ZMP
zgc:152845
Ensembl ID:
ZFIN IDs:
Description:
structural maintenance of chromosomes protein 5 [Source:RefSeq peptide;Acc:NP_001180470]
Human Orthologue:
SMC5
Human Description:
structural maintenance of chromosomes 5 [Source:HGNC Symbol;Acc:20465]
Mouse Orthologue:
Smc5
Mouse Description:
structural maintenance of chromosomes 5 Gene [Source:MGI Symbol;Acc:MGI:2385088]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa45399 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa34865 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa45399
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > G
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000065017 | Nonsense | 198 | 400 | 5 | 19 |
| ENSDART00000101191 | Nonsense | 198 | 697 | 5 | 16 |
| ENSDART00000122170 | Nonsense | 198 | 1073 | 5 | 24 |
| ENSDART00000138389 | Nonsense | 198 | 445 | 5 | 10 |
The following transcripts of ENSDARG00000044282 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 10 (position 15670894)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 10 | 15684201 |
| GRCz11 | 10 | 15642320 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGTGAACTTCTTGAAGCCACTGAGAAATCTGTCGGCCCACCAGAAATGTA[C/G]GAATTTCACTGTGAGCTCAAGACATTTCGCACCAAAGAGAGAGATTTAGA
Long Flanking Sequence:
TGAAGAGAGGGTGTCAAAGAGGCTCAGTTGAAATAGAGCTGTAAGTATGTGTTTTTACAACTTCAATTTCTACAAGTGTTCACAAGAGTTCCTCAGTTCATCTCTACTTTTATTTTTGTCCAGGTACAGGACACGTGGAAACCTGATAGTCACCAGAGAGATCCAGGTTGAGAACAATCAGTCGACATGGATGCTTAATAAAAAACACGCCAGTCAGAAGGCAGTGGAGGAGGCCGTAAGAGAGCTGCACATTCAGGTTGGGAACTTGTGTCAGTTCCTACCACAGGTAAGTGCTCTTATTATTATGAAGAGTTTACATACTTCACAATGTATATTACCAAACCTGTGTGTTAAGTTTGGAAGAACTGTACAAGAGCTCTATTTTTTACATGCTCTGCTCTTTATCTTGTGTCTTAGGAAAAAGTCGGTGAGTTTGCTAAAATGAGTAATAGTGAACTTCTTGAAGCCACTGAGAAATCTGTCGGCCCACCAGAAATGTA[C/G]GAATTTCACTGTGAGCTCAAGACATTTCGCACCAAAGAGAGAGATTTAGAGGTATTTTTATTTTTTTTATTGCGATCCTATATAACTCAGTCCTAAAGGGCCGGTGTCCTGCAAAGTTTAGCTCCAACTTTCTTCAACACACTTGCCTGGAAGTTGTAAGCTGCGTTCCAAATCGCATACGTATGCACTATTCTACGGCATTTTGTAGTATAAATAGTGTAAGTATTGGGTTCACACTGAAAACTCTAAAAAATAATAAGTGCACTTTAATTACCCGGACGATGCACTCATTTAGCTGGTAAAATGAAGTGTGTAATGATGGACACTTCACGCACTCAACGACCACAGGTTTGCTCACATAGCGGAAGGGGCGGAGCTATCAGCCGCACATGTTGGACAACTTTATTTATTTTGGATGGTGAAAGCAAAATTTTCTTACGAGAGTGATTATAACGCCTCCCGATGGTGAATGCGGTTATGCTCATGGCAGGTATTATCTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa34865
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000065017 | None | None | 400 | None | 19 |
| ENSDART00000101191 | None | None | 697 | None | 16 |
| ENSDART00000122170 | Nonsense | 572 | 1073 | 13 | 24 |
| ENSDART00000138389 | None | None | 445 | None | 10 |
The following transcripts of ENSDARG00000044282 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 10 (position 15663418)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 10 | 15676725 |
| GRCz11 | 10 | 15634844 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGCGAGAGATGTTTGATGCTCCTGAGGAGGTTATGAGTTATTTATGCCAT[C/T]AGTACAGAGTTAACGATGTACCAATAGGAACAGAGAAGACCAAGGGCATG
Long Flanking Sequence:
TTCAAAAGTTTTTAAAAATGTCTTCAAATAATTTTTGCATTTTGATGAGATTTTAATTTATATTATCTGCTGTAACAGAAAGCCATTTTAGTCTCCTCTAAGTCATGGTAAAAGCGTTGTTTTTTTTTTTTTAACTTTTGTTATTATTTTGCTTCTTGCAAAAACCCTTTTGTTATTGACTCGCATTAAAAAATGAAAAGTAAATTATGTAAAACGAGGCATGTTTTTTTTTTTATTTTTTTTTTTTTAGATGAGAGATACGCAGAGGCTGCGAGTTAACAGCATCATCGCTCCTACAGAGTCTTGCTCTAAACGACCACCGTCACGACCCATCGAGACCCTCAAGTAATGAGCATCATTAAATGTCTTTTTTTTTTACTACATTTAGAGTTTATGTGTTTAATGTTTTTTTTATTATTTTTTGCAGGCCTTACGGCTTCATCTCGTACTTGCGAGAGATGTTTGATGCTCCTGAGGAGGTTATGAGTTATTTATGCCAT[C/T]AGTACAGAGTTAACGATGTACCAATAGGAACAGAGAAGACCAAGGGCATGATTGAATCGGTTGGTTCTCCTTTGATAAAAAAGTGATGTATAGCTGAAAGCAGAGTAATATACTTTAAATTAATTCATTATGGTGGCGCAGAGGTGCCGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAGCCTCGGCTGGGTCAGTTGGCGTTTCTGAACGGAGTTTGCATGTTTTCCCTGCATTCGTGTGGGTTTCTTCCGGGTGCTCTGGTTTCCCCCACAGTCCAAAGACACAGGGGTGATAGCGTTCCGGCACCACGCCGGATTTCCGGCGTACTGTGGCTGCGGGGAAAAAAAAATCAGGTTCACGGATATTGATCTGTCATTTCTCTAGATTCACAGAATTCACTCACTGCTACTGATTAATTGTGTAATTTAGAGAGCTTTATAAATTTTAACAGATCTTTGTGAGATCTCTATGAACTAAGATTAGTGA
Associated Phenotype:
Not determined