATAGGGCTTAATAAAGACATGGCTATGTTAATTTGTAGATCATCTAGCAACATTTAGTAACTTTTTATGTAGGAATTCGCTACTATTTATTAAAGCCATTTGGCAACATTATGTACATCAACATTAGCAACTGATTTGTAACAAAATATGTTTTGAAGCTTTTGTTGTTAATAAAAAGATATTATGTTATGGAGTTTTAGATACCCGATCCAGATGCCTCGGGAAGGGTGTTTTGGAGATATGGATGGATTACCAGGCGTTCGTAACTACGGCACGATGGAGAACGATGAACTCTATGACGTATATTGCTATGTGGAGAACATTCATGGTAAA[C/T]AATTAGCTGCTAATGTTACGCTTGAAAAACAGTACTCTTGACTGTACGCCAAAACTAGCATTTCATATTTGTATTAGATTATTTTCAGAGAATGCAGGGTGCAGTGTGATTGTCAGTTTTTCCAAAGCAAGAAAGGTTTGTTCATTTATTGATGTGACTGTTTTTAGGGGAGGTTTTTCATGGCTCAACCCCGCAGCGCTTCAGCTTGTCAGAGGCAAAGGCGTACTGTGAGCAGCAGGACGCTCAGCTCGCTACCACAGGTCAGCTGTACGCTGCCTGGAATGATGGTCTGAACCACTGCAGTCCTGGCTGGCTCGCTGACGGAAGCGTTCGCTACCCCATCGTGACCCCCCGTGAACGCTGTGGGGGCTCTGAACCTGGCGTCAAGACCGTCTATCGGTTTAGCAATCAAACAGGATTCCCTGAACCAAACACTCGCCATGATGCTTACTGCTTCAAAGGTATTTACAGATTTGAGTTTTATCTGCAAATGTATAAAC
Associated Phenotype:
Normal
| Stage | Entity | Quality | Tag |
|---|---|---|---|
| Larval:Day 5 ZFS:0000037 |
whole organism ZFA:0001094 |
quality PATO:0000001 |
normal PATO:0000461 |
Mutation Details
Allele Name:
sa10253
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000047499 | None | None | 1300 | None | 14 |
| ENSDART00000130700 | Nonsense | 107 | 191 | 3 | 5 |
Genomic Location (Zv9):
Chromosome 16 (position 31553287)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 29390476 |
| GRCz11 | 16 | 29325099 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTWGACTGTACGCCAAAACTAGCATTTCAWATTTGWATTAGATTATTTWC[A/T]GAGAATGCAGGGTGCAGTNWGATTGTCAGTTTTTCCAAAGCAAGAAAGGT
Long Flanking Sequence:
TCTCACGACTATCAGCCAATCAGATTCGAGGACGCGACTGAATTGTTGTATAAATACATATGTACGCATGTGTAAAACTAATAGGGCTTAATAAAGACATGGCTATGTTAATTTGTAGATCATCTAGCAACATTTAGTAACTTTTTATGTAGGAATTCGCTACTATTTATTAAAGCCATTTGGCAACATTATGTACATCAACATTAGCAACTGATTTGTAACAAAATATGTTTTGAAGCTTTTGTTGTTAATAAAAAGATATTATGTTATGGAGTTTTAGATACCCGATCCAGATGCCTCGGGAAGGGTGTTTTGGAGATATGGATGGATTACCAGGCGTTCGTAACTACGGCACGATGGAGAACGATGAACTCTATGACGTATATTGCTATGTGGAGAACATTCATGGTAAACAATTAGCTGCTAATGTTACGCTTGAAAAACAGTACTCTTGACTGTACGCCAAAACTAGCATTTCATATTTGTATTAGATTATTTTC[A/T]GAGAATGCAGGGTGCAGTGTGATTGTCAGTTTTTCCAAAGCAAGAAAGGTTTGTTCATTTATTGATGTGACTGTTTTTAGGGGAGGTTTTTCATGGCTCAACCCCGCAGCGCTTCAGCTTGTCAGAGGCAAAGGCGTACTGTGAGCAGCAGGACGCTCAGCTCGCTACCACAGGTCAGCTGTACGCTGCCTGGAATGATGGTCTGAACCACTGCAGTCCTGGCTGGCTCGCTGACGGAAGCGTTCGCTACCCCATCGTGACCCCCCGTGAACGCTGTGGGGGCTCTGAACCTGGCGTCAAGACCGTCTATCGGTTTAGCAATCAAACAGGATTCCCTGAACCAAACACTCGCCATGATGCTTACTGCTTCAAAGGTATTTACAGATTTGAGTTTTATCTGCAAATGTATAAACTGTATAACACAGGATTCAAACTGTGGGGTTCAAAGGGTGTGGTGCTAGGTCTACAATAAATTAAAATAAAGCTGTATTTTATACATA
Associated Phenotype:
Not determined