Busch Lab

ZMP

si:dkey-21n12.3

Ensembl ID:
ENSDARG00000068640
ZFIN ID:
ZDB-GENE-091204-206
Human Orthologue:
RSF1
Human Description:
remodeling and spacing factor 1 [Source:HGNC Symbol;Acc:18118]
Mouse Orthologue:
Rsf1
Mouse Description:
remodeling and spacing factor 1 Gene [Source:MGI Symbol;Acc:MGI:2682305]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa34954 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa27652 Splice Site, Nonsense Mutation detected in F1 DNA Not yet available
sa31793 Nonsense Available for shipment Available now
sa10481 Nonsense Available for shipment Available now
sa15230 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa34954
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077161 Essential Splice Site 187 1369 4 22
ENSDART00000135302 None None 113 None 3
ENSDART00000138344 None None 707 None 11

The following genes are also affected by this mutation:

Genomic Location (Zv9):
Chromosome 10 (position 37875617)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 36687778
GRCz11 10 36631536
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTGGAAGAGCAGGATGATTTGGATGGGTCGTCCTGGAAATGTATAGTAAG[G/A]TAGGCATTCTGCATTTAATTTTTGTCCTCTTATTATGCCTTTTTGAAGTA
Long Flanking Sequence:
TTCACACACAGTTCCATATAGCTTTTTATCATGAATTATTTTGGTGCTAAATGAACATATGCATAATGTAATTTCCTATGCTTTTATTGTAGATTTGTCAGGAGTTTAACACCACATGGGCATGGGAGTTGGAAAAGAAAGGTTATCAAGAGTTGACAGTGGAGTGTAAGACAGGAATATTGAAGGTAAGATGAGGAAACCACTGGATTGAGAAACACTGGAAATCAAAATCCAACTATAAAAATTGTTTTGGATTTTTTTATTAACCCAATTTATCTTGTGTTTCTCTACCAGTATTTGTGTGAATGCCAGTTTGATGACAATGTCAAGTTTAAAAATGCTATCAATGAAGAAGACCCGGATAAAATGCGACTTCAGCCTATTGGCCGAGACAAAGACGGCCTCATGTACTGGTTCCAGCTGGACCAAGACCATAATGTAAGGATCTATGTGGAAGAGCAGGATGATTTGGATGGGTCGTCCTGGAAATGTATAGTAAG[G/A]TAGGCATTCTGCATTTAATTTTTGTCCTCTTATTATGCCTTTTTGAAGTATGATTTATTACAAATTTCTCAGAATGAGGCTGTAAATTTACTTGTTATCGACCTTATTCTTTGTGTGCGAGCGGGAGCAACCATTTGAATCTTTTTGTATTGAAGCCTCCGGTCTCATACGTTCATTCATTTTTAGACATTAAAAACAGCTGGTTCTGCTGCTTGATTTTGCAAACGGATATTTTCTTAATATATTATTTTGCCTTGTCTGTATTCTCATGGACACACTTGTTTGTAGAGAAAGTAGTTTCTGGCATTTACTATTCCTAGTCATTTCACGCAGCGGCAACTGAATCTCAAGTTCTAAAACAATCGCAACAATGAGCACACTTCCGCATTGAAGAATGAGGTCAATACAATAGGGTTGTCACGATACTGGAATACGGTACCAATCAATACTGAAGTTTTAAGAACGTCCGTTTCCCGTTAACGTTTGAGTGCTGTTGATAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa27652
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Splice Site, Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077161 Splice Site None 1369 None 22
ENSDART00000135302 None None 113 None 3
ENSDART00000138344 Nonsense 270 707 6 11
Genomic Location (Zv9):
Chromosome 10 (position 37862932)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 36675093
GRCz11 10 36618851
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATCATAACATTTTTTGAAGGTTGAAGTGGAGGAAGAAAAGGAAGAGGTTT[T/A]GGTTAAGGATAAAGCGGAGACGAAGAAGAGCAAAGGCTGGGGACGGAGAT
Long Flanking Sequence:
