ZMP

si:ch211-260b17.6

Ensembl ID:

ENSDARG00000088402

ZFIN ID:

ZDB-GENE-070912-256

Human Orthologue:

C13orf18

Human Description:

chromosome 13 open reading frame 18 [Source:HGNC Symbol;Acc:20420]

Mouse Orthologue:

5031414D18Rik

Mouse Description:

RIKEN cDNA 5031414D18 gene Gene [Source:MGI Symbol;Acc:MGI:2685590]

Alleles

There are 3 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa34650	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa41423	Nonsense	Mutation detected in F1 DNA	Not yet available
sa34649	Nonsense	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa34650

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

G > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000122382	Essential Splice Site	61	277	2	7
ENSDART00000132160	None	None	249	None	2
ENSDART00000143479	Essential Splice Site	66	282	2	7

Genomic Location (Zv9):

Chromosome 9 (position 26120487)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	9	25276273
GRCz11	9	25087142

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CGCTTCTCAGCACTTCCTGTGTGCCGGTTGTGGTACTGAAATTGAGGCAA[G/A]TGAGTAATGAATCTGCTCCTAGTAAGAGTCCTGTAATTCAGAGATTTCAG

Long Flanking Sequence:

GCGTTGTTTTAAGATCATGGCTCATGGCCCTGGTGCAGTTTGAGACCAGTGGTGTTAATTACATTGTACAGTAAACTGCATTTCTTTTTCAATTGGGTATTCATATGAATATTTAGGTCACATTTTACAACGAGGTTTCATTATTAATGTATTTAGTAGTGTGAACTGAACAGTACTTGTTCAGCATAATCATCGTTCAACATTTATTAATGCATTATTAACATCTAAATTCATGCTAGTTAACATTTGTTAATGACCTGTGAGTTAACATGAATTCACAATGAACTGTATTTTCATTAACTATAACTAACATGAACAACTACTGTAATAAATATATTGTTCATTGTTTATTCATGTTCGTAAATATACATGAACTACCATTAATACAACCTTATTGTAAAGTGTTACCAATATTTATGCTTATCTCTTAATCAGACGCAGTGATGTTATCGCTTCTCAGCACTTCCTGTGTGCCGGTTGTGGTACTGAAATTGAGGCAA[G/A]TGAGTAATGAATCTGCTCCTAGTAAGAGTCCTGTAATTCAGAGATTTCAGTACTTTGAGGTTAAATCTCGACTGCTCCTCTTTCCTAAGGGTATATGAAGAAACTGAGGTATTGTGACTATCTGGGTAGATATTTTTGTGACGGCTGCCATGGTGGTCTGGAAACAGTGATTCCTGGTCGGGTTCTGAACAACTGGGACTTTGCTCGATATCCAGTCTGCAATTTCTCCAGACAGTTATTGGACTCTATATGGGAGCAACCAATTTTCAAACTCACAAGTGTGGCCAAGAACCTGTACAGCCAGGCTAAAGAGCTCCAGCGGTTCAGAGTGAGTATTGACTCTAAGATCCCAATTTTGATCAGAAGAACCTACAATACACTGTAAAAGAATATTTGTTCACTCAGCTTAATTCAAGTAAGTCATCTTGTTTCATTGAATCACTTAAGTTGCATCGACTTAATTCTCTAAGTTTTCTCAAATTAAAATGCTTAGTTAAATA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa41423

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000122382	Nonsense	267	277	7	7
ENSDART00000132160	None	None	249	None	2
ENSDART00000143479	Nonsense	272	282	7	7

Genomic Location (Zv9):

Chromosome 9 (position 26116540)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	9	25272326
GRCz11	9	25083195

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

ACATTTCATGTTTCCGCGATGAATCATGTCCCAAATGTGCCAGACTCCAG[A/T]AACGAAAGAAACTCCAAGAAGACATGAGTGTATGAGACATCCTACACGTG

Long Flanking Sequence:

