Busch Lab

ZMP

hcfc1b

Ensembl ID:
ENSDARG00000012519
ZFIN ID:
ZDB-GENE-030131-2411
Description:
host cell factor C1b [Source:RefSeq peptide;Acc:NP_001122009]
Human Orthologue:
HCFC1
Human Description:
host cell factor C1 (VP16-accessory protein) [Source:HGNC Symbol;Acc:4839]
Mouse Orthologue:
Hcfc1
Mouse Description:
host cell factor C1 Gene [Source:MGI Symbol;Acc:MGI:105942]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa34295 Nonsense Mutation detected in F1 DNA Not yet available
sa7624 Missense Mutation detected in F1 DNA Not yet available
sa38667 Nonsense Mutation detected in F1 DNA Not yet available
sa38666 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa34295
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000019533 Nonsense 801 1990 14 27
ENSDART00000132536 Nonsense 804 1993 15 28

The following transcripts of ENSDARG00000012519 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 8078389)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 7523026
GRCz11 8 7541757
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTCCAGGGAAAATCATCACAGCTGTGCCTAAGCTGACAGGTGCAGGACAA[C/T]AGGGAGTCACACAGGTGAGGCCCAACTGATTTCAAATCAGTAAAAGCTCT
Long Flanking Sequence:
AACTGGTCACATCTGCTGATGGCAAGCCAACCACAATCATTACAACTTCACAGGCTGGAGGGACTGGCACCAAACCCACCATCCTGGGCATCAGCAGTGTCTCTCCAACTACCACCAACAAACCAGGAACCACCATCATTAAGACCATTCCCATGTCTGCATTACAAGGTGCAACAGGTCTGCTTCTGATCTGATTGTTTGGTTAGAATTCATACAATCAGGAGATTTTCATCCAAGTTGTTCCTCAAGCCTGTTATTTCTGCGTTTTAAATCGCACAAGCTCATGTCTTTCATTTCTTACTAACAAATATGTTTTTTATGCATCATTAGCAAGCTCACATTATTTCCTGTTATTATTTCCTGTCTTGTTTCTAGGCGTGACTAGCAGTGCTGGCATCAAGTCCCCCATCACAATTATCACCACTAAGGTTGTTACTCCTGGCACAGGGACTCCAGGGAAAATCATCACAGCTGTGCCTAAGCTGACAGGTGCAGGACAA[C/T]AGGGAGTCACACAGGTGAGGCCCAACTGATTTCAAATCAGTAAAAGCTCTGCATCGAGCTAATGTCATTTTAAATCATGTGAACTTTCAACCAGCAGTAGTGCTGCTTTTCTACATTTTTATAAAGCACAAAATTGTCCAAATAGGCATTGTTCTTTAAATCACCAAGCACTCTTTCTGAGTTTTATAACATGTAAAGTTGAAACTTCATAGACGCATTTTAAGAAAATATAGTAGTTCGCATTTGACGTGGATTAAACCTTTCCTAAAGCTATTGAACAATACCCATTCTTGTCTTTGGATAATTTTGAAAAGCTTTTTTGTTCCTCTTGAAATGTTGACTACTGAATATACATGTCTGTTTAAGTAGAATTTTGCATTAGATGGAAAAAAAATAACAGCAGAAAGGCGGATTGTAAATACAAATGGACTTTCTGCCGTTAGGTGGCGCTTATAGAGCAACAGAAACAGTTGTTTCCCATAATAAAGGCTGTTATCTAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa7624
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000019533 Missense 891 1990 16 27
ENSDART00000132536 Missense 894 1993 17 28

