ZMP
sox5
Ensembl ID:
ZFIN ID:
Description:
transcription factor SOX-5 [Source:RefSeq peptide;Acc:NP_001028757]
Human Orthologue:
SOX5
Human Description:
SRY (sex determining region Y)-box 5 [Source:HGNC Symbol;Acc:11201]
Mouse Orthologue:
Sox5
Mouse Description:
SRY-box containing gene 5 Gene [Source:MGI Symbol;Acc:MGI:98367]
Alleles
There are 4 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa33440 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa18782 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa33439 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa33440
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000006737 | Nonsense | 223 | 759 | 5 | 15 |
ENSDART00000134595 | Nonsense | 221 | 757 | 5 | 15 |
Genomic Location (Zv9):
Chromosome 4 (position 16085611)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 4 | 17028451 |
GRCz11 | 4 | 17017427 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCGAGAGCAGTTACTGGCTGCCCACGAGGAGCAGAAGAAACTGGCTGCTT[C/A]ACAGATTGAAAAACAACGCCAGCAAATGGAGTTAGCAAAACAGCAACAGG
Long Flanking Sequence:
CAGATATATGACCTCAGACACACAATTGCACACACATGAACTCATTAACAGACGTGCTCATTTGGACATTTGAACGCTTTAGGGGTTTAGTGCACTCAAACACACACACAATTTTTGATTGGTGGTAGTCTGGGGTAATACCGCAGTGCGACTACATCCTGTTGAGTGATTTAGTCTTCCCCTCCTGCCGTCTGCTCTGGGGCTGCTCGTATGTCAGAGCGTTCTCAGCTTTAGTTCGAGGTCGGAGGTCAGCTCATGCTAAATGTGTAGCGAAGGCTAGGTAAACATCAGGGTGATAGCACATCTCGGGAGGAGCACATCTGGGCACAATGCTTCCTGGACTAGCTCTTTGACCTGTGGCCTGTGTCCTTTAACCCTTGCAGGCACCCCGGACAGTCTGGCGGAGAAAGAGCGGCAGTTGATGGGGATGATCACGCAGCTCAGCAGTCTCCGAGAGCAGTTACTGGCTGCCCACGAGGAGCAGAAGAAACTGGCTGCTT[C/A]ACAGATTGAAAAACAACGCCAGCAAATGGAGTTAGCAAAACAGCAACAGGACCAGGTCAGCAAATATTTACAATGTTCGTCATGCGCATGTCTCACTAGTTATATTCAGTTTTATCCAAACTTTTTCAAATGAAGCCAAATAACAATGACCAGAGGGCAATGTAGGCTGATTGTAAATATGCAATATAGGCATTAACCAAGCACAATGCAATAAAACACAAGGCTTGGTGAGTAATGTAGTCTCAATGGTCAAAAATTATTACCAACAATTGTTTTCTGATAGGTATGTAAGTACGTGTTCTGTAAGTATGCCACTTAGCAATGCATTTTACTGCTAAAAGAACAGAAAGAAAATTGATCTGAAACTTGTCTTAAAAGTAGCAGACATTTTTAAAATTGACCCCTGTGGTATGTCAGATTACAGAACACATACCAAAGTTGTCTGTGCATGTAATGCTGGTATTTAAAACATTACGGGGACCTTAAACATTATTATTATT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa18782
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000006737 | Essential Splice Site | 443 | 759 | 11 | 15 |
ENSDART00000134595 | Essential Splice Site | 441 | 757 | 11 | 15 |
Genomic Location (Zv9):
Chromosome 4 (position 16059924)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 4 | 17002764 |
GRCz11 | 4 | 16991740 |
KASP Assay ID:
2259-4783.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTTGTTCCTTATTGAAAGTTGTGTCTTATTCATACATGTCAATTCTTTC[A/G]GACCTGTTATCATCCATCACCTCTGCCGGCTACCTGAATGACCATGAGGC
