ZMP
si:ch211-107n23.1
Ensembl ID:
ZFIN ID:
Description:
liprin-alpha-2 [Source:RefSeq peptide;Acc:NP_001038576]
Human Orthologue:
PPFIA2
Human Description:
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), al
Mouse Orthologue:
Ppfia2
Mouse Description:
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), al
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa2166 | Essential Splice Site | F2 line generated | Not yet available |
| sa33462 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa31397 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa2166
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000034834 | Essential Splice Site | 151 | 1154 | 4 | 28 |
| ENSDART00000142140 | Essential Splice Site | 233 | 1236 | 5 | 29 |
Genomic Location (Zv9):
Chromosome 4 (position 20952159)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 4 | 22295494 |
| GRCz11 | 4 | 22016469 |
KASP Assay ID:
554-3221.1 (used for ordering genotyping assays)
KASP Sequence:
GGCAGAGGACCTGTTGGAGGGGACTGATGCCCAGAAACTTCATAGCAAGG[T/C]TAGTATTGACTGCTGCCAGGATTNNNACTCCCTCAGAGCAGTTCATTTTC
Long Flanking Sequence:
ACATCACATGGAAATGAAAAATGCACACAAAATGGGCAATAAAATGTTTGTGGCTTTAAATGGAGCTTAACACTCACTTTAGCGAATAAGGATAGGGATGTTACATTATCTGAATGTCACACTATCTGTGTAGTCTCTAGGACATTCAGACAAAAAGCACATAGCAGTAAAGTTGTACTGGAATATTGGATGTCCTATTTGAATGTAACTATTTTGTGATTTATTGCACTAGTGTTTAGTCCATTTCAAGATTATATTATTATCTTCTTATTTTGTGTTTACCATCTGGCACTGCATATTATTTGGAAATGAAGTGCCCTAGCAGACAGATATGCTTGCTTTCCTGTGTACTCTGTCAGTAACTCTCTCTGTTTATTGTGCTTGATTGCAGATTGTGGCATTAAGGGAGCAGAATGCCCACATTCAGAGGAAGGTGGCGTCAGGAGATGGGGCAGAGGACCTGTTGGAGGGGACTGATGCCCAGAAACTTCATAGCAAGG[T/C]TAGTATTGACTGCTGCCAGGATTTAAACTCCCTCAGAGCAGTTCATTTTCTCCCAATAAGCAGATTTTGATTTTTTTTTTCTATGCTGAAAGTTCACTGCTGTTTATAAAATAGTAATTTCTCCTCACCAAGACAGCATTTATCTGATCAAAAAAGCAGTATAATAAGTAATAACTGTTTTCTATTTGCAATATTTTGTGTTCCTCGTAAAATAATTTTCATACTCGGATTTAAAATGTCATTATTTTTTTGTGGGATATAAAGAGATTCTAAATTCAAGAGTAACAAGATTACCTTTCCAACTATTGAGAGAGATTTTGCTTGTTTAAAGAAATGTTATTTTTGGTATTTTTACAGCATTTATCAGTGTCACATGATCTTTCATGCATCATTTTATCATGCTGATCTGGTGCTCAATACACATTTATTATTGTTATCAATGTTGACAAGTTTACAGCACAACTTTGCATCTAACAATTTCAATATAAACTTACAATTGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa33462
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000034834 | Nonsense | 1080 | 1154 | 26 | 28 |
| ENSDART00000142140 | Nonsense | 1162 | 1236 | 27 | 29 |
Genomic Location (Zv9):