The following transcripts of ENSDARG00000012519 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 8076483)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 7521120
GRCz11 8 7539851
KASP Assay ID:
554-4356.1 (used for ordering genotyping assays)
KASP Sequence:
ATGCCAGCCTGGCGACTCCTGTCACCACACTGGCCTCCATCGCCACTTTA[T/C]CCAGCCAGGTGATCAATCCCACAGCCATCACTGTATCTGCTGCCCAGACC
Long Flanking Sequence:
AAGGTTACCCTAAAAGTGGTACAGTATGGTTTGCTTTTAGGTACCCGTTGACAGTGGAAACTGTTATAAGCCATAAAATATAAGTTTTAAAAGCACACCACTCAGTGGAAGCTGGCCGTAAGAGGACTGTAAATATTTTATATGTGCTCAGGTGGTCCTGAAGGGAGCGCCAGGGCAGCCCGGCACCATCCTGCGCACTGTGCCTATGGGTGGTGTGCGGCTGGTTTCACCAGGCACTGTGTCTGCCGACAAACCAACTGTTACCACACTGGTCGTCAAGGGCACCACAGGTGAGAATATTCGGACTGTGTATTTGCAGTATAGATGTTGTATGTTGATGTTGCATTGTTGGCTTTGTGTTTTAATGATGCGTTCTTTGATTAGGAGTCACGACTCTGGGTACAGTAACTGGAACTGTATCAACTAGCGTTGCAGGAGCCAATGTTGCTAATGCCAGCCTGGCGACTCCTGTCACCACACTGGCCTCCATCGCCACTTTA[T/C]CCAGCCAGGTGATCAATCCCACAGCCATCACTGTATCTGCTGCCCAGACCAACCTCGCCACCGCTACAATACAAGTGAGTTACTTTATTATTCGGGACAGTTCACCCAAAAATTTAAAATGTCATCATTTACTCACCTTTCACTTGTTTTGACTTTGAAATTGTATTAAGATTTTTCATACTATTGTAATTGACATTTTGTATGTTGTTGTTTTTTCCCAAACTCGCCTTGTTCAATTGTTTAAACCTACTTGAGTTTCTTTCTTCTGTATAAGTTTTGAAGAACGATAGCTGGCACCCATTCACTGTCATTTTTTTCCTGCTTGTCAATGTGTGCCAGCAACCAGCAGTCTTTTAAATATCTTATTTTATGTTCAAAAGAAGACACTCATAATGGTTTAAATTTCCAGCGAGAATAAATAATGAGGTGATTTTCATTTTAAGGTGAACTGTTTCTTTAGGAGCTACAAGACATTAATCTCCCAGCAAAGATGCATTGTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa38667
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000019533 Nonsense 1179 1990 17 27
ENSDART00000132536 Nonsense 1182 1993 18 28

The following transcripts of ENSDARG00000012519 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 8073405)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 7518042
GRCz11 8 7536773
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCCACCTTGCGAGACGCGTGAAACGGGCACCACTAGTACACCTACACAAT[C/A]AAGCGCAGATATGGAGAGTGGACAGAGTGGTTCTGTGCAAAGGGTGTGTT
Long Flanking Sequence:
CGTAACGGGCACCACCAACACCTCAACCACCGCCTCTGCAAACATGGGCAGGGCACAGCAGGTCTGCACCAACCCGCCATCAGAAACCCATGATACGGGCACCACCAACACAGCCACCACTGCCAGCTGTAATATGGGCTCCACAGAAATGGGTACCGTGAACAGCAAACCAGGCTCTTCATCGCCGCCTGCGTCCTCCTCTTCTGAACCATCGACACCTGTCTCAGAGAGTGGAGCCGAAGCAGGCGTCATGCGTCCAGAAAACCTCCGCACAGGCACCACATACACCTCCACCACCGCCCGCTCCAACATGGGCTCTGACCAGACGGGAACAGTCCAGAGCTCCAATAAGAGCCAAGCCGCCATCTCCTCTACAATGATGCCAGTGAGCTCCAGCGAATCTCCCGGTGACACAGACACTTCTGACGTCTCCGGCAGCGTCTGCTCAAATCCACCTTGCGAGACGCGTGAAACGGGCACCACTAGTACACCTACACAAT[C/A]AAGCGCAGATATGGAGAGTGGACAGAGTGGTTCTGTGCAAAGGGTGTGTTCCAATCCTCCTTGTGAAACACATGAGACTGGCACCACCAACACGTCAACACAGGCATCGTCTTCAATGGCCGCTGGACAGAGTGGCACTGCGCAAAGGGTGTGTTCTAACCCTCCTTGTGAAACACATGAGACTGGCACCACCAACACGCCGACACAGGCCTCATCTTCATTAGGTGCTGGACAGAGTGGCACTGTGCAAAGGGTGTGTTCTAACCCTCCTTGTGAAACACATGAGACTGGCACCACCAACACGCCGACACAGGCCTCATCTTCATTAGGTGCTGGACAGAGTGGCACTGTGCAAAGGGTGTGTTCTAACCCTCCTTGTGAAACACATGAGACTGGCACCACCAACACGCAGACCCAGGCTTCTTCTACTTTGGGTGCTGGACAGAGTGGTGCTGTGCAAAGGGTGTGTTCCAACCCTCGTGAAACGCATGAAACGGGCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa38666
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000019533 Nonsense 1806 1990 24 27
ENSDART00000132536 Nonsense 1809 1993 25 28

