ZMP
col4a5
Ensembl ID:
ZFIN ID:
Description:
collagen alpha-5(IV) chain [Source:RefSeq peptide;Acc:NP_001116702]
Human Orthologue:
COL4A5
Human Description:
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:2207]
Mouse Orthologue:
Col4a5
Mouse Description:
collagen, type IV, alpha 5 Gene [Source:MGI Symbol;Acc:MGI:88456]
Alleles
There are 7 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa27050 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa1609 | Essential Splice Site | Available for shipment | Available now |
sa34181 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa41016 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa21069 | Nonsense | Available for shipment | Available now |
sa16790 | Essential Splice Site | Available for shipment | Available now |
sa41017 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa27050
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000073827 | Essential Splice Site | 127 | 1659 | 6 | 49 |
ENSDART00000108738 | Essential Splice Site | 101 | 1633 | 5 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52602530)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 7 | 50872280 |
GRCz11 | 7 | 51147350 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGGATGGTGCTCCAGGACCCAGAGGAATTCCAGGCTGTAATGGAACTAAA[G/A]TATGAAACACTACAAACAATCATTGAACAGACAATATAAGCTGAAAACCT
Long Flanking Sequence:
TGATGTCCAATAACGACGTCAAATTACGTTGATATTTGGTTGATTTTAAGTTATGTTGGAAAGTGACCAAAATCCAACGTCTGATAGAGCTCATAGTGGTAACGTCCACAGAATGTCAAGGTGTAACATGATTAGACATTGATATTTGGTTGATTTTAGCTTGGACGTTGGACATTGACGTCGGCCTGACGTTGAGTTCAGACGTCAACCCGATTTTCCTTTCCAAAATCCTAACTCCCCACGGTAGGGTACGTTGGGGTATAACATCAATATGGCGTCATGTTGACATCTTGTGCCTGCAGGGAATGCTTGGCACATTAAATTGCCTACATTTAATATATCACACCTCTTAATAGGTGTATATTGCATGTAGTCAGATTTGCATGTAGTATTATTGCGATAACGATAATTTTTCAATGAGTGTTTTTGACCTGCAGGGTCTTCCAGGACAGGATGGTGCTCCAGGACCCAGAGGAATTCCAGGCTGTAATGGAACTAAA[G/A]TATGAAACACTACAAACAATCATTGAACAGACAATATAAGCTGAAAACCTAAAAAGTGCTAACAAACATAAACCTCTCTTCTTTGTCAGGGTGAAAGAGGATTCCCTGGAAATCCAGGTCGCTCAGGTTTAGATGGTCAACCAGTAAGTGCTACTTTTTGTCACATTTTTAAGTTGAAGGCATAGTATCTTCTTCTTCTAAGGTGCTGTGTGTACGTTTTTGACTTTTAAAGATGCTTTGGTGAATGTTAAGTACTAAATGAACATACTTGTTTGTCTGTAAAACAATGTTAAATCAGTTAGTTTCTTTTAAAAGTAGGCCTATGTGTTTTGTGTCATAATGTCTTGTGTAACCCACCCACTGCTAGTTTACCCAATTTTATTTGAACACCCTAGGTTGCCTTGGCGAGGAGAAAAAAAGTGTATTTCACTTTAGTAATGAAAGATGCCTTTATATGCAGCATGGGGTGCAGCTAAAATGGCGTCCTCTGGAGGACAGTA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa1609
