Busch Lab

ZMP

sdk2b

Ensembl ID:
ENSDARG00000060452
ZFIN ID:
ZDB-GENE-030131-8203
Description:
Novel protein similar to vertebrate sidekick homolog family (Chicken) [Source:UniProtKB/TrEMBL;Acc:B
Human Orthologue:
SDK2
Human Description:
sidekick homolog 2 (chicken) [Source:HGNC Symbol;Acc:19308]
Mouse Orthologue:
Sdk2
Mouse Description:
sidekick homolog 2 (chicken) Gene [Source:MGI Symbol;Acc:MGI:2443847]

Alleles

There are 12 alleles of this gene:

Allele Name Consequence Status Availability
sa31893 Nonsense Available for shipment Available now
sa12667 Nonsense Available for shipment Available now
sa1344 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa31893
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000085121 Nonsense 367 2254 9 46
ENSDART00000140353 Nonsense 321 2035 8 44
Genomic Location (Zv9):
Chromosome 12 (position 39108379)
Other Location(s):
Assembly Chromosome Position
GRCz10 12 37395793
GRCz11 12 37570535
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTTCTCTTTTCCTTTTGATTTCAGGTGTTCCTCAGCCTGATATTGTGTG[G/A]TATAAAGATGCAGTTCCCATAAGCCCTGTGAAGACGCCGCGCTACAGAGT
Long Flanking Sequence:
TAATATATTAGTTAATGCTTTAGAACTAAATTAATTCTTAAATCATGTTTACCAACGATGGAAAACTTATAGAATAATCTTTAGTTCAACTTCTAAGTGTTTATTGTCATATGCACAGTAAGGAACAGGTTACCTGTACAAAATTCTTACTTTGCTATCCACACTGAATGCCCCCCACATTCTCACACAGTTCAAACGCTATACAGTAAGTGAATTGGGTAAACTAAATTGGCCATAATGTATGAGTGTGTGTGTGAATGTGAGAGTGTATGGGTGTTTCCCTAGTACAGGGTTGCAGCTGGAAGGGTATCCAGTGCGTAAAACATATGCCAAAATAGTTGGTGGCTCATTACACTGTGGCAACCCATGATAAATAAGGGACTAAGCCATAGGAAAATGAATGAATGAATGAAGGTACCATGATTACTCTAAACTATCATGTCATTCACATTTTCTCTTTTCCTTTTGATTTCAGGTGTTCCTCAGCCTGATATTGTGTG[G/A]TATAAAGATGCAGTTCCCATAAGCCCTGTGAAGACGCCGCGCTACAGAGTGTTGAGCGGCGGTAGCCTTCAGGTAAACGGCCTTCTGCCTGATGACACCGGGATGTTCCAGTGCTTCGCCCGAAACCAAGCTGGAGAGGTGCAGACCAACACCTACCTCGCAGTGACCAGTGAGTTCATCCACCCTTCCATCTCTTTCTCCTACTAATTTAAACATGGATATTGGATAAGAAGTGAAGTGTAAACAAATGACTATACTAATCATTAATGGTCAATACATTGTTAAACACAAAAGAGGATATTTAGAAAAATTATACTCGCTTGCACCCATTGACTTCCTTAGTATTTTTTCTTACTATGAAAGTCAATGGACGCCAGCAACCTTAAAAATACCTTCTTTTGTGTTCAGCAGAAGAAATAAACTCTTAAAACTTAAACACCACAGGAGAGAGAATAAATGATAAGGTCATTTTAATTTTTGGGTGAACCATCCCTTTTAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12667
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000085121 Nonsense 989 2254 21 46
ENSDART00000140353 Nonsense 943 2035 20 44
Genomic Location (Zv9):
Chromosome 12 (position 39073661)
Other Location(s):
Assembly Chromosome Position
GRCz10 12 37361075
GRCz11 12 37535817
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AACGTGACTCTGGAGTACCGAGYGACCGGACTGACGGCTCTCACCACATA[C/A]ACCATTGAGGTGGCAGCCATGACCTCTAAAGGCCAGGGTCAGCTGTCATC
Long Flanking Sequence:
ATTAGATAAAAAAAACTAACAGACAACATCCATTTTAACAACGCTAAAGAGAAAATAATAATACAAATAAAAATGCATAATACAAAATCTAATAATAATAAAATAATACAATAATAATAATGAATAAATAATAAAAAAGTATATATATTTATAAAAATAAAAAATTGATTAAAAAGAAAATGATAATGGATATTAAAATAATAATAAATACATAAATAAATAATAAAATAAAATAAAATAAAATAAAATAAAATAAATTCAATTGTGGCATCCCATTACTCAATATACTGCAGTGAAATTCAGATAAGGAGTCCAGATTTGATGAAAACTCTGAGTAGACATAAGAACAACCCATAGTAAACAGTTTTATCTCATGTTTGTTTTTTAGGTTATCGTATATCATGGGAGGAGTACAACCGCACTAACACACGAGTTACACACTATCTGCCCAACGTGACTCTGGAGTACCGAGTGACCGGACTGACGGCTCTCACCACATA[C/A]ACCATTGAGGTGGCAGCCATGACCTCTAAAGGCCAGGGTCAGCTGTCATCCTCAACCATCTCTTCAGGAGTACCACCAGGTACAGTAATCAGACACTTACAAACCTGTCCAAACAGGTAATGAAATCTACACTTTAAAGTTCCCGTGAAGAGCTTTGTAACGTGCACTTTTTTTCAATGTTGGACGTAATTTCAACTGAAACACAAAAAGAAGGTGGGACATCGAGTAGCTCCTCTTCTTTTCCAAAAACAGCCAATAGCATTTGGTTTGTCACAGTTTTGCCAGTGAGAGTGGTTGAGATCAAATTAAATGCAAATGAGAAGCGTTAAAGAGGACGGGCCATGTCAGATACTAGAGAGCATTTGATTGGTCAAGATTTGATGAAAAACTACAGTATGAGGTGGCATGAAAATTATCGTTGATCCATTTCAGTGGATGTGACAGAAATTTTAGGAGTTTATATCAGGATTATTTTTATCTTATTTATAAATTATAGATAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1344
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000085121 Essential Splice Site 1422 2254 29 46
ENSDART00000140353 Essential Splice Site 1375 2035 28 44
Genomic Location (Zv9):
Chromosome 12 (position 39058230)
Other Location(s):
Assembly Chromosome Position
GRCz10 12 37345644
GRCz11 12 37520386
KASP Assay ID:
554-1258.1 (used for ordering genotyping assays)
KASP Sequence:
GGGATGGGGAGAGGCGGCGGAAGCCTTAGTCGTCACTACCGAGAAGAGAG[G/A]TAATCTACATTATTATCACACATCAACAATGGGGAAAAACAAACTCAAAC
Long Flanking Sequence:
GTCACCAAAGCTTAAAACAACAGCATTTAATTACAATAGAAATATTTTGTTTCCTTGTGAATATCTTTACTGCCACTTTGAAATTAAAGTCTATTAAAAGAATAATAAAATCTGACCTCAAGCTAAAAACACATAATTGCTTCCATTCTTGAACAGTCCATTGTAAACAGAATCCCGTTTGTTTTGCTTTTGTTCATTAGAATGTGTTTCCTCTAATCAATGTGTTGCATGTCCCTGATGGCACGCAAGGAAAAGCACATATTGTCCTGTGCTGATGTCTATGATGTCATAATTTCCCTCTCCAGCCTATCAGATCACATACCGGCTGAACTCCACCAATAGCAACACGGCCACGTTTGACGTGTTGAACTCCAGCGCACGGCAGTATACTGTCACTGGACTGAGGCCGGAATCGGTGTATGTGTTTCGTATCAGAGCGCAGACACGCAAGGGATGGGGAGAGGCGGCGGAAGCCTTAGTCGTCACTACCGAGAAGAGAG[G/A]TAATCTACATTATTATCACACATCAACAATGGGGAAAAACAAACTCAAACTGAGCTTTACATCAGTGTGTCTGGTGTGATTAAGATAAATAAATAACTTAAAGTCAGATTTTGACTTTTTATAGATCTATTTTTGCACAATTCAGCAGTGGAATCAGTGGGGGGGCATAGTAGCTGGAGGTGGATTCACCCTGCTTTGACTGAACTCTTGGAATTTCTAGTTTATATGATCCTAATGATCTGAGTGATCTGTTAGGTTTGTATTCAGTGAGCATCTCTGTAATGTATTGAGTTCCTAGACCATTTAGTGATTTATAGACAAGTAATAAGCATGAAGACGTTTCTCTAAGTCTTCACTGGAGACAAAGATCTAATTTTTGCAATGTTTTTGAGATGATAGTACGCTGATTTACTTACTGCTTTGACATGACTACTGAAACTGAAACTGAAACTCAGATCTGACTCCAGAATCACACCAAGATTCTTGACCCTATTTATTGT
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461