ZMP
pcdh19
Ensembl ID:
ZFIN ID:
Description:
protocadherin 19 [Source:RefSeq peptide;Acc:NP_001120991]
Human Orthologue:
PCDH19
Human Description:
protocadherin 19 [Source:HGNC Symbol;Acc:14270]
Mouse Orthologue:
Pcdh19
Mouse Description:
protocadherin 19 Gene [Source:MGI Symbol;Acc:MGI:2685563]
Alleles
There are 8 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa35743 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa22531 | Nonsense | Available for shipment | Available now |
| sa30984 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa35742 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa22530 | Essential Splice Site | Available for shipment | Available now |
| sa12445 | Nonsense | Available for shipment | Available now |
| sa952 | Nonsense | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa35743
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000125788 | Nonsense | 314 | 1088 | 1 | 5 |
Genomic Location (Zv9):
Chromosome 14 (position 41692684)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 14 | 40020762 |
| GRCz11 | 14 | 40388760 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTGTAATCACAGTGAACGGCGTTTTGGACCACGAGGAACTGCACATTCAC[G/T]AAATTGACGTACAAGCCAAAGATCTGGGTCCAAATTCAATCCCTGCCCAC
Long Flanking Sequence:
CCAGATTTCCCCTAGAGGGGGCAAGCGATCCGGACTCGGGGAGCAACGGCATTCAAACGTACACCATCACCCCGAATGATATTTTCGGTCTTGAGATTAAGACGAGGGGAGACGGGTCCAAAATCGCAGAACTTGTCGTGGAAAAGACTTTAGACAGAGAAACGCAGTCTCGGTACACGTTTGAACTCACGGCGGAGGACGGAGGAGACCCTCCGAAGTCTGGGACTGTGCAACTTAACATCAAAGTCATCGACTCCAACGACAACAACCCCGTTTTCGATGAGCCAGTGTACACTGTAAACGTGCTGGAGAATTCTCCCATTAACACGTTAGTCATAGACCTGAACGCCACTGACCCAGACGAAGGAACCAATGGCGAGGTGGTCTACTCATTCATAAACTTTGTCTCCAACCTGACCAAACAGATGTTTAAAATCGACCCCAAAACAGGTGTAATCACAGTGAACGGCGTTTTGGACCACGAGGAACTGCACATTCAC[G/T]AAATTGACGTACAAGCCAAAGATCTGGGTCCAAATTCAATCCCTGCCCACTGCAAAGTGATTGTTAACGTAATCGACATAAACGACAACGCGCCCGAAATCAAACTGTTGTCGGAGAACAGCGAGATGGTAGAGGTGAGCGAAAACGCTCCTCTCGGATACGTGATAGCACTGGTGCGAGTCTCAGACAACGATTCCGGAGCGAATGGGAAAGTGCAGTGCAGACTGCAGGGCAATGTGCCTTTTAGACTCAATGAGTTCGAGAGCTTCTCCACCTTACTTGTTGACGGCCGTCTGGATAGAGAGCAGAGAGACATGTACAATTTGACCATTCTGGCCGAGGACAGCGGGTATCCCCCGCTCAGAAGCTCGAAATCGTTTGCGGTGAAAGTAACAGATGAAAACGACAATCCCCCGTACTTCACCAAGCCCCATTATCAAGCCATGGTGCTCGAAAATAACGTCCCAGGTGCGTTTCTTCTGGCGGTGTCCGCCAGAGAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa22531
