ZMP

si:ch211-233f10.5

Ensembl ID:

ENSDARG00000028236

ZFIN IDs:

ZDB-GENE-060526-119, ZDB-GENE-100119-2

Description:

Collagen alpha-1(XXVII) chain B [Source:UniProtKB/Swiss-Prot;Acc:A0MSJ1]

Human Orthologue:

COL27A1

Human Description:

collagen, type XXVII, alpha 1 [Source:HGNC Symbol;Acc:22986]

Mouse Orthologue:

Col27a1

Mouse Description:

collagen, type XXVII, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:2672118]

Alleles

There are 6 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa14233	Essential Splice Site	Available for shipment	Available now
sa31484	Essential Splice Site	Available for shipment	Available now
sa9794	Essential Splice Site	Available for shipment	Available now

Mutation Details

Allele Name:

sa14233

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

T > C

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000097297	Essential Splice Site	753	1619	22	59
ENSDART00000137363	Essential Splice Site	281	1083	17	51

Genomic Location (Zv9):

Chromosome 5 (position 67734406)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	64536047
GRCz11	5	65225044

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

TTAGGGAGAGCCTGGAATGAYTGGAAATCCTGGGATGCTTGGTGAGAGGG[T/C]AAAGGATTTGATGGATTTTTGGTATAKTAGTTAACACTTTTAATCTATAG

Long Flanking Sequence:

ATGGATGGATAGATGGAAGGATGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGACGGACAGAGAGATACTTTAGATATACAGACAGACAGACAGACAGACAAGATGGATGGATGGATGGATGGATGGATGGATACTTTAAATAAACGGACAACGGATGGATGGATGGGTGGATGGATGGATGGATGGATGGGTAATGTAGATAGATAGATATACAGACAGACAGACAGATAGACAGACAGACAGACAGACGGATGAAGGGACGGACGCATGTTTCTTGTTACAGGTTATTATTAATAATCAAAGTGATTATTAATATCAATTAAATTATTAATAATCAAAGTGAGTTTTTTAATTGCACATCTAAATCCTTTACTTTAGGGAGAGCCTGGAATGACTGGAAATCCTGGGATGCTTGGTGAGAGGG[T/C]AAAGGATTTGATGGATTTTTGGTATATTAGTTAACACTTTTAATCTATAGTTAGTAGTCGTTAATGATATTTTTCCATTTCTACTCTGCACAATAGGGTCCTGTTGGTTTCGTCGGGCCTTTTGGTGAGATGGGACTTGCTGGAGAAAAGGTTTGTAAGTCATTTCAGCAAAATGCAATCACTGAATTCAGATTGATGTGGTTAAAAAAACAAAAATGCATCCTCCAATACATCCAAAGCTGATTGATTTCATTAAAATCTGCATTAAAACATTGATTGAATTACAAGTTTTCTAAAATGTTATATTTTAATATGCAAATGAGGCTTTATTTTAATGAAATATTTGCAAATTTGCAAGCATTTCTTGCACAAAAATCAGAACATTCGATGAAGTCAGGTTCAAAATCCTTGTTTTGTTCAATCTGTTTGTCTGTCTGTCTGCCTGCCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa31484

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

T > C

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000097297	Essential Splice Site	1017	1619	36	59
ENSDART00000137363	Essential Splice Site	519	1083	31	51

Genomic Location (Zv9):

Chromosome 5 (position 67705418)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	64507059
GRCz11	5	65196056

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TGAAGGCAAAATAGGGAAAACTGGTGAGAGGGGAAAACCTGGAGAGAAGG[T/C]ATTTTATGTTTGCTTGACATTTTAATTTACAAGCTTTACCAGTTTTCAGT

Long Flanking Sequence:

