ZMP

col9a1

Ensembl ID:

ENSDARG00000031483

ZFIN ID:

ZDB-GENE-040426-2410

Description:

collagen type IX alpha I [Source:RefSeq peptide;Acc:NP_998429]

Human Orthologue:

COL9A1

Human Description:

collagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:2217]

Mouse Orthologue:

Col9a1

Mouse Description:

collagen, type IX, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88465]

Alleles

There are 6 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa22364	Essential Splice Site	Available for shipment	Available now
sa12182	Essential Splice Site	Available for shipment	Available now

Mutation Details

Allele Name:

sa22364

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

A > T

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000045434	Essential Splice Site	207	546	13	24
ENSDART00000131508	Essential Splice Site	342	681	21	32

Genomic Location (Zv9):

Chromosome 13 (position 39701639)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	13	39015740
GRCz11	13	39141630

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

GATTTTGTGAGGTGGTAACCAATGGTATATACCATACTTCTTCCAATGAC[A/T]GGGTAACGCTGGACAACCAGGCCTTATTGGCACTATGGGATCTTCAGGCA

Long Flanking Sequence:

TCTTGCATGCAATCGTATACTGCTTTATATGACATCAAAAACAGCATATACCAGTGGTTCTCAAAGTGTGGTATGAATATGATGACCTCTGTCTTATATTTATTAGGTCTTGGTTCTAGGTTTTGATGAATAGGTTACAATTTGTTACTACTTCACATTTAAGTACAGAAGTTTTCTTTTTACTTTTTAAGAACAGTAGCCTACCATTTTTAATGAACTTTTAATTTAAATGTTGACATTTTATTTTTAATTTATTTCCTATGAGCACAGTACATTGTAAATGTTCAAACTGTTTATAATGTTTAAAGTTGCTAACAATTAAAAATATTATAAATAATAGAATTACTCTGCCTCCTTTTTGTAACTGTACAGAGCTGTAGCTTCTTAAATAGGCCTACTACGCTCATGTATTTCAGTACTGGTCATTATGGTGGTTCTTGGAGAGACAATGATTTTGTGAGGTGGTAACCAATGGTATATACCATACTTCTTCCAATGAC[A/T]GGGTAACGCTGGACAACCAGGCCTTATTGGCACTATGGGATCTTCAGGCAAACAAGTAAGTAAATGGTCTAAATCTTGACCATACATGTTCATGAACAGATGATTTGTAGTAAATAAATATCTCTATTCAGGGTGAACGTGGAGAACAAGGAGAACTCGGACCCATTGGGCCTATTGGACTAGCTGTAAGTCCTCAATACAGCATGACTAATGGCTAATGCACAGGTCGAAAGTGTCTATATTTACTCACCTAAGAGTATCTAGAAGGTAATGATGGTTTATTTGTGTTTAGGGAGACCGCGGAGAACAGGGACCCGTTGGACCGATGGGGAAACCAGGAGCCAGAGTATGTGCATAATCTGTATAATGAGATGGTTTCAGAATCAAAGCAAGCATCTGCTGTACTTTACTTTCATCATAGAAATTACTGAATGATGTGAAAAGCTTTGCCTGTAAGAGATGAGGGTCCTCGGGTCACCTTTTAAGGGCCAGCAAACATA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa12182

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

A > T

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000045434	Essential Splice Site	390	546	22	24
ENSDART00000131508	Essential Splice Site	525	681	30	32
ENSDART00000045434	Essential Splice Site	390	546	22	24
ENSDART00000131508	Essential Splice Site	525	681	30	32

Genomic Location (Zv9):

Chromosome 13 (position 39684695)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	13	38998796
GRCz11	13	39124686

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

ATAGCGGGGGAACATCVGCACTCATTAGTGCGTYTGCTCTTTGTGCTTTC[A/T]GAGCAGTTGGCACAGTTGGCTGCCAGTCTGAGGAGMCCAGAGTCTGGAGC

Long Flanking Sequence:

GAATGTTGTTCCGGGATCAACATGGATGTTACTCCAGGAACAGGTCCTACTAGGTGAAATCAGGTTGGCGGTGGTGTTAGATTTTACAGTTTACTGTATTTTTTATCATATAAATGCAGTCTTGGTTAGCAGAAAAAGCTCATATTCAAACATATATATATATATATATATATGGTATTTTTTACAAATACCAATGGCAATAGTTTTCACCAACAGTTTTCAGCAATAGCACAATAATAAAAAAAGCTCCGTCTCTAAGGTATACCTGTTTAATCCAAAATTTTACATTCAGTAATGGAAAGGTATTATGTGAGAACTAAAAGCAGGAATATGTGCATCAACCTAAAGGAGGCGCCGTAGCATTATTACAGAACGCCGTAAGTATGCAGTGCTAATTAGTGAAAGCAACATCAAAATCAGTGGAGAAATGAAATGAAAACTGTAGCGCTAATAGCGGGGGAACATCGGCACTCATTAGTGCGTTTGCTCTTTGTGCTTTC[A/T]GAGCAGTTGGCACAGTTGGCTGCCAGTCTGAGGAGACCAGAGTCTGGAGCAGTTGGACTACCAGGCAAACCTGGACCTCCGGGACCTCCCGGGCCCCAAGGTGACAGTGGTTTCCCGGGGCATGCAGGATCCAGAGGATTGCCGGGACTTAAAGGGCCTCCGGGACTGATGGGTGTCAAGGGGCCAAAAGGTCAGTCATTATGGGACATTATGATTCATTATGAGTTCAGGCTGCTGGTCCTGGAAGAGCAATATGTGATTTAATTGAGTATAGCATGGCCTATCAAATGGGGGATTAAAAACAGGGTAATAATTAAATCTAATTGCACAATTAATTGACAATAAAAAATGTGAGTAGTAATTATAAAAGTTCATATTATCATAAATATGCTACATTTTTGTGGATAGCATTTAATGGAATTTTATAAACCATTATTCCATCCGAATAAAAGCTTTAATGTTTGATAATTTGAGAGTGAATAATTAAATACATCACTATT

Associated Phenotype:

Not determined