Busch Lab

ZMP

pcdh1g30

Ensembl ID:
ENSDARG00000075978
ZFIN IDs:
ZDB-GENE-041118-16, ZDB-GENE-041118-17, ZDB-GENE-041118-17, ZDB-GENE-041118-17, ZDB-GENE-041118-17, ZDB-GENE-050609-22, ZDB-GENE-050609-23, ZDB-GENE-050609-23, ZDB-GENE-050609-24, ZDB-GENE-050609-24, ZDB-GENE-050609-25
Description:
protocadherin 1 gamma c 5 [Source:RefSeq peptide;Acc:NP_001012674]
Human Orthologues:
PCDHGC4, PCDHGC5
Human Descriptions:
protocadherin gamma subfamily C, 4 [Source:HGNC Symbol;Acc:8717]
protocadherin gamma subfamily C, 5 [Source:HGNC Symbol;Acc:8718]
Mouse Orthologue:
Pcdhga11
Mouse Description:
protocadherin gamma subfamily A, 11 Gene [Source:MGI Symbol;Acc:MGI:1935228]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa21721 Nonsense Available for shipment Available now
sa31779 Nonsense Available for shipment Available now
sa34893 Nonsense Mutation detected in F1 DNA Not yet available
sa31780 Splice Site, Nonsense Available for shipment Available now
sa34894 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa21721
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109850 Nonsense 69 951 1 4
ENSDART00000111183 None None 957 None 4
ENSDART00000121954 None None 814 None 4
ENSDART00000125115 None None 832 None 4
ENSDART00000125243 None None 949 None 4
ENSDART00000127347 None None 951 None 4
ENSDART00000128580 None None 830 None 2
ENSDART00000129556 None None 818 None 2
ENSDART00000130235 None None 851 None 6
ENSDART00000130399 None None 874 None 9
Genomic Location (Zv9):
Chromosome 10 (position 21869991)
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAGGTTTGAAAATATCTGAGCTGTATGACCGTAAACTGCGAATAGCTTCT[G/T]AATCGGGTAAACAGTATTTCAGTCTGGATTTAAGCAGAGGAGAGATTGTG
Long Flanking Sequence:
GTGTCATTTTGCAAGCAGGCGCTGATGCTGCGCCTTTAAGAGGCTGATTTTTAGCCATTGGTAGCTCAGATTTATGAGAACACCAATCACATGCCGGATTGCACAAAGAGATCTACTCCTTCCCCTTCTAACATTATCGTTTATTGCAAGCATTGCAGAGACGAGGGATGATCTAATCGCTCTGATAAAAATGGAATAAAACACATTAATGTGACAAAATGGACCGGCTAAATTGTCGTATGGGTTGGATCCCTAGATTTGATCAGCGCTTAGAATCGTCTGGATTTTAAATCAAAATGACAAAGAGGGTGGCATTGAAATGGTGGAGGCATTATTTGCTCTTCTTTTTTCTCTTTCTTCTTTTGTGGAATACGACAGAAGGACAGACTCGGTACTCAATTCCAGAGGAATTAAATGTGGGCGCTGTTGTTGGAAACATCGCAAAAGATTTAGGTTTGAAAATATCTGAGCTGTATGACCGTAAACTGCGAATAGCTTCT[G/T]AATCGGGTAAACAGTATTTCAGTCTGGATTTAAGCAGAGGAGAGATTGTGGTCAACGAGAGAATCGACCGAGAAACCATTTGTGGAGAAAACGCAAATTGTCTGTTGCCTCTTCAAATCGTTATTGAGGATCCTTTACAACTTTATAGAGTGGAAGTCGACATACAGGATATTAATGACAATTATCCGCATTTTCAGTCGTCGGACCGTGTTTTAAAGATAGCAGAATCCACTGGTCCTGGCATGCGCTTTCCTTTGGAGAGCGCAGTAGACCTTGATGTGGGCAGTAACTCTTTAAAAACGTACACACTGAGTAAAGACGAATGTTTCAGTTTAAAAATAAAAGATCTTGGCGATGGCCGAAAGATACCCGAATTAGTATTGGAGAAACCTCTGGACCGTGAAAAGAAACCGATGCATCTGTTGATGTTAACTGCTTTAGATGGAGGGAACCCGGTCAGATCAGGAACGTCACAAATTAATGTCACCGTGCTGGATAAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa31779
