Busch Lab

ZMP

nid1a

Ensembl ID:
ENSDARG00000068710
ZFIN ID:
ZDB-GENE-050302-58
Description:
Novel protein similar to H.sapiens nidogen [Source:UniProtKB/TrEMBL;Acc:B8JKX1]
Human Orthologue:
NID1
Human Description:
nidogen 1 [Source:HGNC Symbol;Acc:7821]
Mouse Orthologue:
Nid1
Mouse Description:
nidogen 1 Gene [Source:MGI Symbol;Acc:MGI:97342]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa35599 Nonsense Mutation detected in F1 DNA Not yet available
sa45501 Nonsense Mutation detected in F1 DNA Not yet available
sa8991 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa15334 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa35599
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000099475 Nonsense 80 1269 2 29
ENSDART00000133308 None None 578 None 12
Genomic Location (Zv9):
Chromosome 13 (position 51106718)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 49817815
GRCz11 13 50131058
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCAATGGCTTTGTTGCTCTGGAGAAGCCGACAGGAGAATCGGAGTATCTG[G/T]AAAACATGCCGGCCAGTTTTAAAATGATCGCAGCTCTTCAAGGCGACCTG
Long Flanking Sequence:
ATCGGGCCAGTAACGATCCTGTCTACTGTCCCGAGCATCTCACACGCTGGCCCCGGGCCATCGGGCAGTCCTTATTGTTGAGCCCTGCACTGTAAAACACTTGTCTGCGCAAAAAATGTAGAAACGGTTTTGCTACTTTAATGAAAATTTTTATTTTAATGGCAAGGTTGACATTTTCATGGAATTGCTCATATATATATATATATAGAACTTATACACTCAGCACCACTCATCAATGTCAGTTCCAAAGCAGTGGGCCTATCAGAAGAGCTCAGCGTTCTGTTTCTGTTTACCATAGCAAGTTGGCGTGACTGATTTATTTGTCATTAACATAGCAGAGGAGTTTGTTTTTTTAAACACTGTAACTGACTGTAAACACTGACTTTTTAGACACAGAGATGCATGTGTGAATGACCCTTAGTTCTTCTTTATTTCACACTTAGATCAACACCAATGGCTTTGTTGCTCTGGAGAAGCCGACAGGAGAATCGGAGTATCTG[G/T]AAAACATGCCGGCCAGTTTTAAAATGATCGCAGCTCTTCAAGGCGACCTGGACACGAGTGACGGTGTAGGAAAGGTGTTTTTCCGGCAGGACTTTAGTACGGCTCTTCTGCAGCAGGCGGCCGATCACATTAATAGAGCTTTTCCTGAGGACGACCTGGTGAACCCCATCCATGCTCTAGTGGTTACGTGGCTCGATGTGGCTTCTCACAAGGCAGAGAGCAGAGGAGACGGTCTGGAGCACAGCATAAGAGTAAGATTTACATTTAGTAGTTTAGTCAATGGGGTATATGCACAGCTAGTGTGTTTTTTTTTCTTTAACAGCAACAATGTTGTAATGTAATTACAATATAACCGGTTAAACACACTTAAGCATTTATTTAGTTATTGAAGTGTCAAATAAGATGAAAAGCCGTTTAAACACGAGCACCATCATGAGCAGCAGGCTACTGCAGGAACTCTGAAAATGCTGTGGTAAAATAAATGTTCATATTTTAAAGAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa45501
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000099475 Nonsense 390 1269 10 29
ENSDART00000133308 None None 578 None 12
Genomic Location (Zv9):
Chromosome 13 (position 51096783)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 49807880
GRCz11 13 50121123
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTGTTCTTGTTTTAACAGTATTTACATACAACTCTGGGCAGTGTGGTGGA[C/T]AAAAATGCTCCAAGTTTGCTGAATGCAGTGGACGTTGCTGCGTATGTAAA
Long Flanking Sequence:
ACTCTGTAGTATCAAGAGTATTGAGACTAGTTAGTATTGTGTGCCCCAAAAGTATCGATCTCAATACCCAGCCCTCCAAACATTAAAGACAGGGGTGTCCAAACTCAGTCTTGGAAGGTCAGTGTCCTAGAGAGATTAGCTCCAACCCTAATCAAACACACCTAAAGCAGCAGATCAAGCTCTTACTAGACATACTAGAATCTTTCTGGCAGGTGTGTTGAAGCAAGTTGGAGCTAAACTCAGTAGGACACCGGCCCTCAAGAACAGAGTTTGCACATCCCTGATTTAGGATAATGGAAATACACAAGTCAGCAAATATATATTACATTGTTTTTGTGTTGTTTGGATGTTTAAATGAAAAAAATCTTCTTTATTGTGTCTAACATGAAATAAATTTTTTTTTGGGTGATCTGTCCCTTTAACTCTGATTTTCTTGAGCCAAAATGACTGTTGTTCTTGTTTTAACAGTATTTACATACAACTCTGGGCAGTGTGGTGGA[C/T]AAAAATGCTCCAAGTTTGCTGAATGCAGTGGACGTTGCTGCGTATGTAAACCTGGATACTACGGCAGCGGTGTTCACTGTGTGCCTGAAGGTAAGGAGTTCAGTTATTTTGGATTTCATTTCCATTTATAGAAAGGTTTTTGTATAAGTTATGATTGTAATAAAGTTTACGGCCATTTGGCCGCCGGGAAAAAGGAGGCGGAGAACCGACGTAGTTTAAAATATTTATTTATAATATGAACAGCAGCTCCTCACGGAGACTGCCGTCTAAACCAAAACAAACGTACGGCAGCTCCTCACGGAGACTGCCAACAAGCTGAAAACAAAAGGAAAATATGTCCGGGCCCGGTCCTCTCTCAGCTTCCTCTGCCATCGTTCCTCCTTTTATTGTCCAGAGCTCCTTCCGTGGGATCCGAGGCAGGTGCGCACCGCAGGTGTATTCACTTACGCGGTGGCCTCACTCCGTTCCCACGGCTCTCTGCCACGCCCCTTTGCCACAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa8991