Long Flanking Sequence:
ACGGCAGATCCTTGATGAACAGTCTGACATGCACAGCTCTTATCGCTGCAGTGCATGCCAGAGTGTGTGTGGTCACGTGATATGCGTTTTTCGCAGGCTAGTATGGACAGAGAGTTGTTCAGAGACGCTAGGTGAAATGCCAGTGTGGACCAAATCGTTTTTACTCTAAAACACTGTTGCGACGTGTAGTTACATTTTTTGAGAGGTGCGCATCAGCGACGCTGACGGCCCTGGCGAGGGCTATGCGTTCACGCGTAGGCAGCGCCGTAGCATACGAGTGCGCTTGAGGCAGAAGTATAAATCAGCCTTAAGTCCCAAAACTGATATCAAAAATGTATTTTTTGTTTTTGAAGTGCGCTAAAGGCATTACTGATAGATGAAGGAACTATTTGTAAAGGACTGCTTGAGATCTAAAAACTTTCATATTTTCCTGCTTGTTGTCTAGTCAAATGTTGTTCCTTATTGAAAGTTGTGTCTTATTCATACATGTCAATTCTTTC[A/G]GACCTGTTATCATCCATCACCTCTGCCGGCTACCTGAATGACCATGAGGCCGTGACCAAAGCTTTCCAGGAGGCCCGAAAGATGAAAGAACAGCTAAAGAGAGAGGAGCAGGTTCTGGACGCCAAAGTAGCAGCAGTCAACAGCTTGAGCCTCAACAACGGACGCTCAGAGAAGGTTCGATTCATGGTGATCTTGCATTAACAGATTCACTCTCTGTTTTAAGTGAATGAAAGTAATCAGCAGATACTAACTTGCTTATCACCAAAAAATATAGCAAATGAAAATTAAAACAGTCGACAAACAGACCTGTTAATTACAACAGAATGCATTAGTCTCTCAACAAAGTGATTTCCCAAAGCTCTTCTTGTAAAGTGGAGGAATGGAGGTGACTAAGATCTGAAAGCTCTATTGTTGTACACGATGGTCATGTCTAAGAGGCAGGCTCAGGGCAGGCAGGGTGCAGTGAACGAAACGCTAATTTTAATGGCGTAGCTGATGTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa33439
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000006737 | Essential Splice Site | 592 | 759 | 13 | 15 |
ENSDART00000134595 | Essential Splice Site | 590 | 757 | 13 | 15 |
Genomic Location (Zv9):
Chromosome 4 (position 16056234)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 4 | 16999074 |
GRCz11 | 4 | 16988050 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCTTCAGGCCTTCCCTGACATGCATAACTCAAATATCAGCAAGATCCTCG[G/A]TGAGAATCAGGGCTAGTAAATCTCTTCAGCTCCTTATCTAACCACTACAG
Long Flanking Sequence:
TTCCCCCATGACCCTTTATATCGAAGTTGATATTTAGCCGCACCAGTTTTTATGAGGTGAGTTGTTAGCACAATGTTCAACCGCCAAACCTAGTCACTTACATTCTCACAATTACTACAAGCTCACCTGACCTGTATTTGAGATATGCATTTAAACTGGAAATCGACTTTGAATCTTGCTCTATTTATTATTAAGTGCCTATTTTCATGATCCAAGTTGATCTTAATGGATAAATGAAGCTGAGCCCTACATTTATTTTATGTTTAGTGTATGTACAATCACATTTGTCTTCGCACAAACAGTAACTCTTGGCATTTGCTCTCCAGGAAGCCCAAGTGTGTCGGACTCGCGGATCTTCCGAGAGGCTCGAGGGCGTGGCAGCAGTGAACCACACATCAAGCGACCCATGAATGCCTTTATGGTCTGGGCTAAAGACGAGAGGAGAAAAATCCTTCAGGCCTTCCCTGACATGCATAACTCAAATATCAGCAAGATCCTCG[G/A]TGAGAATCAGGGCTAGTAAATCTCTTCAGCTCCTTATCTAACCACTACAGGTTTATTCGCTCTGTCTCTTATTTCTATTTGTACATTTTGGAGCTATTTGATAGATTTATTTCCTATCCAACTTTGATTCACCACACACAGTCATTCCCTGATTTGTGAGTACATAAAAGTGGGTGTGGCTTGAAGACTGGCTCCTTTGGGAAGAGCTATCCAGCCAGGCACAGAGAATCCCCTCTGTTCTTCATCCTCAGTGCACACACACAACCCTCTCCCGCACTGCATTGTGTAACCACCGCCTAATGAATCGCTCTAGAGGGCCGACTCCAACAATGATGATATAATTCATTATGCATTAAACCAGCTCTCCAGTCTGTCTGACATTTTCTCCAGACCTCTGGGATTGTGTTTGACATTTTAAAGAGCTCCTAAGCGTTTTATAACGGCGGAAAATCTGGTTTTAATAAGGCCCCGCTCTCTCAATTGTTAACAGAAGGAGTTTC
Associated Phenotype:
Not determined