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109850 Nonsense 430 951 1 4
ENSDART00000111183 None None 957 None 4
ENSDART00000121954 None None 814 None 4
ENSDART00000125115 None None 832 None 4
ENSDART00000125243 None None 949 None 4
ENSDART00000127347 None None 951 None 4
ENSDART00000128580 None None 830 None 2
ENSDART00000129556 None None 818 None 2
ENSDART00000130235 None None 851 None 6
ENSDART00000130399 None None 874 None 9
Genomic Location (Zv9):
Chromosome 10 (position 21871075)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 21848719
GRCz11 10 21806100
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGACCGTGAAAGGTATCCAGAGTATAACGTGGAAATCACTGCTTTTGACT[C/A]AGGCACACCATCTTTGAGTAGCAAAACAATAATTCCTGTTAAAATTCTTG
Long Flanking Sequence:
AGTTGAAGCAAAAGACGTAGACGAAGGTGCAAACGGAGAGATAAAATATTCCTTAGGTGAGCACACGTCTGACACTTTACGCTCGTTGTTTCAAATCGATGAGAAAACTGGGGACATTTTTCTAAACGGGGAATTGGATTATGAAACCACTCCCATGTACAATATTGAGGTACGTGCCAGAGACAAAGGTGTCCCCGAAATGGAGGGCCATTGTACGGTTAAAATAGAAGTGTCAGATATTAACGATAATCCACCACAGATACTGCTTACGTCTAAACCAAACCCTGTGCGCGAGGACGCGCCAAGCGGGACAGTTGTAGCGTTAATAAGCGCAAGAGACACTGACTCTGGAGACAATGGAAAAGTCAGATTGCATACACAGTCTGACCTTCCATTCATTTTAAAAAGATCTTTTTCGAATGAATATTCGTTGGTTACAAATGGTAATTTAGACCGTGAAAGGTATCCAGAGTATAACGTGGAAATCACTGCTTTTGACT[C/A]AGGCACACCATCTTTGAGTAGCAAAACAATAATTCCTGTTAAAATTCTTGATGTTAATGACAACGCCCCGAAGTTCTCTGATAACGTGTATTATGTATACGTAACTGAGAATAACACTCCAGGTTCTATTATCTGTTCAGTGTCCGCCAAAGACATTGATGTCGGCGTAAATGGTAAAATATCATACTCTATTGAGAACCCCAAAGGCTGGGATACCCCAGTCTCGTCGTATATGTACATAAACTCTGACAATGGAAGCATATTTAGCATGCATTCGTTTGACTTCGAAAAAATCAAAGTGTTTGAAGTCATCGTTCAGGCTAAAGATCATGGATCTCCATTTCTAGGCAGCAACGCAACAGTGTATGTGTTTATTTTGGATCAGAACGACAATGTACCGTTTGTCATTTACCCGTCCACATCCATGGGCTCTGTTTCTCATCAGAGGATGCCCCATTCTGCTAAAGCAGGGCATCTCGTAACTAAGGTAACAGCAGTGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa34893
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109850 None None 951 None 4
ENSDART00000111183 None None 957 None 4
ENSDART00000121954 None None 814 None 4
ENSDART00000125115 None None 832 None 4
ENSDART00000125243 Nonsense 273 949 1 4
ENSDART00000127347 None None 951 None 4
ENSDART00000128580 None None 830 None 2
ENSDART00000129556 None None 818 None 2
ENSDART00000130235 None None 851 None 6
ENSDART00000130399 None None 874 None 9