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000099475 Essential Splice Site 645 1269 14 29
ENSDART00000133308 None None 578 None 12
Genomic Location (Zv9):
Chromosome 13 (position 51084004)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 49795101
GRCz11 13 50108344
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TCTCCTCTTTCAATGYGTCTCAGGATAAACCWATTAATATTTCTTYCACA[T/A]CMACAGGTGGACAAAGTGAAGAAAACGCCTGTTTTACTGGCAGACACGGC
Long Flanking Sequence:
TCAGGATATGTTTTACGCAGCGGATGCTCTTGCAGCTGCAACCAAGTATTGGAAAACACTAACACACATTCATTCATTCACGCACACTTATACACTACAGCCAACTTAGTTTATTAAAATCCCTTATAGCAGCGCATGTGTTTGGACTGTGGGGGAAACCGGAGCACCTGTAGGAAACCCATGCCAACACGGGGAGAACATGCAAACTCCACACAGAAATGCCAACTGACCCAGCTGGGACTTGAACCAGCAACCTTCTTGCTGTGAGGCGACGGCCGCCCATAAAAAGAGACATACAAGTATCAAATACAGTGACTTTAAATAAAAGTAGAAGAAACAATAGCGAAAAAACTGTTCAAAACAGATTAAAAATGGGCTTACAAGGAATGAAATGGAGTGATAAAGTGATGGCGTGGGGTTTTCAATGTAATTAAATGTATTTATTCTTATTCTCCTCTTTCAATGTGTCTCAGGATAAACCAATTAATATTTCTTCCACA[T/A]CCACAGGTGGACAAAGTGAAGAAAACGCCTGTTTTACTGGCAGACACGGCTGTGATACTAACGCTGTCTGCAAACCTGGACAAGGAAACCAGTTTACATGCGAATGCGCCGCAGGCTTTACCGGAGACGGACGTGCTTGCTACGGTACAAATTAAATCAAACCTCAGTCCATCATTTCAATTAAAACCATTTCCTATTTCATTTCCCTATTAAAACAGCCACTTCCTTCCGAAGGCAAATCTGTTTTTTTGTTCTTGAAAGTACAACTCTACTTCCTAAGGGGCCGTTTCTGAAGCAATCTTATAATCAGACGTCAAAATTGTCTCCATGTCTGCATAAATTATCCAGCAGACCTCTAAGGATGTGACCCATCCCTTGATGCCTTGAGGAAATTGCACAAAAACAGGACAGACTTTATCTTTAAAGCCGTAATTATGAGAACCGATGCTATCATTGGTAGGAAGTCTGAGGAAGTGTTTTGTTTATGATAGCATTAAAGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15334
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000099475 Essential Splice Site 784 1269 None 29
ENSDART00000133308 Essential Splice Site 137 578 3 12
Genomic Location (Zv9):
Chromosome 13 (position 51079356)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 49790453
GRCz11 13 50103696
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CATCTGCACCTGTGCACCGGGATTCATGGGAGATGGCAGACGCTGTCARG[G/A]TGGGTCAGACTWCRGAAAACTCATACTCCARTAAAAGTACCGTGACTTGC
Long Flanking Sequence:
GCGTAATGAATTACCAACTTATCCAGCATATGTTTCACGCAGTGGATGTCCTTCCAGCTGCAACCCATCTTTGGAAAACATCCATACACACTCATTTACACTCATACACTACGGACAATTTAGCCTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACTGGAACACCCGGAGGAAATCCGGGGAGAACATGCAAGCTACACACAGAAATGCCTGCTGACCTAGCTGAGGCTCGAACCATCGACGCACTACTTACTGCGCTACCACGTCACCCACATGTAAACATAGTCAATGTTATAATTGGAATTGAGAGTGTAATTGTTTGAGTTGTTGTGTTGCTCTGCAGAAGTGCACCGTCCTGTAGACCCGTGTCGGAGCGGCACTCATGACTGTGACGTCCCAGAGCGCGCTCGCTGCAGCTACACTGGAGGATCCTCATACATCTGCACCTGTGCACCGGGATTCATGGGAGATGGCAGACGCTGTCAGG[G/A]TGGGTCAGACTACGGAAAACTCATACTCCAGTAAAAGTACCGTGACTTGCCAATAAAACAGGGTCCCCGCGGGTCCTTAAAAAGTCTTGAAATGTCTTAAATAAAATTTTGGATTTTTAAGGTCTGAAAATGTCTTGAATTCTGTAATTTTCCATAAGGAGGTCTTAAATTTCATGTGGGATCTTAAATTTCACGTCCGACTCGTCTTTTTTATTTATTTTTTTCAACCGCTATTTGACCAGCGCAACATTAGGGGGCAGCACTTCGTGGGTGCAACCTGCATCATTCCATAGGTGACATATGAGTAAGTGATTGATGAATGCGTTGCGTTGATACTTCGCAACCACGGCATTTTGCGAAATCGCAAGCATGGGCAAATGTTTGTTTGATGACAATTGGTTGGAGGACGAAAAGTATCGGGGGTGGCTAAAGAAAACAGCCAGTAATCATGAAGGGAGGTGTGCTTTATCTAAAAAGACGATAAAACTTGGGACAATGGG
Associated Phenotype:
Not determined