Busch Lab

ZMP

tsen54

Ensembl ID:
ENSDARG00000036844
ZFIN ID:
ZDB-GENE-050522-454
Description:
tRNA-splicing endonuclease subunit Sen54 [Source:RefSeq peptide;Acc:NP_001018365]
Human Orthologue:
TSEN54
Human Description:
tRNA splicing endonuclease 54 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:27561]
Mouse Orthologue:
Tsen54
Mouse Description:
tRNA splicing endonuclease 54 homolog (S. cerevisiae) Gene [Source:MGI Symbol;Acc:MGI:1923515]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa33341 Nonsense Mutation detected in F1 DNA Not yet available
sa26172 Nonsense Mutation detected in F1 DNA Not yet available
sa12932 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa33341
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000053482 None None 397 4 11
ENSDART00000113247 Nonsense 101 891 4 19
Genomic Location (Zv9):
Chromosome 3 (position 61377808)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 60320698
GRCz11 3 60782526
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCATAGTCAGCTCTTAGTAGTTCTTTGTTTTTTGCAGGGGAAGTTTTGG[C/T]AGACGATGGGTTTTTCAGAAAGAGGCAAGCAGTATCTGCAACCCGAAGAG
Long Flanking Sequence:
TTTTTGAATGAATCGCTTAAATCAGGGGTCACCAATCTCGGTCCTGGAGAGCCGGTGTCCCTGCAGGGTTTAGCTCCAACTTGCCTCAACACACCTGCCTGGATGTTTCAAGTATGCCTAGTAAGACCTTGATTAGCTTGTTCAGGTGTGTTTGATTAGGGTTGGAGCTAAAATCTCCAGGACACCGGCTCTCCAGGAACAAGTTTGGTGATCACTGAATTAAATGAATGACTCAGTGAATCAGTCGTTAAGATGGTGACTTGCTGACAACTACTGATGGTTTTGTTGTCACGTTCATTATCCATACACACCTAAACGAGCCAATGGAGAAAAAAACACACACACACACACACACACACACACAAAATACTGTTTAATTATTCTTATAGATTAAAATCTACAAATAATGCTAGAATGCTATTAATATCGTCAGTGTCACACACTCGTAGTTTCATAGTCAGCTCTTAGTAGTTCTTTGTTTTTTGCAGGGGAAGTTTTGG[C/T]AGACGATGGGTTTTTCAGAAAGAGGCAAGCAGTATCTGCAACCCGAAGAGGCGCTCTACCTCATGGAATGTGTGAGTGTTTATTTTTATAGTCATATTATTTATATCATGTTAGTCATTTAGTATATAATATAATATAATAGTCATTTTATATCATCTATTAGTGTTGCTATGTTCAGAGGCCGCTGTATTGTTGATGTATCTGCTGCTAAAAGACTCAATCTCTGTAGTCGATCATGGTCACTGTTCAGAATCATCACACTGAAGTAAATCTTCATCTTTTTGTGGAAACTGGTTAAACAGTTGAGTTTTACCATTGTTAAATTCATTAGGCAATCTCCAGGTCTGGCAGAAGCACTTTTAGCTTAGCTTAGCATAAATCATTGAATCGGATTAGACCATTAGCTTAGTCCAGGAGTTTGTAAAAGAGTTGGTCATGGAAATTCAGCTTTTTAGTTCGTCAGAAAGTTAGAGAATTTGACATTTTACTTACGCCTGATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa26172
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000053482 Nonsense 40 397 5 11
ENSDART00000113247 Nonsense 142 891 5 19
Genomic Location (Zv9):
Chromosome 3 (position 61378874)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 60321764
GRCz11 3 60783592
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AATGTGCAGGTGTTTTACCGGGACCTTCCTCTGTCCATTCAGGACGGATA[T/G]GAGCGGTTTCTGTCCTCTGACACTGTGACTCTTCATCAGTATCAGGTTTG