TAAAATGGTCAAAAATGTTGATTTAAAAATGCTTAATTTAAAATAATACAAAACAATAAAAATAAAATATAAAAGGGGCAGTATAGTGGCTTATTGGTTAGCATTTTTGCCTCACAGCAAGAAGGTCGCTGGTTTGAATGCCGGCAGGGCCAGTTGGCATTTGGTTTCCCCCACAGTCCAAAGACATGCAATATAGGTGAATTGTATGAACCAATTTGGCCATATTGTATGAGTGTGTGTGTGTGAATGTGAGAGTGTATGGTTGGTTTCTAGTACTGGGTTGAGTCTGGAAGGGCATTCACTGCATAATACATATGCTAAAATAGTTAATTCCACTGTGGCGACCCCTGAATAATAAGGACTAAGTTGAAGAAAAATAAATGAATGAATGGTTCTTTAAAAAGTCATTGAAAGTATTTTAATCTCATCCATGAAAAAGTGGGAACCCTGATCATAACATTTTTTGAAGGTTGAAGTGGAGGAAGAAAAGGAAGAGGTTT[T/A]GGTTAAGGATAAAGCGGAGACGAAGAAGAGCAAAGGCTGGGGACGGAGATCAACCAGAGCCAAGAAATACATAAGCTACAGGTATATCTATCTCCTTTGCTCACACAATAATCTTATGGTCTTCATAAATCATCTTTATTCACTTTTTATTGCTCAATCTTGCACAGATTCGATGAGTTTGATGAAGCGATCGAAGAGGCGATTGAGGAGGACATTAAAGAGGCAGAAGGTGGAGGTGAAGGAGCTTTTATTTGCTCTTGCTGTGCAGTATTGTTGATGTTTGAGCTTGAATGACTGATCAGATGTGTGTGTTTTGATCCAGGAGCAGGACGAGGGAAGGACATGGCGAACATCACAGGCCACAGAGGGAAGGACATGTCCACCATCCTGCAGGAGGAAGGCAAAGAGAACGGCCGACCACAAAGAACTAGCGCAGCGCAGAAGAAGAAACGGCGGCGTCTCAATGATCTGGACAGCGACAGCACTGTAGATGAGGAGGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa31793
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077161 Nonsense 1125 1369 19 22
ENSDART00000135302 None None 113 None 3
ENSDART00000138344 Nonsense 441 707 9 11
Genomic Location (Zv9):
Chromosome 10 (position 37859957)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 36672118
GRCz11 10 36615876
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGAATCGTGCGAACAGAAGGAAAACGAGCCGGAGTCGAATCCGGAGAAAA[C/T]AACCTCCGCGCAGGAGACGCAGACCCAGAGGATACTCTGATGAAGAGGAG
Long Flanking Sequence:
CTTTAAACCTGTATGGGTGAAAATACTAGTGGCTGCAGCCCTCTAGGAATTGAGTTTGAGACCATTGCTCTAAGACCTTAAAATATTTTACATGAAATCTGAGAGCTCCCTCATCCTTCATAGACAGCAACAGTCCAGAGACATTCAGTCCAGAGTAATCATCCTCAAAACAATCCCTGTGTTTTTTTAGGTGATCCAATCAGAATATTATTAATCAGCTAAAACACTTTTGTGCGCATATTAAGCAAAAATAACCATTTAATTGCAGTTTATTTCTCCTCAGTGTCAGTATAGGGAGCACAGTATGTATCAGTGTAATGACATTTGCTCTACTCTGATTGGTCAGCAGTTCTGAGGAGGAGTTTGTGGCGTCTGAAAACGCTGAAAGTGAAGACAATGCGCCATCCTTAGAGGACAGCGACTTTGACAGTGATGCTCAAGGTTCACGAGTGAATCGTGCGAACAGAAGGAAAACGAGCCGGAGTCGAATCCGGAGAAAA[C/T]AACCTCCGCGCAGGAGACGCAGACCCAGAGGATACTCTGATGAAGAGGAGCTGGAGACTGATGAAGAGGAGGAGGAAGAGGACGAGATGGGTGAGGCACAGATTCATTTGTTCAGGATTGGAAGTATTTTTAACGAAATATTGAGAAATCAAAACATAAGAAAGGTTTTAATAACATCTATTAGCTAATATAAGACCTGTTGTTTAATTGGGTTGCATTTTGAGGCAAATTAAAATGGTAACTTTTTTGTTGGCTAATAAGCATTGTTTATGTATTTTGCTAGTTTTTGTTTAAATTTACTGTGTTGACTGATTGGTGTGTGTTTCTCTACAGTGACGGAGGGCTCTAGTGAGTTCAGTGACAGTGATCTGGACGTCCGCTGTCGACGCTCGTATCGCAGCCGAAAGCAGGAGGTGAATTACTGTGAAACTTCAGATTCAGACGGCTCGCAAGCCAGCACCAACAAAGACAAGAAAAAGAAGCGCAGACGACTGTCCAGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10481
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077161 Nonsense 1309 1369 22 22
ENSDART00000135302 None None 113 None 3
ENSDART00000138344 Nonsense 647 707 11 11
Genomic Location (Zv9):
