ZMP

zgc:193751

Ensembl ID:

ENSDARG00000078190

ZFIN IDs:

ZDB-GENE-050610-3, ZDB-GENE-080724-4

Description:

hypothetical protein LOC100170818 [Source:RefSeq peptide;Acc:NP_001124125]

Human Orthologues:

PCDHB1, PCDHG@, PCDHGA1, PCDHGA10, PCDHGA11, PCDHGA12, PCDHGA3, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8

Human Descriptions:

protocadherin beta 1 [Source:HGNC Symbol;Acc:8680]
protocadherin gamma cluster [Source:HGNC Symbol;Acc:8695]
protocadherin gamma subfamily A, 1 [Source:HGNC Symbol;Acc:8696]
protocadherin gamma subfamily A, 10 [Source:HGNC Symbol;Acc:8697]
protocadherin gamma subfamily A, 11 [Source:HGNC Symbol;Acc:8698]
protocadherin gamma subfamily A, 12 [Source:HGNC Symbol;Acc:8699]
protocadherin gamma subfamily A, 3 [Source:HGNC Symbol;Acc:8701]
protocadherin gamma subfamily A, 5 [Source:HGNC Symbol;Acc:8703]
protocadherin gamma subfamily A, 6 [Source:HGNC Symbol;Acc:8704]
protocadherin gamma subfamily A, 7 [Source:HGNC Symbol;Acc:8705]
protocadherin gamma subfamily A, 8 [Source:HGNC Symbol;Acc:8706]

Mouse Orthologue:

Pcdhb1

Mouse Description:

protocadherin beta 1 Gene [Source:MGI Symbol;Acc:MGI:2136730]

Alleles

There is 1 allele of this gene:

Allele Name	Consequence	Status	Availability
sa14087	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa14087

Status:

Available for shipment
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Availability:

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Mutation:

T > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000112958	Nonsense	190	802	1	1

Genomic Location (Zv9):

Chromosome 14 (position 2920444)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	14	2113461
GRCz11	14	2031812

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

AATGAATATTTTATTTTATCCATGCAAGYAAATTCMTTTGAAGAAAAATA[T/A]GCTGAACTMGTTTTAAATAAGGAATTAGATCGMGAGMAGSAGAAAGAGGT

Long Flanking Sequence:

AGCGCTTATGGAGACGTGAGCTATTCTTTACCGGAGGAGATGAAACGCGGATCTGTGATTGGAAATATAGCGAAGGATCTCGGACTGGATGTGAACAGACTGTCATCTCGCAAGGCTCGCATTGATACTGAAGGTAATAGAAAACGATACTGTGACATTAATCTGAATACTGGAGAGCTGACCGTAGCGGAGAGAATCGACAGAGAGGGGCTTTGTGGGAAGAAATCGTCGTGCGTTTTGAATCAAGAGCTCGTGCTGGAAAATCCTTTAGAATTGCACCGGATCGGTCTTAGGGTTCAAGATATTAACGACAATAATCCATATTTTGGTAAAGACTTGATCAATTTGGAGATCAGTGAATCCGCCGTTAAGGGCAAACGCTTTTTACTTGAGGAAGCAAACGACGCTGATATTGGGCAGAATTCTATTCAAAGCTACTCTATTCAAAATAATGAATATTTTATTTTATCCATGCAAGCAAATTCCTTTGAAGAAAAATA[T/A]GCTGAACTCGTTTTAAATAAGGAATTAGATCGCGAGAAGGAGAAAGAGGTGACTTTAATTCTGACTGCGGTAGACGGCGGGACTCCACCGAGATCAGGTACTGTAGCCATACACGTCACTGTGCTGGATGCTAATGATAATGCTCCAGTCTTTAGTCAGGCCGTCTATAAAGTCAGTCTGCCTGAAAATTCCCCTGTAGACACTGTAGTGGTGACAGTGAGCGCTACTGATGCTGACGAGGGACAAAATGGAGAAGTGACGTATGAGTTTGGGCATATTATGGAAGATTACAAGCATTTGTTTAATCTTGATCGAAAGACAGGTGTCATTAGCATAAAAGGCCCAGTAGATTTTGAGGAAGAAGCCACATTTAGTTTGCGAATTATAGCTAAAGATGGATCAGGTCTAACATCTTACTCAAATGTTTTAATCAGTGTGAGTGACGTTAATGATAATTCGCCTATAATAATAGTAAAATCTCTGAATATTCCAATTCCTGA

Associated Phenotype:

Not determined