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000073827 | Essential Splice Site | 259 | 1659 | 13 | 49 |
ENSDART00000108738 | Essential Splice Site | 233 | 1633 | 12 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52607601)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 7 | 50877351 |
GRCz11 | 7 | 51152421 |
KASP Assay ID:
554-1550.1 (used for ordering genotyping assays)
KASP Sequence:
TTGGTGAAGTGTCAGGTTCACCAGATACAGTCATTCAACAAGGAGAAAAG[G/T]TATTCTTACCTCTTTGCTTCAATATGTTTTGACTCAYAGCCCAAGGAAGT
Long Flanking Sequence:
GCAAGCTTGCACAGACACTCCATTGCAAAATACTGGCATAAACTAAACTATCATATTTTAAAGACATGTTGGGGGGAAATGGAATTTAATGTTGTGCTTCTTGTCCGATCTGACCCACTTTACATCTTATATTATTCAGGCAGTGCAGATTACTGAGTTTTAAAGAAAACAGATGTTAAACCTGGCGATTTTGTAATAAAAATATTCACCAGAAGCTGTTGGGCTGGCTGTCTGAAAATTAAAAGTCTGTATGCGTACAGTATACCTCATTCCAACATTCTTGAAAATATCTTCTTTTGTGTTCATCAAAGGAAAGAAACTCAAACTGATTCAACTGGATCAAGTGTAAGATGAGTAAATGATGGCTGAATTAAAATTTTTGGGTGTGCTTATGTTTATGTTTGCAGGGTGACCGTGGATTAAAAGGACCTCCAGGGCCACCAGGACAAGTTGGTGAAGTGTCAGGTTCACCAGATACAGTCATTCAACAAGGAGAAAAG[G/T]TATTCTTACCTCTTTGCTTCAATATGTTTTGACTCACAGCCCAAGGAAGTTTTTAAGCAATGATTTCTTTGTTTTTTTGCCACACACACTGACAAAGAGTAAAAATGTTTCTCAGTGGTTTCAGACTGCGAGTAACAACCTTTATTCATTCTGTTGGTTCTGAGATACATCAGCAAACGTACCAAAGAGTGAATTAAATCAGCTCAAATTGTTTGAACTTCATGCAGCATAAACCATTAATCACTTAGTTCAAATGAAAAGGCAGGGCTGTGTGAGCTAAAGCCAATGCACTTTACTGGAGCAATCATTTACTTCACCAATTAACAGCATAGTTTATTACAGAGTTGTCTGGTTGGAAAAAGAACACCTATCAATCAAATTAGCAGCTATTACCATGACTTTACTATAGAAGCATTTACAAAAAACATTTTCAGAAAAGTTACATGTATATCAAATGTTTGAATACTGTTAATTTGTTAAATATTTTAAAGCATTAATGA
Associated Phenotype:
Normal
Stage | Entity | Quality | Tag |
---|---|---|---|
Larval:Day 5 ZFS:0000037 |
whole organism ZFA:0001094 |
quality PATO:0000001 |
normal PATO:0000461 |
Mutation Details
Allele Name:
sa34181
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000073827 | Essential Splice Site | 388 | 1659 | 20 | 49 |
ENSDART00000108738 | Essential Splice Site | 362 | 1633 | 19 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52615921)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 7 | 50885671 |
GRCz11 | 7 | 51160741 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTCTTTTGGTAGGTATTCAGGGGCCACCTGGTCCACAGGGTCCTCCAGG[T/C]AAGTGGCATTTATTAATTATTATTACTATTTTGTTATTTTTAAGCAACAG
Long Flanking Sequence:
