ZMP
smyd1a
Ensembl ID:
ZFIN ID:
Description:
SET and MYND domain containing 1 [Source:RefSeq peptide;Acc:NP_991103]
Human Orthologue:
SMYD1
Human Description:
SET and MYND domain containing 1 [Source:HGNC Symbol;Acc:20986]
Mouse Orthologue:
Smyd1
Mouse Description:
SET and MYND domain containing 1 Gene [Source:MGI Symbol;Acc:MGI:104790]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa40615 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa31493 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa40615
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000027811 | Nonsense | 169 | 485 | 3 | 11 |
Genomic Location (Zv9):
Chromosome 5 (position 75232849)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 71333990 |
| GRCz11 | 5 | 72118496 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACCTTCTACACCTACTGGCCTAAGAAAAGCAAAGCAGTGGGAGAGGATTA[T/A]GTGTCGCATCTCTTCGGTGTGGTAGGCACACATCCAACATGGACTTTTTG
Long Flanking Sequence:
TCAGTGATGACACTTTAGTCTGAGCAGAGTCAGAGCGCACTGTCCTCATCAAATCAGTCAACATCAAGACATGATCAGATTTATTGAGCTCATCTAGAGGCCTTCACCTTTCATAGAGACACTTCTGACACCAAATCATCGATTAGAAGGCAAGTTATTATTGCTGTTCCTACAATTTGGATAAGCAGCAACACTTTTGTCAGGGAGTGTAGATGCTCTTCATCTACAGTGTGTTTTTGGGAATGGTGAATGGTTTCGGTTGTTCCATTACTATGATTCCTCTCATATATTATGTGCTGTGTTTTCAGTCTGGTTGCTCGTATCCTGTGGCGCATTCAGAAACACACCGGCCTGGTCTCGGACTCTCAGCTCACCACCCTAGATATGCTGGAGGATCATCTCTCCAGAATGACCCCCGAGGACCTGAAGGAGCTCAAAGTGGATGTGAAAACCTTCTACACCTACTGGCCTAAGAAAAGCAAAGCAGTGGGAGAGGATTA[T/A]GTGTCGCATCTCTTCGGTGTGGTAGGCACACATCCAACATGGACTTTTTGGAAATGCGGTTGAAATTCAGCCTTATGTTTTAGTGAAACTGCAAAAATGTGCTTCAGCACACAATTTGACAGCAGTTTCTATGTGAAATAAACACTAGGGGCAGTATGACACCAACCACTTCCTTTTCCTTTTCACACTAATGATATTTACAGGGACCTCATCGATTAATAAAAGATAGAAAATGTAGACAGCCCCCTCTTGTGGATTCTTCACATGAAATGCACAACAAAATGTACTCTTATAACATATTTTAGATTGCCAAAAATCTAGACGGCACCCTCTAGTGCATTCGTCTTCTGAAAAGTACAACTAAATGTACCTTAAGAAACATATTTCAGATATACAAAAATGCAGACAGCACCCTCTAGTGGATTCATCATCTGAAATGTGCAACAAAATGTTCCTGGAGAAACTTATTTCAGATTCACAAAAATGTGGACAGTGCCCAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa31493
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000027811 | Essential Splice Site | 330 | 485 | 7 | 11 |
Genomic Location (Zv9):
Chromosome 5 (position 75228926)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 71330067 |
| GRCz11 | 5 | 72114573 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGCTCTGGTGAAGATTGAAGCGGCTCGAGCTCAAGGAAACTTCCATGAGG[T/G]GAGACTGAAGATGGATCTGCAGATGTGTGGATCTGGCAGCTGCAGTACAC
Long Flanking Sequence:
TGCAAGTGTGAACACTGTGTGAACGGCACCAAAGATGAGCTGATGACCGCCGTCAAACCCACCGAGGATGGAAAACAGGTCCATAATCCATTCTGTAGGCTCTAATGACTCTAGATCAGCTGAGTGTGTATCTGTGATCAGTGTGTGGAGTGTGTGGATGTACTCAGCAGCGCCTCACTGTGGCAGAGAATAGTGTTACACTCATGCTGGCCGGTGTAGTGATCTGGGGGTGTTTCTAGCAAGTCTAATTAGAACAAATACACTTAATACATGTTCACCATTAGAGGCTGGAGATATTCACACACTGCTGACAGACACACAACTGGGATTAAACCCCCTATAAATGTGATTTGTGCATAATAGATCCCCTTTAAATCATCTTCTCCTTGACTGTGTTTTTCTGCAGCCGTCTGCTGAAGTGGTCAAGCAGCTCACTGACTTCAGTCTTCAGGCTCTGGTGAAGATTGAAGCGGCTCGAGCTCAAGGAAACTTCCATGAGG[T/G]GAGACTGAAGATGGATCTGCAGATGTGTGGATCTGGCAGCTGCAGTACACAATTTCAGCGATGTTTACATTTATCTTGTGGATATTCCTCAGAGGTTTAAATGTATTTATAATATGTATCATATATATTGTACACTTAATTATGAATAAACATTTTCAACCCAGTACTGGAAAACACCCATACACACTCATTCACACACACTCATACACTACGGCCAATCTAGTTCATCAATTCCCTTATAGTGCATGTGTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAGTCCACGCCAACACAGGGAGAACATGCAAACTCCACACAGTAACACCAACTGACCCAGCTTGGACCCAGCAGTTAATCGCGATTTGACAGGACTAATTCTGTGCTATTCTGATGTGGTTAATGCAGGTGATCAGGATCTGCCGTGAGTGTCTGGAGAAGCAGGATCCGGTGTTTGCCGACACTAACGTTCATGTTCTGCGTGTCCTGAGCACCG
Associated Phenotype:
Not determined