Genomic Location (Zv9):
Chromosome 10 (position 22002885)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 21833413
GRCz11 10 21790794
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAAGCGTTTTAACTGTAAAAGCCACAGATTTAGATGAAGGTCTAAATGGC[G/T]AAATACAATATTTCTTCGGTGCACATACACCAGATGCTGTGAAGAAATGT
Long Flanking Sequence:
TAATAGAGGATCCATTGCAGTTATATCGTGTTAATATAGAAATACAAGATATAAATGACAATGCACCGAATTTTCACACAAAAGATAATGTTTTGAAAATAGCCGAATCTGTTGCCGTGGGCGCAAAATTTCCATTTGAAAGCGCCGAGGATTTAGATGTCGGTAGCAATAGTCTCAAATCATATGCTTTGAGTAATAATGGCTTCTTTCGATTAAATGTGAAAACAGTTGAAGATGGTAAAAAGGTGCCAGAGCTAATAGTTGATAAACCACTTGATCGAGAGAAGCAGTCAGTACATAAGCTCATTTTAACAGCATTAGACGGTGGCGATCCCGTGAAATCTGGAACTATTGTGATACAAGTAATTGTTCAAGATACCAATGACAATGAACCGAAGTTTGAACATTCGCAGTATAAAGCATCTGTGCTGGAAAGTACAAAACCTGGTTCAAGCGTTTTAACTGTAAAAGCCACAGATTTAGATGAAGGTCTAAATGGC[G/T]AAATACAATATTTCTTCGGTGCACATACACCAGATGCTGTGAAGAAATGTTTTAATATCAACACTGACACCGGAGATATCACAGTGATTGGAATACTAGATTACGAAGTAACAAAATTATACACATTTGATGTATGCGCTAAAGACAAAGGGAGCCCAGAACAGGAGGGCCATTCATCAGTGAGGCTTCACATCATTGATGAGAACGACAATATTCCAGAAATCATTTTGACATCTTTACCCAGTCCAGTGTCAGAGAATGCAACAGTCGGTACAGTTGTAGCTTTAATAAACGTGAAAGACTTGGATTCAGGTGATAATGGCAAAGTAAACCTTACCATCTCCAGTCGTTTTCCATTTAAACTAAAACCAGCCTTTGACAATCATTATTCATTGGTAACTGACTCACTTTTAGACCGTGAAGCTAAGGCGGAATATGAAATACAATTAGTAGCTACAGACTCTGGTTCGCCACCTTTAAAATCTACAAAAACTGTAAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa31780
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Splice Site, Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109850 None None 951 None 4
ENSDART00000111183 None None 957 None 4
ENSDART00000121954 None None 814 None 4
ENSDART00000125115 None None 832 None 4
ENSDART00000125243 Splice Site, Nonsense 813 949 1 4
ENSDART00000127347 None None 951 None 4
ENSDART00000128580 None None 830 None 2
ENSDART00000129556 None None 818 None 2
ENSDART00000130235 None None 851 None 6
ENSDART00000130399 None None 874 None 9
Genomic Location (Zv9):
Chromosome 10 (position 22004505)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 21835033
GRCz11 10 21792414
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACACGCTTGATGCGTCATTACCAGACAGCGCGTGGACATTCGAGAGCCAA[C/T]AGGTGAGACAAACTTAATTGTAAACAAATTCTTGGTCATAAATGCAATAG
Long Flanking Sequence:
AGGATAATGGAGAACCGATCCAGTCAACCACAGTCACAGTGGATATACTGATAGAGGACGGGTTTCATGAGCCCATATCAGACTACAGAGAGAAAACTATTGAGCCAAACAGGAAGAGTGGCAAAATTACTTTATATCTGATCATTTCTTTGGCTTCTGTGTCTTTGTTGTGTCTGATGACGTTTTTCATCTTACTGGTGAAATGTGCGCGTGGCAGTAGAGGCGGCTCAAGCTGCTGTATCAGGAGGACAAATTCTGATTACAAAAACCCTAACAGAAACCTGCAGATCCAGCTCAACACTGACGGGCCCATTAAGTATGTGGAGGTTCTGGGAGGAGATATGATGTCTCAGAGTCAATCCTTTGGCTCTTATCTCTCTCCAATGTCCGAATTCAGTGATCTCACCCTCATTAAGCCCAGCAGCACCACAAACTTTACAGACACGCTAAACACGCTTGATGCGTCATTACCAGACAGCGCGTGGACATTCGAGAGCCAA[C/T]AGGTGAGACAAACTTAATTGTAAACAAATTCTTGGTCATAAATGCAATAGCCCTATCATTTGCAACTGTGATAGAGCGAAGAGTCTTTCAGCACATTGGACAGCTCACGTGCCTACTTACAATCTACAACTTATATAAACTGCTAATGTCTTGACTTAAGCTGATTCACAAATCCGCAAGTTTGAATAAAATTGTATAAAACACACTAACTTATCATTCAATTCGGTGTTTTTAAAACATTACATTTTTTCAAATAAATTCGTCCTTTTTTTTCTCTCTCTCTTTTTTAATGCTAAATTCAAAAATGTTTAATGTCTTTGACAAGAACTCGGTTTAACCGTTTGTTTGCACTATATTTGTGATATAAAAACTCCCGGAGATAGGAACGAAAGTTTTAGGCAACATTCAGCACTTTGGACTGGACAGTCCCCGCTAAGAGATTATGATATACAATTTTAAAATGTGACAGAGAGCGTGCTCTCAGAGAACGGTGGAAACTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa34894
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109850 Nonsense 915 951 4 4
ENSDART00000111183 Nonsense 921 957 4 4
ENSDART00000121954 None None 814 4 4
ENSDART00000125115 None None 832 4 4
ENSDART00000125243 Nonsense 913 949 4 4
ENSDART00000127347 Nonsense 915 951 4 4
ENSDART00000128580 None None 830 None 2
ENSDART00000129556 None None 818 None 2
ENSDART00000130235 None None 851 None 6
ENSDART00000130399 None None 874 9 9
Genomic Location (Zv9):
Chromosome 10 (position 22030561)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 21861089
GRCz11 10 21818470
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACGTCTACATCCCAGGCAGCACTGCCACCCTTACAGCCAACCCTCAGCAA[C/T]AGGTTCTCCAGCAGGCCCTTCCTCCACCACAGGCCCTTCCACCTACCGAA
Long Flanking Sequence:
CATTTTACAAAAACATTTCATTGAGCTCTTTTTGTATACATATGTATTCTGTTCCTCACAGTGCTGCTGAGTATGTGATGTGTGTCGATGTTACGCCATACATAATGCATGGGGGAAGGGCAGGCAGAAGCAGGTCACTGAGGAAGCTGCAATGCGGCTCCTGAGTGACTGAATTATGAGCTCTGTGCCGAACCAACCCATATATAACCTTCCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTATGCTCCTTCTATTTATTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTCATCCTACCGTTGCTCTCAGAAGCAAGTGAAGCCACTGCGACTCTTGGCCCTCGCTACAATCTACAGTATGGCCCGGATTACCGTCAGAACGTCTACATCCCAGGCAGCACTGCCACCCTTACAGCCAACCCTCAGCAA[C/T]AGGTTCTCCAGCAGGCCCTTCCTCCACCACAGGCCCTTCCACCTACCGAAGCCCCCAAAGCGGCTCAAACACCAGCCAGTAAGAAGAAACCCACAAAGAAAGACAAGAAGTAAGACCTGTGGAATAGCTGAAGAAACATGTTGCCGGGAATCTAAACATCTATCCTCTCAAACCATGTTGGGTTTGGATGAAGATTTAAAAAGAAAAAAGTGAATAGTATTACTTGTTTTAGCGTTAACATGAGACAATAAGCAACCAAACAAGAGGAAATGTGTTCAGATTCCCGAAGCCATTTCTCTGACAGATATCTCTGTCTTGTAAATAGCATACTAAAACAAGAAGAAACACATTTCTTCTTTTTATTTTTTCCCTCAAATGTCACGTTTTAGGCTTTTTGTGTTCTTTTCAAAGCAAAGTAGATGCTTATTGTGGATACAAAATGAAACGCTGTTAGGCTTTTTAACATGATGTGCCACAACTCTCACCTTAACTGAAGAAAG
Associated Phenotype:
Not determined