Long Flanking Sequence:
GACGATCGTGTCAGTCCCAACATCAGACACGCCCACTGTCAATCGTTGACGCTGAAGATGAACAGTGCGAAATGAAAAGCCAGCTATTCCAGCATGTGCTTTACACAGCGAATGCCGTTCCAGCTGCAACCCTGTACTGGGAAACACCCATACACACTCATTCACACACACACACTCGTACACTACAGCCAATGTAGTTCATCAATTCCCCTATAGCGCAGGTGTTTGGATTGTGGGCGGAACCGGAGCACCCAGAGGAAACCTACGCCAACACAGGGAGAACATGCAAACTCCACATAGAAACGACAACTGACCCAGTCGGGATTTGAATCAGTGACCTTGGCATGAGGCGGCAGTGCTAACCACTGAGCCACCGTGCCGCCCACTCAGGGTCTAAGCGCTTAATTTTTACATGGAAACTTTATTTACATTCTCTCCCTGATTTAGGGCAATGTGCAGGTGTTTTACCGGGACCTTCCTCTGTCCATTCAGGACGGATA[T/G]GAGCGGTTTCTGTCCTCTGACACTGTGACTCTTCATCAGTATCAGGTTTGTTTCAGGTGTCGTCTGAATGAGAAAACACTCTTCTTAAAGGTGCACTCAGTATATCACCGTTAATATAGTGTCTGTAAGGGATAAAGTACATCCAGGCGGTTGTTATCACAGAATAAAGCAGCTGTTGTGTAAAACTGAAGGGGTTTATTCTTTATTATTACATGTCTGTCTGGAATTCTCTATTCTGATTGGTCAGTTGAGACATTCTAAGGTCTTTTACGCCACGGTTTTTTTATTTTTTTGACTGTCCGGCACCATCTAGTGTCTGAATAATGTGCAGGTTAGTGTATACTCCATCAGCTGTTTTAGTTTCTGTTGTGTTTTTGACTGTTTGTCTCCATCTAGTGTCTGAATAATGCGCAGGTTAGTGTATACTCCATCAGCTGTTTTAGTTTCTGTTGTGTTTTTGACTGTTTGGCGCCATCTTGTGTCTAAATAATGTGCAGGTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12932
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000053482 None None 397 None 11
ENSDART00000113247 Nonsense 889 891 19 19
Genomic Location (Zv9):
Chromosome 3 (position 61408881)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 60351771
GRCz11 3 60813599
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATGTATGCAACCACTGTCCTTCTGTTTCTGATAGTGCTGTCCATCGCTTG[G/A]TTCCCATGAGGAAACATATACAACTACACACATGAKCAGGAGATGGTCAA
Long Flanking Sequence:
CATTATGGTAATTAGTAAAAACGTTAGCATGTTTTAAGCAAGTTATTTTAGCATTAGCACTAGCTTATTCGCAAACATTTTACATTCATAAAATCATGCAAAACAATTCAGAATGCATTAGTGAAAACATTATGGCATTGAACATTAAGCAATGTGGATTATGTTAGCATAATAGTAATACAATGGTAATCCAGTTAGCATTATGCTAATTGAGGAACATCTGTTCATAGAGCCCTTTAGAAAAATATGTTGTATGTGTATTTGCGTGCAGACGCCGTGAAGAGCACAGAAGGCCCTGCAGACTCAGTTTCAGACAGGAATGAAGCGCCGCTCACCGCTGATGCTCTCAGGCAGATCATCATGGAGTTTCAGGTCCAGAATCAGCAGCAGAAGAAGAAGAGCCTGAGCTGGACCAGAGTGGCTAAAATCATTGATCTTGTTTTTTTTCTCATGTATGCAACCACTGTCCTTCTGTTTCTGATAGTGCTGTCCATCGCTTG[G/A]TTCCCATGAGGAAACATATACAACTACACACATGATCAGGAGATGGTCAAACTTATATTCGCTGCAAATCCTGCTATTCTTACTTAGAGCTTTTGTCTTGTTTCCAGTCCAAATATTTAGAAATTCCTAATCAAGTAGCCTTTTCTAGACAAGCAAAAAATATTGTGTTGTTTTAAGACAGAATGTGTCACATTTTGACAAGAACTTTTGCTGGTTTTAAGGAAAAAACTCACTTAATTGTGACATATTATTACTGAAAACGAGGAAAAGGGGCTCTATTTTAACGATCTAGTCACAATGTCTAAAACGCGTGACGCAATAACGTGCATTAAACCAATTAGAGTCTCGTCTCTCATTCCCTTTAAAAGTGTTGTGTCGCTCCATGGTGCATTTGCTATTTACATGGCGGCCTTTGTATATGTAAAAACTGAACCCTTCACTTGCGAGAAACAGCATCTGCAGCGCGAGGATAAAGAACGAGCCTCCTCCATTCAGCCTCT
Associated Phenotype:
Not determined