Chromosome 10 (position 37857301)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 36669462
GRCz11 10 36613220
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTYCCAGTCCAATAAACGACAACACAGCGGAGCCTCCYTCTACTAATGGA[C/T]AGAGCCCTATAAAGGGTCTGGAGGGCGTCGYGCCACGGCCGGGAGCAGGA
Long Flanking Sequence:
AATAGCTTTTTTTGCCTTTAAATAATTTACAAATTGTTATTCAGTAAATTGGGTTGATATCAATCTCCAAAACCAATACATATCATTTTAACATAGTTTAGACTGATTTAATACATACATTTTTGATGGTTTTATTCTCTTTTGCTCCTCCAGCCAGTTTCCAGTCAGCGGAATCGGAAGAAGAAGAGCGAAAACCCAAGAAGATCAGAGCCGACTCGTCTGAGGAGGAGGAATCCAGGAAGCGACGCAGACGTTTATCCCTAAAGCGCCGACGGGAGTCAGAGGACGATGACGATGATGATGATTCAGATGAATCCGAGGAAGAGGAGCGTCCTGTCCGGAAGCGAGTAAACCGAATCGACTCTGACGAAAGTGAGAGCGAAGAAGAGGAGAAGGAGGTGAAGAAGAGTCCGCAGGAGAAAGACACAGAAGAGACGAGCGCTAGTAAAGGTCCCAGTCCAATAAACGACAACACAGCGGAGCCTCCTTCTACTAATGGA[C/T]AGAGCCCTATAAAGGGTCTGGAGGGCGTCGCGCCACGGCCGGGAGCAGGAGCAACGCCTAAAAATGGCAACACACCATCCATAGCACCCAATGGCCTGGAAGCCGGCGCACAGGAAGAAGACGAAGACGATCTTTTGGGCGTCACAGACCTCGTAGACTATGTCTGCAACAGCGAACAGTTATAACCTGGCATTCATCTTCATCTTTTTGTAGACCCTCACCACAGATCTCATCAACAGTCCCTGTTATAAATGTGCCAGCGGAACAGATTGTCCACGACACGTTAATAATAATAATAATAATAGCTGTAAATATTTTACCGAACAAACAGTATCAAGAGAAGGAGACGGCAATCCTTTCCCTGAGATGTTTCTTCTCAAACGAAACTCCTCTCTGGAAGCAAAACCTCAAAAACCTCTTTCTTTTTTTACACTAATCACTCAGCCATCTGACATCGGTCATGTGTTTCGATCTCCACTGCTGTCTGTCGCACATTTCAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15230
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077161 Nonsense 1362 1369 22 22
ENSDART00000135302 None None 113 None 3
ENSDART00000138344 Nonsense 700 707 11 11
Genomic Location (Zv9):
Chromosome 10 (position 37857140)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 36669301
GRCz11 10 36613059
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAGGAAGAAGACGARGACGATCTTTTGGGCGTCACAGACCTCGTAGACTA[T/A]GTCTGCAACAGCGAACAGTTATAACCTGGCATTCATCTTCATCTTTTTGT
Long Flanking Sequence:
CAGTCAGCGGAATCGGAAGAAGAAGAGCGAAAACCCAAGAAGATCAGAGCCGACTCGTCTGAGGAGGAGGAATCCAGGAAGCGACGCAGACGTTTATCCCTAAAGCGCCGACGGGAGTCAGAGGACGATGACGATGATGATGATTCAGATGAATCCGAGGAAGAGGAGCGTCCTGTCCGGAAGCGAGTAAACCGAATCGACTCTGACGAAAGTGAGAGCGAAGAAGAGGAGAAGGAGGTGAAGAAGAGTCCGCAGGAGAAAGACACAGAAGAGACGAGCGCTAGTAAAGGTCCCAGTCCAATAAACGACAACACAGCGGAGCCTCCTTCTACTAATGGACAGAGCCCTATAAAGGGTCTGGAGGGCGTCGCGCCACGGCCGGGAGCAGGAGCAACGCCTAAAAATGGCAACACACCATCCATAGCACCCAATGGCCTGGAAGCCGGCGCACAGGAAGAAGACGAAGACGATCTTTTGGGCGTCACAGACCTCGTAGACTA[T/A]GTCTGCAACAGCGAACAGTTATAACCTGGCATTCATCTTCATCTTTTTGTAGACCCTCACCACAGATCTCATCAACAGTCCCTGTTATAAATGTGCCAGCGGAACAGATTGTCCACGACACGTTAATAATAATAATAATAATAGCTGTAAATATTTTACCGAACAAACAGTATCAAGAGAAGGAGACGGCAATCCTTTCCCTGAGATGTTTCTTCTCAAACGAAACTCCTCTCTGGAAGCAAAACCTCAAAAACCTCTTTCTTTTTTTACACTAATCACTCAGCCATCTGACATCGGTCATGTGTTTCGATCTCCACTGCTGTCTGTCGCACATTTCAGAGAAAAATGTGGAAGTGGGCGGAGTCTGTGCGAAAGGGGGAGGAGCCTGAGGTGATGCGCTATTCCACTCCGAGGCCATTTTTTTAAACATTCGTCTTTTTTATAATCAACATACGAGCGGAAGTTAAATTTCTAGTGTCATTTTGCTGGGGAATTGTTTT
Associated Phenotype:
Not determined