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000125788 | Nonsense | 439 | 1088 | 1 | 5 |
Genomic Location (Zv9):
Chromosome 14 (position 41692308)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 14 | 40020386 |
| GRCz11 | 14 | 40388384 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GACCATTCTGGCCGAGGACAGCGGGTATCCCCCGCTCAGAAGCTCGAAAT[C/A]GTTTGCGGTGAAAGTAACAGATGAAAACGACAATCCCCCGTACTTCACCA
Long Flanking Sequence:
CGAGGTGGTCTACTCATTCATAAACTTTGTCTCCAACCTGACCAAACAGATGTTTAAAATCGACCCCAAAACAGGTGTAATCACAGTGAACGGCGTTTTGGACCACGAGGAACTGCACATTCACGAAATTGACGTACAAGCCAAAGATCTGGGTCCAAATTCAATCCCTGCCCACTGCAAAGTGATTGTTAACGTAATCGACATAAACGACAACGCGCCCGAAATCAAACTGTTGTCGGAGAACAGCGAGATGGTAGAGGTGAGCGAAAACGCTCCTCTCGGATACGTGATAGCACTGGTGCGAGTCTCAGACAACGATTCCGGAGCGAATGGGAAAGTGCAGTGCAGACTGCAGGGCAATGTGCCTTTTAGACTCAATGAGTTCGAGAGCTTCTCCACCTTACTTGTTGACGGCCGTCTGGATAGAGAGCAGAGAGACATGTACAATTTGACCATTCTGGCCGAGGACAGCGGGTATCCCCCGCTCAGAAGCTCGAAAT[C/A]GTTTGCGGTGAAAGTAACAGATGAAAACGACAATCCCCCGTACTTCACCAAGCCCCATTATCAAGCCATGGTGCTCGAAAATAACGTCCCAGGTGCGTTTCTTCTGGCGGTGTCCGCCAGAGACCCTGATCTGGGCATGAACGGCACCGTGTCGTACGAAATCATCAAATCGGAGGTGCGGGGCATGTCTGTGGAATCTTACGTGACCGTCAACTCAAACGGCGAAATATACGGCGTCAGGGCTTTTAATCACGAAGATACGCGGACATTTGAGTTTAAAGTGTCTGCGAAGGATGGGGGAGATCCACCTTTGACCAGCAACGCCACCGTGCGCATCGTCGTGCTGGATGTAAACGACAACACACCTGTGATGACCACCCCGCCCCTGGTGAACGGCACCGCGGAGGTGTCCATCCCTAAAAACGCTGGAGTTGGTTATTTGGTTACACAAATAAAAGCTGATGATTACGATGAGGGTGAAAATGGGAGGTTAACATATT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa30984
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000125788 | Nonsense | 459 | 1088 | 1 | 5 |
Genomic Location (Zv9):
Chromosome 14 (position 41692247)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 14 | 40020325 |
| GRCz11 | 14 | 40388323 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAAGTAACAGATGAAAACGACAATCCCCCGTACTTCACCAAGCCCCATTA[T/A]CAAGCCATGGTGCTCGAAAATAACGTCCCAGGTGCGTTTCTTCTGGCGGT
Long Flanking Sequence:
GACCCCAAAACAGGTGTAATCACAGTGAACGGCGTTTTGGACCACGAGGAACTGCACATTCACGAAATTGACGTACAAGCCAAAGATCTGGGTCCAAATTCAATCCCTGCCCACTGCAAAGTGATTGTTAACGTAATCGACATAAACGACAACGCGCCCGAAATCAAACTGTTGTCGGAGAACAGCGAGATGGTAGAGGTGAGCGAAAACGCTCCTCTCGGATACGTGATAGCACTGGTGCGAGTCTCAGACAACGATTCCGGAGCGAATGGGAAAGTGCAGTGCAGACTGCAGGGCAATGTGCCTTTTAGACTCAATGAGTTCGAGAGCTTCTCCACCTTACTTGTTGACGGCCGTCTGGATAGAGAGCAGAGAGACATGTACAATTTGACCATTCTGGCCGAGGACAGCGGGTATCCCCCGCTCAGAAGCTCGAAATCGTTTGCGGTGAAAGTAACAGATGAAAACGACAATCCCCCGTACTTCACCAAGCCCCATTA[T/A]CAAGCCATGGTGCTCGAAAATAACGTCCCAGGTGCGTTTCTTCTGGCGGTGTCCGCCAGAGACCCTGATCTGGGCATGAACGGCACCGTGTCGTACGAAATCATCAAATCGGAGGTGCGGGGCATGTCTGTGGAATCTTACGTGACCGTCAACTCAAACGGCGAAATATACGGCGTCAGGGCTTTTAATCACGAAGATACGCGGACATTTGAGTTTAAAGTGTCTGCGAAGGATGGGGGAGATCCACCTTTGACCAGCAACGCCACCGTGCGCATCGTCGTGCTGGATGTAAACGACAACACACCTGTGATGACCACCCCGCCCCTGGTGAACGGCACCGCGGAGGTGTCCATCCCTAAAAACGCTGGAGTTGGTTATTTGGTTACACAAATAAAAGCTGATGATTACGATGAGGGTGAAAATGGGAGGTTAACATATTCAATATCAGAAGGAGACATGGCATACTTTGAAATAGACCAGATAAACGGCGAGGTGCGAAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa35742
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000125788 | Essential Splice Site | 716 | 1088 | 1 | 5 |
Genomic Location (Zv9):
Chromosome 14 (position 41691476)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 14 | 40019554 |
| GRCz11 | 14 | 40387552 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTGTCAAGTGCAAAAGGGATAACAAGGAAATCAGAACCTACAACTGCAG[G/A]TACCCAGACAATTTATATACCTCTTTTTAGCCTAGTTCAGCGTGCGAATT
Long Flanking Sequence:
CGCATCGTCGTGCTGGATGTAAACGACAACACACCTGTGATGACCACCCCGCCCCTGGTGAACGGCACCGCGGAGGTGTCCATCCCTAAAAACGCTGGAGTTGGTTATTTGGTTACACAAATAAAAGCTGATGATTACGATGAGGGTGAAAATGGGAGGTTAACATATTCAATATCAGAAGGAGACATGGCATACTTTGAAATAGACCAGATAAACGGCGAGGTGCGAACCACAAAGACGTTTGGGGAGAACGCGAAGCCATCCTATCAAATCACCGTGGTGGCGCACGACCACGGCCAAACTTCTCTGTCTGCCTCTGCATATATTGTCATTTATCTCTCACCTGATCTCAATGCACAGGAACAAATCGGACCAGTCAACCTGTCCCTCATCTTCATCATTGCCTTGGGCTCTATTGCAGTCATCCTGTTTGTCACGATGATATTTGTGGCTGTCAAGTGCAAAAGGGATAACAAGGAAATCAGAACCTACAACTGCAG[G/A]TACCCAGACAATTTATATACCTCTTTTTAGCCTAGTTCAGCGTGCGAATTACTCAATGACCTTCAGGGGGGTCGAATATTTGAAGGTAATCATAAAAAGAAATCAAATCAATAAAAGGCCCAACTATAAAATCCAGAATAAACACGAACAGCAACTGCTTCACCTGAGGTGTAACCATGGCAACAGTACGTTACTCGAGGTCTTTCCGTTATGACCAATATTGAATATTGACTAACATAAATAAGCATACGGTTTGTTTCGTAACATTTAATATTCGTAACTTTATTATAGATTATTTATATATCACAGGTAGGCCAATGAGCAACAAAAACAGAAGGCCTATTTATTCCAAAACAGTGCTAGGGGCGCCAAAGAACAACTATGATAGCGAGACTATGTAAAAGCCTAACGTTTCTTCCCAATTTGAAAGAAATATATATGCAGTTGAAGTCAGATTTATTAGCTCCACTATGATTTTTTTTCTCTTTTAAATATTTCAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa22530
