ZMP
smarcal1
Ensembl ID:
ZFIN ID:
Description:
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
Human Orthologue:
SMARCAL1
Human Description:
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Sour
Mouse Orthologue:
Smarcal1
Mouse Description:
SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 Gene [
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa34775 | Essential Splice Site | Available for shipment | Available now |
| sa34776 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa34775
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000038508 | None | None | 587 | None | 25 |
| ENSDART00000112984 | Essential Splice Site | 348 | 522 | 6 | 10 |
| ENSDART00000122786 | Essential Splice Site | 251 | 699 | 6 | 18 |
| ENSDART00000127514 | None | None | 250 | None | 13 |
| ENSDART00000136437 | None | None | 269 | None | 4 |
Genomic Location (Zv9):
Chromosome 9 (position 53954612)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 9 | 52938824 |
| GRCz11 | 9 | 52479727 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GATCCACAACTCACACGCAGCCTCATGCCTTTCCAGAGAGACGGAGTCAA[G/A]TACGTTAACTTTAATTTATTGAACAAGTTTGACAAATCGAGATTGCAATC
Long Flanking Sequence:
CAAAATAGCGACGCGCCAGCGGTCCGCCTCAGAACGCCTTCCTTTTTAGACCAGAACGCCAATGGGCGCACAAATGAGCGCTAATGCATTTGCTATTTAAACAGCGTAGCACAACGCCTTAAAACTACTATTGCGCCAAGCTGAAACTACCAAAAGACTACTGCGTCACGCCTTGCGCCACACTGCGCCGGGTGTATGATTGGGCCTGATGTGTTCAATACTTATTTCCCCCGCTGGATTTGCGTAGAATTTAATATTTCCATGCATGTGGTTGATGATGATGATGATGATGGTGTGTGTGCGTGCGTGTGTGTAGTGGCGGATCTGAATGAACTGCCTACAGTGGAGACTGAGCCTTTACCTCACGCCGTCCTCCAGTCCTTCTCCAGTCAGTTTGAAAAAACCGAATCCCGAGCTCCAGTCCCTCCTGAAGCAGATCTCTCACACATCGATCCACAACTCACACGCAGCCTCATGCCTTTCCAGAGAGACGGAGTCAA[G/A]TACGTTAACTTTAATTTATTGAACAAGTTTGACAAATCGAGATTGCAATCTTTTTTTTAATTAATTGTGCAGCTCTACTGTACATACATTAGGATATAGGATATACTCCTTCCTCTCTTAAGCATGATAAATGTTTATACGTATTCACCACATCGAAAGTTTTAAAAAAGTTTTTTTTTTTTTTTGTCTTTTATTTTATTTTGCATAACCTCAATTTCTCCATAATTTAGATTCTATTGTTATTATTATTGTTTTATTTTGTTATTGTTACTATTTGAAGGTCACGAGTGGCTGTGTAAGCAGTTCAATGCATATCATACTGTGTATGTCACTGTATGTGACAAATACAACTTGAATTTGATTTGAAAGGTGGCTTTGGATAAAAGCTTCTGTCAGGCACATGAGTGTAAATGTAATGTTTGCTGATGCCTCAGTTTTGCAGTGTCCAGAGAGGGTCGTTTGCTCCTGGCTGATGATATGGGCCTCGGGAAGACGGTTCA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa34776
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000038508 | Essential Splice Site | 277 | 587 | 10 | 25 |
| ENSDART00000112984 | None | None | 522 | None | 10 |
| ENSDART00000122786 | None | None | 699 | None | 18 |
| ENSDART00000127514 | None | None | 250 | None | 13 |
| ENSDART00000136437 | None | None | 269 | None | 4 |
Genomic Location (Zv9):
Chromosome 9 (position 54003072)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 9 | 52938824 |
| GRCz11 | 9 | 52479727 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GATCCACAACTCACACGCAGCCTCATGCCTTTCCAGAGAGACGGAGTCAA[G/A]TACGTTAACTTTAATTTATTGAACAAGTTTGACAAATCGAGATTGCAATC
Long Flanking Sequence:
AGCGGTCCGCCTCAGAACGCCTTCCTTTGTAGACCAGAACGCCTATGGGCGCACAAATGAGCGCTAATGCATTTGCTATTTAAACAGCGTAGCGCAACGCCTCAAAACCACTCTTGCACCGAGCTGAAACTAGCAAAAGACTACTGCGCCGCGTCTTGCACCACACTGCGCCGGGTGTATGATAGGGCCTGATGTGTTCAATACTTATTTCCCCCGCTGGATTTGCGTAGAATTCAATATTTCCATGCATGTGGTTGATGATGATGATGATGATGATGATGATGGTGTGTGTGTGTGCGTGCGTGCGTGTGTGTAGTGGCGGATCTGAATGAACTGCCTACAGTGGAGACTGAGCCTTTACCTCACGCCGTCCTCCAGTCCTTCTCCAGTCAGTTTGAAAAAACCCAATCCCAAGCTCCAGTCCCTCCTGAAGCAGATCTCTCACACATCGATCCACAACTCACACGCAGCCTCATGCCTTTCCAGAGAGACGGAGTCAA[G/A]TACGTTAACTTTAATTTATTGAACAAGTTTGACAAATCGAGATTGCAATCTTTTTTCAATTAATTGTGCAGCTCTACTGTACATACATTAGGATATAGGATATACTCCTTCCTCTCTTAAGCACCAGGCACTTTGTTAGAAACACCTCCATCTTTCTGTTTGTACAGATAGCTCTTTTATAAATGTTTAAACGTATTCACCACATCGAAAGTCTTAAAGTTATATTTTCTATTATTTTATTTTGCATAACCTCAATTTCTCCATAATTTAGATTCTATTGTTATTATTATTATTTTATTTTGTCATTGCTGTTACTATTTGAAGGTCACGAGTGGTTTTGTAAGCAGTTTGCATATAATACTGTGTATGTCACTGTATGTGACAAATACAACTTGAATTTGATTTGAAATGTGGCTTTGGATAAAAGCTTCTGTCAGGCACATGAGTGTAAATGTAATGTTTGCTGATGCCTCAGTTTTGCAGTGTCCAGAGAGGGTCGT
Associated Phenotype:
Not determined