GGCACAATGATATTATGCAGCACCTGAAAATAGTCTTCAGCAAGCTAACTAGGTAAAAGCACTGTTTAAAGTCTTATGGTACAGTACATGATGTAACTACAACTTTAAGCTTTAACTCAAGCGTTAAATTGGAAAATTATCAAAACTTTTTTTTTAATTTCTTGAGCAACTTGCTAATGGTCAGTGATTTATGCTAAGCTAAGCTAAAAGTGCTCATATGGGGAGATCAGCTGTATGGATTAAAACATGGTAAAACTCAACCGCTTAACTCTAGATAACCTGTAAATATAGCATATTTTCAAAAAAATTGGTGTGTTCCTTTAAGAACAGTTAAATCATGGTCTGTGATTATCAAATGATGATGTAATCGCTTTTATACTAGTTTTTTATACTGTTTATCCAGAAGAATAAGTTTCACAGTGTTATTTGTGTCAGCATTTGACCCAGTTATGTCTTTTGGTAGGTATTCAGGGGCCACCTGGTCCACAGGGTCCTCCAGG[T/C]AAGTGGCATTTATTAATTATTATTACTATTTTGTTATTTTTAAGCAACAGTTTTTTTCATTTATTTTTAATATGTGAATTTCAAGTTTTTATTTGCAGTCAAAGCAATAGTTCACCCAAATGAAAACAAACAAAAAAAAATACTCTCCATTTCATCACCATCAAGGGGTGAACTGTGCCTTGAATGTATGTAGTCACGATTTAAAGTGGTCATAACACACACAGTTTCTGCCATTTTCATGCCAAGCTGGAGTACATACAGTATAGAATAGTATTGTATTATTCCTATTGCAATTTAGTTTTATCAGGTTATTAGAAGACAGGTAAAGATGTACCAATTCTCTCCTAAAACAGTCAAGCCCTTGGATTCATGTCGTACACTTAGCTAAAACATCACAAGCGTTTTTGTATATTAATTTTCTACAAGCTCCAACATTTATTCGACATCTATTTTAATCTAGCTTTTTCTCATTGTCCAACAGTCAGAGTGCATGAAACAGT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa41016
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000073827 | Nonsense | 672 | 1659 | 26 | 49 |
ENSDART00000108738 | Nonsense | 646 | 1633 | 25 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52621071)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 7 | 50890821 |
GRCz11 | 7 | 51165891 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAGAAGTTGGTGAACGTGGACCCCCAGGACAGGATGGAGATCCTGGTTCA[C/T]AAGGACGTCCAGGTATAGAATATAATTACCTATCTCACTACGCTTTGTTC
Long Flanking Sequence:
ATTTTAAAAAAATAATAATAGGGGCTCTTTAAGGATCTTATTCAGTTAAAATGCAGTTTATATAAAATGCATATAGGCTATTTTCTGCTCCATTCAAGGTAAATATCTACTGTAGATTAGTCTTGAAAATCTAGATGGCACAGAATGATTGCCCTCTGTATCCAATCAGATTTCTTGCTGAACATTTAAATACTATGATTGAGTTGTCATAGCCAATAGAGCAGTAGAGTAATCTGCTGTAGCTGCATGTGCAAATCTAATCCTACAAGGCTAAATGCATTTACATTGTCTTAATTATTAACATGACACACCCTTCAGAGTTTTTGACAGCTTATTTTCTTATGGAGTGCATTTTTTGTAGCTTTCAGTTTGGTAGTGTTCTACTATAGACATTATCTCAATGTTTGTTTTTATGAATAGGTCAGAAAGGTGAACCTGGGATGACTGTGCCAGAAGTTGGTGAACGTGGACCCCCAGGACAGGATGGAGATCCTGGTTCA[C/T]AAGGACGTCCAGGTATAGAATATAATTACCTATCTCACTACGCTTTGTTCAGCAAACATTTTGTGCATATGGAGCAGATTAGAATTTAAAGTTCAACAGAGAGTGTTTAATTTTCTATGCAGGTGATTCAGGCCCACCTGGACAGCCTGGGTTCCCAGGTTTGCCTGGATCCAAAGGAGAGCCTGGTCTTCCTGGTATTGGTTTGCCAGGACCTCCTGGTGCTAAAGGTACAATACATATATGTATAAGTATATTGCTGCCAGTGCTATTAGGCACTAGGGTTGTAACAATATACCGGTATGACGGTTTACCACGATTTGAACGTGCACGATTATCATACCATGAACAATTGCATATCAACGGTTTTAACCCTTAAAGACCGAGACAGCCCGCGGCTAAAAATAAGTATTGCTCTTAAATGTTTAATAACTTTTGATCCGCTGATCCGATTCATACAATTCAAAGATTGGCATAAAGAAGAGAATCTCAGCTTTCCAGTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa21069