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000125788 | Essential Splice Site | 845 | 1088 | 3 | 5 |
Genomic Location (Zv9):
Chromosome 14 (position 41648251)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 14 | 39976329 |
| GRCz11 | 14 | 40344327 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TATTCCATTGACTCCAGTTATGTAAACAGCAGAGCACACCTAATTAAAAG[G/A]TACGTCTTAATAGACCAATCAGATTAACTTATCTTATTCAACTTGATGCA
Long Flanking Sequence:
ATATTTTTTTTCACATTAGCATCCTCAAAAGTGTTTTGAGGAAAAGCAGCACTCGGAAGAGAAGAAACTTTCTTCTTAAAGCCCCAACCCCCTCCTCTATTCCCCTGTCTGGCTTAATGACATTTTGAAGAGCGTGGTCTGACTAAGGATGGTTTTGTGGGTTGGGGTGGGGTGTTGGGGGGGAGGCTGGAGGAGTGACGACAGGAGCAGACTCACTGCAGCAGAACAGGCCACATGTGCTTAGAAAGAGAATGGGGGAGTTTGCCTTTGAAAAGCCCAGGCAGCTAACTAGAGTCTTTGTGTAAAATAACATTTCTATTGAAAGGCAATTACTAGTGACATTATTTTGGTTGCTGCATAATTAAATTCATTTTTGTTCTCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTTTAATTCTGTCTCTTTCCCCTAGACGGAGAATTATTCCATTGACTCCAGTTATGTAAACAGCAGAGCACACCTAATTAAAAG[G/A]TACGTCTTAATAGACCAATCAGATTAACTTATCTTATTCAACTTGATGCATTCTTAAAGCAGTCTTCATTTCTTGTTTTGTTTATTTTAAGTGGTGTATTATTCTGTATTTGCATGTAATATAAGTAATATACACTACCTGATAAAAGTCTTGTCTCCTATCCAAGTTTTAGGAACAACAAATAATAACTTGACTTCTAGTTGATCATTTGGTATTAGAAGTGGCTTATATGAAAGACAAAGGCCTCTAGATTACGTTTATTTTACCAAAATAAAATATGATCATGCCTTGATTTTTAATGATTTAATTAGGACAGTAAGGTCTTGTCACTGAACAGAAATAATATCCAGTATAGAATATAAAGCCATGGTGCAGTGAAAAGAGATTTAATATTGTGTATGACTCCCATGAGCATCAATATATCTCCGAAATGACTTAACTTTGTCATCTGGAATGGCAAAGAAAGGGTTCCTGCAGAACTTCCAGAGATTATCAAGATT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa12445
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000125788 | Nonsense | 857 | 1088 | 4 | 5 |
Genomic Location (Zv9):
Chromosome 14 (position 41643361)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 14 | 39971439 |
| GRCz11 | 14 | 40339437 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTCACCTGGCTGTAGCACGTCAAYATTCAAGGACATGGAAGGAARCAGTT[T/A]GAAGGACAGCGGGCACGAAGAGAGCGACCAAACAGACAGTGAACATGACG
Long Flanking Sequence:
TCACATTCATTGTTAAAGATTCAATGAAACAATATTTCTTAACATTCACCTTTTGTTTTACGCAGAAGAGAGAAAAAAGTTGCTTTTTAATCTGAGCATAGCATAATTGTAATGTTCAGACCGACGACAGAGTTTCATTTTTAGATCCACTCTTCATTACATGTCTGCACTCAATAGATACAAAGGACATATTTCTGAAATAGCCTATAGAAAATGTAGGAACACAGAAAGCGACCTATAAAAGCTCTGCCCAGCGAAAGTCAGTACAGGCCATTGACTCCTGATCCTTTACCCTGACCATATCAGAATGTGAGAAAAGCTGCTTCTTTTCAGCTTCACCACCTGGGTGGCTAGACAATAAGCAGAGGTAGCATGAGGTGAAGAGACGGAAAGTGATGAAACCAAAGTTGACAGTTAAATAACCTTTTCTTTCTCTCTCCTCCTTTCTCCTTCACCTGGCTGTAGCACGTCAACATTCAAGGACATGGAAGGAAACAGTT[T/A]GAAGGACAGCGGGCACGAAGAGAGCGACCAAACAGACAGTGAACATGACGTCCAGAGAGGGCACTATGCTGATACAGCTGTCAACGATGTCCTGAATATGACCGTACCCTCAAACAACTCACAGATACCTGACCAAGGTAAGACACAAAGGTCTTGACTAGCTGAGAGCATCCATAAAAAAAAAGTTAAGAGTGGCTTTCTAGAAAGATTCAGCCTTGAGGCGCCTTGCTAATGCACAGGCAGCACTTCTCTTCCTGCCGTGTCTTTGATACCAGCCCATGAACATTATTGACGGATGTGAGCCACGTCGACTGCAACACTTCAGATCCAGACCTAAATGGCAGCAATTAGGCCGACAAAGGTTGGAGGTGGAAATCTACATATCACGCAGTCTCCTCATACATAATTCATTTAGCAGGGAATTAACGTTGATGTTTCTTTTTTACCTTCGCTGCCGTTAAAGACATCCGGTATGTTGGCAGGAGTCAGTAGGAGGTCAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa952
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000125788 | Nonsense | 1070 | 1088 | 5 | 5 |
Genomic Location (Zv9):
Chromosome 14 (position 41609162)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 14 | 39937240 |
| GRCz11 | 14 | 40305238 |
KASP Assay ID:
554-0857.1 (used for ordering genotyping assays)
KASP Sequence:
CGGAGGGGAAGGACAGTGAGCCGGCCATGCGGGAGATCAACACGCTCCTA[C/T]AGGACGGYCGTGATAAAGAGTCCCCCGGCAGCAAGAGACTGAAGGACATC
Long Flanking Sequence:
ATCAGTCGGAGGGTTTCCACTGCCAAGATGAATGCCGTATCTTGGGCCACTCGGACCGTTGCTGGATGCCCCGGGTACCGATACCGGCGAGAGCTAAGTCTCCGGAACACGGACGCAATGTCATCGCCCTGTCCATTGAGGCCACCACAGTGGACGTACCTCACTATGAGGACTGTGGCACCACCAAAAGGACTTTTGCCACCTTTGGCAAAGACGGGCCGGATGAGGACCGGGCCGAGCAAAGGGGCAGGCGGCAAACAGCGGAGCCAGCCGTCTGCAGCCCCAAGACCAACGGCGCTGTGCGCGAGGCCGGAAACGGCAGAGAGGCCGTCAGCCCCATCACCTCCCCCGTGCACCTGAAAAGCCCCCAATCCAAAGCATCTTCCACCTACAACACACTGAAATGCCGTGACGCAGAGCGCATAGCCAATCACAGCCTGCTGCGGCAGCCGGAGGGGAAGGACAGTGAGCCGGCCATGCGGGAGATCAACACGCTCCTA[C/T]AGGACGGCCGTGATAAAGAGTCCCCCGGCAGCAAGAGACTGAAGGACATCGTGCTTTAACCAGCTCCACCCGTACACAGAGCGCATACACTGCTACCAGTGTGTGTCGACATGCGTGTGTGTGTATTTGTGTGCTTTAGCGAGCGTCAAGTCCTGGGGAAAGAAGGGAGACGTGTGCAGCACGACGTATTCTCCAGAGGCTGAAAAGGTGTCTGCGAGCTCAGACTGTCATCGTGGCTTGGTAGTAACAGCAGCGCTTGTACGTTCGTCGCAATCGTCTCTCCGCAGTGGACAGGCTGGTTCCCTGCCCTCACATCGTACCCTTACGGGAGAAAGACACCCGAGTACAGTCATGCCTTGTAGACTCGAAAGAGACATCTTACTTTCTTCTAATGCCTTCTTTGGTATGCAGTTTCTGCTTCAGCTGCCAAACCGCTCACTGTTCCTGTAGAGGACGTGGGTCTCTGCGATGCTACAGATTAGCAAGACTCCTCTTGTCCG
Associated Phenotype:
Not determined