Busch Lab

ZMP

cacna1f

Ensembl ID:
ENSDARG00000023683
ZFIN ID:
ZDB-GENE-031104-1
Description:
Novel protein similar to vertebrate voltage-dependent calcium channel P/Q type alpha 1 subunit (CACN
Human Orthologue:
CACNA1F
Human Description:
calcium channel, voltage-dependent, L type, alpha 1F subunit [Source:HGNC Symbol;Acc:1393]
Mouse Orthologue:
Cacna1f
Mouse Description:
calcium channel, voltage-dependent, alpha 1F subunit Gene [Source:MGI Symbol;Acc:MGI:1859639]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa41191 Nonsense Mutation detected in F1 DNA Not yet available
sa34385 Nonsense Mutation detected in F1 DNA Not yet available
sa1442 Essential Splice Site F2 line generated Not yet available
sa14371 Essential Splice Site Available for shipment Available now
sa10599 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa41191
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000041564 Nonsense 182 2126 5 55
ENSDART00000134151 Nonsense 244 1612 5 40
ENSDART00000136403 None None 313 None 5
Genomic Location (Zv9):
Chromosome 8 (position 23735734)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 22861552
GRCz11 8 22882791
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTGTGTGTGTGTGTGTCTGTGTGTGTGTTTGCAGGCCTACAGATTGTGT[T/A]AAACTCCATCATGAAGGCGATGGTTCCCCTGTTGCACATTTCTTTGCTTG
Long Flanking Sequence:
GCAGGGAGAACATGCAAACTCCACACAGAAACGCCAACTGAGCCGAGGTTTGAACCAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGCCTCGCCTAAGTCATAGACTTTATATTCTATACTGTACATTTTTTCTATTAAGTGACAAGACTTTTGTACGAGCAAAGTCAGACCTTACTGTCCTAATTAAATAAATAAAAATCAAGACATGATCATATTATAATTTCGTAAAGTTAGATTAATCTAGAGGCCTTTACTTTTCATATAAGTCACTTCTGATACCAAATGATCAACTAGAAGTCAAGTTTTTATTTGTTGTTCCTAAAACTTGGATAGGCAAGACTTTTGACCAAAAAAAGTTTCCTAATTTCCACAAAATATTGGTTTTGTGTTACAGATTGTGCACCAATATAAAAGCCATTATTTCTGTGCTTTCTCTGTGTGTGTGTGTGTCTGTGTGTGTGTTTGCAGGCCTACAGATTGTGT[T/A]AAACTCCATCATGAAGGCGATGGTTCCCCTGTTGCACATTTCTTTGCTTGTCCTCTTTGTCATCATCATCTACGCCATCATTGGACTGGAGCTCTTCATAGGACGAATGCATCGCACCTGCTTTTTTATAGGCACAGGTAACCGCACACACTCACATAAAAGATGAATATATGTCTTTTGTCATTCTCTGTCATTCTCCATCTGCCTCTCTCTTCTGTTTCTTAGATAATTATGCAGATGATGATCCTCTGCCCTGTGCGTTTGCGGGTCATGGTCGCCAGTGTTATGTCAATGGCTCTGAGTGCAGGGGAAAGTGGGAAGGGCCGAACGGTGGCATCACAAACTTTGATAACTTCTTCTTTGCCATGTTAACAGTATTCCAGTGCATCACAATGGAGGGCTGGACAGACGTCTTGTACTGGGTAAGCTACTGTATGCAGTGTTTTCATAGATTGCGACTGTTTTTCTTTAGTAGAACGTTAAAGAAGACTTTAAGCTGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa34385
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000041564 Nonsense 542 2126 13 55
ENSDART00000134151 Nonsense 575 1612 13 40
ENSDART00000136403 None None 313 None 5
Genomic Location (Zv9):
Chromosome 8 (position 23744086)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 22869904
GRCz11 8 22891143
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AATAAGGTTCTACTCTCGTTGTTCACGGTGGAGATGCTGTTGAAAATGTA[C/A]AGTCTGGGGTTGCAGGTTTATTTCGTCGCGTTTTTCAACCGTTTTGACTG
Long Flanking Sequence:
CACTGTAAATAATATAATAATGTAACAATATAAATAATATAACAATGGTATATGCAGTGATTACTACATTATTGGTTTGTTTTGTTTTTTTAGCCGTGCCCTGCGTCGCTGGAACCGCTGCATCCGGAGAAACTGTCGTACGGCAGTGAAATCTGTGACATTTTATTGGCTGGTGCTGATCCTGGTCTTCCTCAACACAGCTCTCAGTGCTTCAGAGCATTACAACCAACCAGAATGGCTCACAGACGTTCAGGGTATAAAGCTGTTACCAAACATCACCTTACTGACACATCATGTGTACTGGCCCACAGCGTCAGCCACACTTTTATTTATGGACATCTGTTAGCTGATGTGTTGTCAAGGTGTCCATCAAGGTGTTACCGGTGACAAAAAACATTGAGCAGGGATCATATCTGTTTCTCTCCTTCTCTGTTTCTCACAGACATCGCCAATAAGGTTCTACTCTCGTTGTTCACGGTGGAGATGCTGTTGAAAATGTA[C/A]AGTCTGGGGTTGCAGGTTTATTTCGTCGCGTTTTTCAACCGTTTTGACTGTTTTGTCGTGTGTGGTGGGATTCTGGAGACGGTTCTGGTGGAGATGGAAATCATGCCGCCTCTTGGCATCTCAGTGTTACGCTGCGTTCGCCTGCTTCGAATCTTCAAAGTCACACGGTACTCGAGCCACTTTTATTCACACAGTGTGATTTAAATGAGCTTTCTATTGTTTACATGACCCTCTTTTTTTTAGATTTTCTTGGCAGAAAACGTTAAGCATCAAAAAGTAAATGAAGAATATAATTTCAATTTATAAACGTAAAAAAAAAAAGTGATATAGCTTTTTGTTTGAATTCATTTTAATATGCTTATTGTGTAACACTTGTATATCTTTGTTATTGCCTTTACCTGGATGGTTGACCTCAACATTTTTATTTACTCATTGTTTATTTTCCCTCAAGTGCTTCTAAACATTTATGAGTTCCTTTCTTTTGTTGAACACCGAAGAAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1442
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000041564 Essential Splice Site 1449 2126 40 55
ENSDART00000134151 Essential Splice Site 1429 1612 35 40
ENSDART00000136403 None None 313 None 5
Genomic Location (Zv9):
Chromosome 8 (position 23762681)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 22888499
GRCz11 8 22909738
KASP Assay ID:
554-1368.1 (used for ordering genotyping assays)
KASP Sequence:
ACCTGGATGAGTTTAAAAGAATCTGGTCAGAGTACGACCCAGAAGCCAAG[T/G]AAGACTATCAGTTTCTCTTAAACTTTTTAATCTATTTAAACCAGAAGCGT
Long Flanking Sequence:
CATCAAATGAGTCTTGTTCTAAATATGCCTGACAAGATTTTTTGGCTGTCATTGCACTGAATGACAAATCATGGGGGAATTTTTATCCATTTCTTCCTGGCAGATAAGAAAAAATCATAGAAAAAATTACAGCTAGTAAGTGCTGTGCAGGTAAACCTCACTTCTCTGACCTCTAGAGGTGGTCTAGCGACAGATGCTGGAGGCCATGGTCTTTAGCCTCCTTGTTAGAGCAACTGACTCTTATGCGGAAGGTCGTTGGTTCTATCCCAGCTCGGAGCAGGTTGGGTGGTGTAGGACCAGGATGTTTACACAGGCCATGATGTTACTATAATTTGCATGGTTACCTGCAAATGTTTGTTGTGCCTTCTCAGATTATTAATCTGTTTGTCGCCGTCATTATGGATAATTTCGACTACCTGACTCGTGATTGGTCAATTCTTGGCCCACATCACCTGGATGAGTTTAAAAGAATCTGGTCAGAGTACGACCCAGAAGCCAAG[T/G]AAGACTATCAGTTTCTCTTAAACTTTTTAATCTATTTAAACCAGAAGCGTCTTCAAATGTGTGTTGTTTACCAGGGGTCGTATTAAGCACTTGGATGTAGTGGCTTTGCTCAGGAGGATCCAGCCACCGCTTGGATTTGGGAAGCTCTGTCCTCATCGTGTGGCCTGCAAGGTACAGACACGCATACACAGAGTCATTTGCTATGATTTCTCTTTCTATTTTTTCCTCTCTTACTTTGCTTCTGTCTGCTGTTGGCAGAGGCTGGTGGCCATGAACATGCCCCTGAACGCTGACGGTACGGTGACCTTCAACGCCACCCTGTTCGCCCTGGTCAGAACTGCCCTGAAAATAAAAACTGATGGTCTGTTTGGGCAAACACACACTCACATGCTGCATATTCATGCACATCACCACCGTTTTAGCTAGAGATGATTCAAATGAAAATGTGCTTTGCATATAAATTATTCAAAACAAACTAAAATGTGACCATAGAATATTAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14371
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000041564 Essential Splice Site 1481 2126 41 55
ENSDART00000134151 Essential Splice Site 1461 1612 36 40
ENSDART00000136403 None None 313 None 5
Genomic Location (Zv9):