The following transcripts of ENSDARG00000012519 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 8 (position 8051118)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 7495755
GRCz11 8 7514486
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTTATTGACTCTGTTGCAGGACGATTCTGGCGCAATCCCAGACTACAGC[C/T]GAATGAAGAAAATCGAGTTGTCTCCGGGCACTGCTTACAAGTTCCGTGTG
Long Flanking Sequence:
AACTAACGCTGTAATTTTGTTTTATTTTATAAATCAGTGGTTCTCATTTTTTTCATCAAGTACTACCTCAGAAAAAAATTCTCTCCAAGTAACAACCATTATTGAAATACAGTAGCGTAGTAGGCCCAATGAAGCAGCTACAGCTAAGCACAGTTCAAAAACCAGGCAGTGGTTAATCCCAACATTTAAACTCAGCACTTAATGCGATGTGACTATTGCAGATGCGCACATTGCAATCCTAAAACCATATATTGTGCATTCCTAATCTTGGATGGTTTAGACATGTTCCACTTCCGTTATCATAGAAAAAAACGCTTTGAATATGCCGTTCTCCATCCTTCAGTTGTTGGTTTTATTGAAAGCAGTACTTGTTGTCATTGACATCCTCCTTACATTACTTGGGGGCTTTAGTTCTTGGGGAACCAGGCCTGGTGAGTAAAACATTGATCATTTTATTGACTCTGTTGCAGGACGATTCTGGCGCAATCCCAGACTACAGC[C/T]GAATGAAGAAAATCGAGTTGTCTCCGGGCACTGCTTACAAGTTCCGTGTGGCCGGTATCAACGCATGCGGCCGAGGGACTTTCTCTGAGGTCTCTGCATTCAAGACCTGCTTACCGGGATTCCCTGGAGCACCGTGTGCCATCAAAATCAGCAAGGTCGGTCACAGCAAATCACTTGGATTTGAATTCAAATGTATGTTTATTTTGATGACTGATTGTTGGACTGGGGATGGTTTAATTAAATTGGGTATAATAAAAAATGTCCTCCTTACAGATCAATAAACCTTTTTAAACTGTAAATTTAGTCGGGTCTATACAAGAGTGTGTTTCTATTTACGTTTTTCATTTGTTTATTTATTTATTTATTTATTTATTTTTTTGACATGGACATCACAGTTACACTGGACAAACCAAATGTATTTGTTAAAGTGACTTGCAGACTTGCTTACTCAACACCTGTCCAAGGGAGGCTTGACATTTAAAAATAAAATGAAAATAAAA
Associated Phenotype:
Not determined