GCTCACCTGATGCAGGATCTACACCTGTTCTCCATGGATGACCTCCACAGGGTGAAGAAAGGTCAGCTGTGTGCTGTAGCCAAAGCCTTGCTGCAGTCTTCAGTTGCTCACATAGACTTCTGTGAGGTTTGTAAGCAATTATTTGTACACTCACACTATGGTCATTCAGTGTTCAGAGTGTTTAACAGTCATCATATCTCTTGATTTCCCAGCTGTGTCAGGCCAAAGGTTTTATTTGTGAGTTCTGTCATGGGAAGGAAGTACTCTTCCCTTTTCAGAGAGATACCTGCACCCGCTGCCAAGGTCATATCAGTGTGCACCACCAACATAATCTGTTTATTTATGTTCAAAATCTTTTTTAAACAATATTTCTGTCTGCATTACTCCATTAGAATGAGCCAATGACTGTTGCCTTGTATCATTTCTTTTTAGATTGCAGAGCCTGCTTCCACATTTCATGTTTCCGCGATGAATCATGTCCCAAATGTGCCAGACTCCAG[A/T]AACGAAAGAAACTCCAAGAAGACATGAGTGTATGAGACATCCTACACGTGCATTGCTGCATTTTAAAGCTTTTGGGTGTTCAGAGCTCTAGACTGACATGTATATATGTTGTGATTTTGTAAACCACAGATGAACGTCTGTTTTATTTATAATCTGATGTTGATGTTGAATTTTTTATATTGTATTTGGATTTTTGCAGTCATTTAGTATATATAATCTAAAAATATTATTTTAAATATAGACCTGCCAACCCTTAATTATGAAAAATAAAGCTTATTAAATGAATACATAGAGTCATCCACAGCTGACATTTGAACATTAAAATCTGTTTAAGAAAGATGCAACAAAAGAATTGACAATGTGTACACATATACAGGGGTGTAGCGGACATTTTAAATGTATGTGTGTGGGGGGGGGGGGGGCAGCTTTAAACGATACAAAAGTTTATGTTCATACAATTATTGATCACCTGTTTCTAAATGGTCTCTAAAAGGGAAAGG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa34649

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000122382	Nonsense	268	277	7	7
ENSDART00000132160	None	None	249	None	2
ENSDART00000143479	Nonsense	273	282	7	7

Genomic Location (Zv9):

Chromosome 9 (position 26116537)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	9	25272323
GRCz11	9	25083192

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TTTCATGTTTCCGCGATGAATCATGTCCCAAATGTGCCAGACTCCAGAAA[C/T]GAAAGAAACTCCAAGAAGACATGAGTGTATGAGACATCCTACACGTGCAT

Long Flanking Sequence:

CACCTGATGCAGGATCTACACCTGTTCTCCATGGATGACCTCCACAGGGTGAAGAAAGGTCAGCTGTGTGCTGTAGCCAAAGCCTTGCTGCAGTCTTCAGTTGCTCACATAGACTTCTGTGAGGTTTGTAAGCAATTATTTGTACACTCACACTATGGTCATTCAGTGTTCAGAGTGTTTAACAGTCATCATATCTCTTGATTTCCCAGCTGTGTCAGGCCAAAGGTTTTATTTGTGAGTTCTGTCATGGGAAGGAAGTACTCTTCCCTTTTCAGAGAGATACCTGCACCCGCTGCCAAGGTCATATCAGTGTGCACCACCAACATAATCTGTTTATTTATGTTCAAAATCTTTTTTAAACAATATTTCTGTCTGCATTACTCCATTAGAATGAGCCAATGACTGTTGCCTTGTATCATTTCTTTTTAGATTGCAGAGCCTGCTTCCACATTTCATGTTTCCGCGATGAATCATGTCCCAAATGTGCCAGACTCCAGAAA[C/T]GAAAGAAACTCCAAGAAGACATGAGTGTATGAGACATCCTACACGTGCATTGCTGCATTTTAAAGCTTTTGGGTGTTCAGAGCTCTAGACTGACATGTATATATGTTGTGATTTTGTAAACCACAGATGAACGTCTGTTTTATTTATAATCTGATGTTGATGTTGAATTTTTTATATTGTATTTGGATTTTTGCAGTCATTTAGTATATATAATCTAAAAATATTATTTTAAATATAGACCTGCCAACCCTTAATTATGAAAAATAAAGCTTATTAAATGAATACATAGAGTCATCCACAGCTGACATTTGAACATTAAAATCTGTTTAAGAAAGATGCAACAAAAGAATTGACAATGTGTACACATATACAGGGGTGTAGCGGACATTTTAAATGTATGTGTGTGGGGGGGGGGGGGGCAGCTTTAAACGATACAAAAGTTTATGTTCATACAATTATTGATCACCTGTTTCTAAATGGTCTCTAAAAGGGAAAGGGTC

Associated Phenotype:

Not determined