Chromosome 8 (position 23762854)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 22888672
GRCz11 8 22909911
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCCACCGCTTGGATTTGGGAAGCTCTGTCCTCATCGTGTGGCCTGCAAGG[T/C]ACAGACACGCATACACAGAGTCATTTGCKATGATTTCTCTTTCTATTTTT
Long Flanking Sequence:
TAGAGGTGGTCTAGCGACAGATGCTGGAGGCCATGGTCTTTAGCCTCCTTGTTAGAGCAACTGACTCTTATGCGGAAGGTCGTTGGTTCTATCCCAGCTCGGAGCAGGTTGGGTGGTGTAGGACCAGGATGTTTACACAGGCCATGATGTTACTATAATTTGCATGGTTACCTGCAAATGTTTGTTGTGCCTTCTCAGATTATTAATCTGTTTGTCGCCGTCATTATGGATAATTTCGACTACCTGACTCGTGATTGGTCAATTCTTGGCCCACATCACCTGGATGAGTTTAAAAGAATCTGGTCAGAGTACGACCCAGAAGCCAAGTAAGACTATCAGTTTCTCTTAAACTTTTTAATCTATTTAAACCAGAAGCGTCTTCAAATGTGTGTTGTTTACCAGGGGTCGTATTAAGCACTTGGATGTAGTGGCTTTGCTCAGGAGGATCCAGCCACCGCTTGGATTTGGGAAGCTCTGTCCTCATCGTGTGGCCTGCAAGG[T/C]ACAGACACGCATACACAGAGTCATTTGCTATGATTTCTCTTTCTATTTTTTCCTCTCTTACTTTGCTTCTGTCTGCTGTTGGCAGAGGCTGGTGGCCATGAACATGCCCCTGAACGCTGACGGTACGGTGACCTTCAACGCCACCCTGTTCGCCCTGGTCAGAACTGCCCTGAAAATAAAAACTGATGGTCTGTTTGGGCAAACACACACTCACATGCTGCATATTCATGCACATCACCACCGTTTTAGCTAGAGATGATTCAAATGAAAATGTGCTTTGCATATAAATTATTCAAAACAAACTAAAATGTGACCATAGAATATTACTAGGTTGTAAAAGCTTTTCAAATAGTGACAGGTTAATAACACAATTTGCATTTACACCAAACCAAGGTTGACTTGGTCTTGCAGTAGGTACCTGTGAAATCTGATGTGGCTGTAATGTGTTTTTTTTAGGGAACCCGGATCAAGAGAACGAAGAGTTGAGAATTATTATTAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10599
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000041564 Nonsense 1905 2126 52 55
ENSDART00000134151 None None 1612 None 40
ENSDART00000136403 Nonsense 95 313 3 5
Genomic Location (Zv9):
Chromosome 8 (position 23771647)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 22897465
GRCz11 8 22918704
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACATACAGTGTTTAAGAAGGCAAGGCAGCAGCGATGATCTGCCCATTCCA[G/T]GAAYCTATCATCAGAACTCGCCGCCCTGCAGAGCACGCTCACAGGTAACA
Long Flanking Sequence:
CATTGTATCCTTAAATGTATTCCATTTGAATCATTTTTTGATAACGGGTAATTCGAAAAAAATCCTTAGCAAGGTCTTAAAAAGTCTTACATTTAATTTGGTGAAACTTGCAGAAACCCGATGATAAAGGATTTAAAGCATATGACGAAAACACAATATCCATATTAAAAATGTTTTCCATCAGGCATGGTTATCCAGAGGACAGCACAATTTTCCAAGGACATAGAGACATGTATGATGGACACTCTATGAGACACCCTGTCTATGGAAATCATTATGGAAACAGTTATGGAGATGGCAGAAGAACAGCACGGAGACGCCTCCTGCCAGCAACACCTACAGGTAAAATCAAGTATTGATAATTTTGCTTGTAGGCAAAGGTATAACAAGTTTTATCTTTCTGTTTCACTCCATATTTTCTTTATGTTTTAGGGAGAAAGGCTTCGTTTAACATACAGTGTTTAAGAAGGCAAGGCAGCAGCGATGATCTGCCCATTCCA[G/T]GAACCTATCATCAGAACTCGCCGCCCTGCAGAGCACGCTCACAGGTAACATCACCAAATGATATATAAAACAGTCTATGGCACACTACTTAAGAAGATTACATCTGTTTCACAAAATGCACATATGACAATGACAATTTATTTATATAGCACAATTAAAACAACCCAAGTTGACCAATGTGCTTCACAATAATTAAAAAACCATGAACAGCAAGAATAAGTCAAAGACAAAAGCAAGTTTAAAAAATTAAATACAATGAATAAGAATGATATTCAGTGTGTCAACATAGCCAGTCATTATTAGTAAAAATTAAATAATTATAGTTTTTATAATCAGACTTGATAAAAACAGTCTGCAGAAACACTTTGATTGACATTCTTCCTTAGGGCCCTATCATACACCCGGCGCAGTGTGGCGCAAGGCATAATGCAGTAGTCTTTTGGTAGTTTAAGCTTGGCGCAAGAGTCGTTTTGAGGCTTTGCGCTACGCTATTTAAAGAG
Associated Phenotype:
Not determined