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000073827 | Nonsense | 926 | 1659 | 33 | 49 |
ENSDART00000108738 | Nonsense | 900 | 1633 | 32 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52624808)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 7 | 50894558 |
GRCz11 | 7 | 51169628 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGATGTATCATACTATTGCTTTACAGGAGATGATGGTGTCCCAGGACAGT[C/A]AGGAAATCCAGGTTTTCCAGGGTTAAAAGGAGACAAAGGTGAAACAGGCA
Long Flanking Sequence:
TAGTGTTTCTCACTATTGTCATCTTTTCTACTTCAGGAGTACCGGGGGCGAATGGAGAAAAAGGAGACAGAGGCCCTCCAGGTCTGAGTACTCCAGGCTTCCAGGGTGATAGAGGAATTTCTGGACTTCCTGGACCTCCTGGTCCAGTTGGTCCACCTGGAGTTCCAGGCCGACCTGGACAAGATGGCCTACCAGGACTCCCTGGTAATGCACTGATAGCAATATCCACTAATTAGCAATGTGATTTTTTTTTGTTCTATATGTATGTCTTTTTTGGACTTTCTCTACTAACCCATTATCATTACTAAAGGATCTAAGGGAGAAATGGGCTCAATGGGGCCTCCCGGATCAAAAGGGAACCCCGGCAACCCTGGAGCTCCCGGCTTTCCAGGACCAAAAGGTCTGCAATCTTACTTTTTCTTAAACAATTAATTAAAGTCCCATGTTGAGTGATGTATCATACTATTGCTTTACAGGAGATGATGGTGTCCCAGGACAGT[C/A]AGGAAATCCAGGTTTTCCAGGGTTAAAAGGAGACAAAGGTGAAACAGGCATTCAAGGCCCGCCTGGCATAACCACATCTACAAGTGTACTGAAAGGACAAAAAGGAGAATCTGGTGTTCCAGGTGAGCCAAATCTGTTAGCTTCTAGGGTACACACACCATGATGGTCAACATTTTGTTTGTTAAAGTAAGTAAATAAGTTGTCCCTTTGCAGATTTCAGATATCTATACTCTAGCGTTGCAATATTAAAATCTCTCTAACAAAATCTACCTGGTTTATCAGCAAATATGTTGATTCACCACTATGTGCATAAATGTGTAAATCTCTTAGACCAGGACCATCTCTTATTTTAAGTACACTGAATCAAAGCTCAAATTTTAATAGAATCTTAAAGAAATCTTTTAATTAAAAGTGTATTTTTGTGATTCATCAATTGTCTTCTGTTTGCAATATAGGTTTCAGTGGACCGCCAGGACCAAAGGGTATTACAGGTATCTCTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa16790
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000073827 | Essential Splice Site | 1249 | 1659 | 39 | 49 |
ENSDART00000108738 | Essential Splice Site | 1223 | 1633 | 38 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52626607)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 7 | 50896357 |
GRCz11 | 7 | 51171427 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCAGGGACCTAAAGGTATCCAAGGTCCACCTGGTCCCCCCGGAAGAGCTG[G/A]TAAAGTCGAWATATTATATTACCTTTTGTYCAGGTCTGCCTTCTGGGTTC
Long Flanking Sequence:
GTATCCCTGGAGATAAAGGTCTTGCTGGTCGTGATGGTATTCCAGGACCAGCAGGTCAAAAGGGTGAACCAGGTAGGACTGTCTACAGAGGAATGTGTTGGATGTGCTTAGTGTAGCAAAAGAAGCTAAATAAATTTTTTTGTTTGTTTGCTTTTTTGTCAGGTGCTCCAGGCCTTGGTGGCCCAGGCTTGCCTGGTCAACCTGGTTTGAAAGGTAGAGATTTCTTATATATTCATTTTGTACACCAGTTATGAGTCCTTGTAATGATTTTCCTAGCAGATTTACTGTGATTTACTGTTTGTCTTTTGTTACAGGCGCTAAAGGAGATCCTGGTTTTCCGGGTCCTGCCGGTAGTGCTGGATTTCCTGGTCCAAAGGGTGATGCAGGATTTCCTGGCTTGCCTGGTCAGATTGGTTCTGTAGGACCACCTGGGCCTCCAGGCTTGCCACTGCAGGGACCTAAAGGTATCCAAGGTCCACCTGGTCCCCCCGGAAGAGCTG[G/A]TAAAGTCGATATATTATATTACCTTTTGTCCAGGTCTGCCTTCTGGGTTCCACCATGTCATGAATCATTATCAAATCAAGCTATAAAGAAGGTACCTGAAGTAAGATTTCTAAAAAAGAACACATTTTGTCGCAGCACTTCAAACATGGCCAACAAATATCCACACATATATAGACACAATTATTTGGTTCACAGTCTACTACTAATAATCAATTATGTGCTTTGCTCCTCTTTTTATGTATGCCTATACAATCCAGCAACTGCAGATTAAGGCTTGTAAATGTTATGGCAATCTCCACATAGTTCAGTTTAATAAGGTTTAACACATGCATTTTACCTACTGTCAGAACTTTTGGTTGTAATTTGATTTATAGATTTAACAAAACATCAGGTACCAAAATTCAAGTTTTCTTTGTTGAGAAGCGCTTCAAAAGGACTGTTATAATTGTGACCCAGAGGGCATACTGGCTTTCTTTTGTTTGCTTGTTTGACTGATTTGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa41017
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000073827 | Nonsense | 1562 | 1659 | 47 | 49 |
ENSDART00000108738 | Nonsense | 1536 | 1633 | 46 | 48 |
Genomic Location (Zv9):
Chromosome 7 (position 52642049)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 7 | 50911799 |
GRCz11 | 7 | 51186869 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAATGGTGATTGCTGTACACAGTCAGACCATTCAGTTGCCAGCGTGCCCT[G/T]AAAACTGGGATACCCTCTGGATCGGTTACTCCTTCATGATGGTACGTACT
Long Flanking Sequence:
GAATCATCCTAATCTTCCTCTAGTGGCGCCCCTGTTTCAAATATTCAAATATGACTCAAATATTTTTCAGAGGGCCCAAAATTGCTAGCAGCGCCCCTGACTGTACACCATACTGCATCTTGACTATCTTTTTCTCAATTCAAAAACCATCAGGTACGGCTGGCAGCTGTCTACGGCGTTTCAGCACGATGCCTTTCATGTTCTGCAACATCAACAATGTCTGTAACTTCGCTTCCCGTAATGATTACTCATACTGGCTGTCCACACCACAGCCCATGCCCATGACCATGGCACCCATCACTGGAGAGAACATCAAACCTTACATCAGCCGGTAAGAGTCTGCTGCACAGATGAGCAGTGTAAATCCATTTACTTGACCTGAATCCATTATGTCACCTCAATCTTGTGTGTGTGTGTGTGTTTGTAGGTGTTCTGTGTGTGAAGCTCCAGCAATGGTGATTGCTGTACACAGTCAGACCATTCAGTTGCCAGCGTGCCCT[G/T]AAAACTGGGATACCCTCTGGATCGGTTACTCCTTCATGATGGTACGTACTGTGAAGATCTGGAAGGAACTGAATATTATAAATGATTGAAAATACTTTAGGTGCGTCCCAAATCACATACTTATGCACTATTCTGCGCCATTTTGTAGTACAAATAGTATAAGTAGTGCATTCACCCTGAAAACTCTAAAAAATAATAAGTGCACTTTAAAATCCTGGATGATGCACTTATTCAACCGGTAAAATGAAGTGTGGAATGTGTAGCACTCAGAGATGTATAGTAACGAAGTAGAACTACTTCACTACTGTACTTAAGTACTAAAAGGCAGTATCTGTACTTTACTGGAGTATTATTTTTTTCTCCTACTTCCACTTTTACTTAAGTACATATTTTCCATGAGTTTAATACTTTTACTCCGATAGATTTTTTATGTGCTGCATCGTTACTCGTTACTAGGGGTGTCATGATGATTGATATCAGTTCAGTAGGTCATAACCGGT
Associated Phenotype:
Not determined