TCCCCCATCCACACTGGCTGGTCAAATTTAACCATGAAACCTCCAACACTAAATTGGCCAGTGTTTTAGCTTCATTGTCCAACTCCTGTACATGCATAATTATAAAAATTAAGTCAACTTAACAGTTCAAAGTTACAACGGGTTTACTCAATTTTTAAGTTAAGTCAATTTGACGCTTTTAAGTTTACCCACTTAAAATAAAGTGACTAATCAATTTTTGCCATATTGTTTGGGCTGAGAGTTCAGATCCCTTTATTGTCTCCGCACATGCTTTGAAATGTTTCGCTGAGTGATGTTGGATGACAGAAAACACAAACTAAATCTTCTTGTAGTAGATCTGAATGATTAAAGCCATAAGTCACCACTGAATGTGTTCATTCAGAAATCTGTCTCTCTCTCCGTCTATTCATTTTTGCAGTGTGTCAACTCTGTACTGTCATTTCAGGGCCCTGAAGGCAAAATAGGGAAAACTGGTGAGAGGGGAAAACCTGGAGAGAAGG[T/C]ATTTTATGTTTGCTTGACATTTTAATTTACAAGCTTTACCAGTTTTCAGTAATTAGTATTGCATTTCAGCATTTCTCCCTGTGTATATATATGAGTGTAATTGGTGCTTAAAGGGATAGTTCACCCCAAAATAAAAATGTAATCATTATTTACTCTCTCAGATGCTTCCAGTCTTATCAGTTTATTTGATCTGTTTAACAAATAAAAAGATGTAAGAAACCATTAACTTTTAACATCAATAGTAGGAAAAATAATTTGGAAGTCAGCGCAGTGGTTTCAGATTTCCAACATTTTTCTTAATAACTCCTTTTGTGTTCAATAGAAAAAGAAACTCATATAGGTGTGTGACAAGTGGAGTATAATTAAATAATGACAGAACTGAACTTTTTGGGTGAACTATCCTTTTACAATAATTTCAGGGAAGCAAAGGTCATCAAGGTCAACTTGGCGAGATGGGTGCTTTGGGTGAGCAAGGTGACACGGGTTTCATCGGGCCAAAA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa9794

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

G > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000097297	Essential Splice Site	1108	1619	40	59
ENSDART00000137363	Essential Splice Site	610	1083	35	51

Genomic Location (Zv9):

Chromosome 5 (position 67703300)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	64504941
GRCz11	5	65193938

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

AAGGCRATGACGGGAAGGTTGAAGGTCYACCTGGTCCTTCTRGTGACATC[G/A]TGAGTCAGTCCATTAAATATATTTTAACTTAGTTTTGGAGAATATYGGGT

Long Flanking Sequence:

GAAATTTGGTTTCTATAATTAACTCCAATTTCTTGGTTATCATATTCAGGGTGCGACGGGAAAAATGGGTCAGCACGGAGAGCCAGGTTTGGTGGGATATGAAGTAAGTGTTTTTTAAACATGGCTTATAAGAATTTTTATGTTTTATTTTGAGCATAAAGCTTTTAAAACAGCTGATCTACATTATGTAAAATAATGTTAATATTGCTTTTTAGTGCTAGTGGTTTTGTAATCCATTTCTTTTCTTTTTTTAAATTTGCCTTAGGGTCATCAAGGGCCACAAGGTTCATTGGGATCCCCGGGACCAAAAGGTGAAAAGGTATAAATAAATACACATTATTAAAAAAAAAAGATCACATTAGCCATAACGAAACACACAGCCAAATGCATATCAGATGTTTTAGGAGGAAAAGTCCTGCAATGAATTCTGAAATCAATTTCAGGGAGAGCAAGGCGATGACGGGAAGGTTGAAGGTCCACCTGGTCCTTCTGGTGACATC[G/A]TGAGTCAGTCCATTAAATATATTTTAACTTAGTTTTGGAGAATATTGGGTGCCAACCTGATCAATATATTTGATTTTTCATTGGGTTAAAGGGACCTGTTGGCAACAGAGGAGACAGAGGAGAACCTGGTGACCCTGGATACCCAGTGAGTATCCAAAAAATATAACCAAAATTGGACACCAACAAAAATACTTTATATATCAGATTTTGAATTTCAATTCTAAAATAGATTTTGTCAATTTTAAGGGCCTTGAAGGTGTTCAAGGAGAAAGAGGAAAAGAGGGGGCTCCTGGAGTCCCTGTGAGTAAATCTACCTTTATACATCTTTAAACCTGTGTTATTTAAGTAGCACTGATATGCTTTATAGTTTTGTAAATTAGATATTTATTATTAATATATAAAATATTTAAATCTAATACAAATTATATATAAATATGTAAATATATTGTTTTGGATTTTTAGGAAATTTGTATTTACATACACATACAGTTGAAGTCAGA

Associated Phenotype:

Not determined