Chromosome 4 (position 20910521)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 4 | 22253856 |
| GRCz11 | 4 | 21974831 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAATTCTAGAGAGGGAATACAACAATCTGCTGGCACTGGGAACAGAGAGA[C/T]GATTAGATGAGGTCAAGCTGTAGTTTTTTGTCTTTTATATAGAACTTTGT
Long Flanking Sequence:
GTTCTGGTGTGGAGTAACGAGCGTGTGATTCGCTGGGTCCAGAGCATCGGCCTCCGAGACTACGCCAACATCCTGTTAGAGAGCGGCGTTCACGGGGCGCTCATCGCACTCGACGACAACTTTGACTACAGCAGCTTGGCCCTGCTGCTGCAGATCCCCAACCAAAACACTCAGGTCTCCATCCACACTTACAACACTACAGCTGTTCATACACTTTCCCCTTTCCCATTACATATAAACAGCAACCCAAGATAACACGGAGCCTAAAACCTAGAGTTATGTCATAGCCCTATAAAAGAGATGTGAATAGGGAAATCAGCTACACTTTCCTCTCTGTACTCACTTTGTGCTTGCTGCAATGGTGTACACACAAACATAAATGTTGCAGTGACTTTGTGTTTATTCTGATAGATTAATGTATGTATTTGTTTTTCTCTCCACAGGCTAGACAAATTCTAGAGAGGGAATACAACAATCTGCTGGCACTGGGAACAGAGAGA[C/T]GATTAGATGAGGTCAAGCTGTAGTTTTTTGTCTTTTATATAGAACTTTGTATATTTATATATGTAAAATATGTTTATAGTGACCCTACGCCAGACATTTAGGGTGCTTTTACACCTAGACTTTTGGTTCGGAACCTGTCTCGTTTGCCCGCGCTCGGATCTGTGGTAAATCAATAGCTCCGAGTTGGCTTGAATGAGGTGGTCTTGGCTTGATTGAAACGAACCCTGGAGCGGATCAATTGTAGTGAGAAAGTGATACGATCCAAGGCCGGTTATATCACACTGTTCTGTTGATATGTAATGGGCTTACAGCTATTTGAAGAGATAATTAGGAGTAGGACGGGAGGTCATTCCAGACATCCCAAGTAAGTTTCAGGAGTCTCTGGCAAATGCACAATGACTCCTGGATGCCCGCAAACAAGTGAAAATCTCCCGGAAGCCGCGGGTCTCCCTCCCGGTCCTCAAATATGTCACGCACTCTTCTGGCTACTCCCCACCGCA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa31397
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000034834 | Nonsense | 1152 | 1154 | 28 | 28 |
| ENSDART00000142140 | Nonsense | 1234 | 1236 | 29 | 29 |
Genomic Location (Zv9):
Chromosome 4 (position 20898015)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 4 | 22241350 |
| GRCz11 | 4 | 21962325 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTCGGACCTTCAGCAGTACAGCGTCTGGACAGCTCCACTGTGAGGACCTA[C/A]TCTTGCTGAGATCTGCGTCTGCGCCACAAGCTGTGAGTTCACCTCTTTCC
Long Flanking Sequence:
GGAACTCACAAATACACACTCTTGGCCTCCATACACCAATCACAGCCGATACACACTTTACCACCAACGACTCACAGCCACGCTTATGCATACTCTCAACACAACTGCACATCACCTTGTATCCATTCAACTACACTTCTGGAGCCACATAACTGCATGTCACTTTCCAACAAGCATGCCAACACATTTGCATGTAAATACACACTTTATTTCAAAGAAAATCCTCACTTTTCCCCCTCATCGCTTTTTACTTTATGTTTACACAACAGTTTCTACCATATACGCAAACGTACTACTCCTAGCCCATTTTTACTGCACCATCATATGGATCCATACATCACAGCCACCCGCAAACCAACTCACTCGCACAAAACAGACAACTTGCATCACTCACTCACTCACTCACTGTCTGTCTTTCTGTCTGTCTCTGTCCATCTCTGTCTCTGTGCAGTCGGACCTTCAGCAGTACAGCGTCTGGACAGCTCCACTGTGAGGACCTA[C/A]TCTTGCTGAGATCTGCGTCTGCGCCACAAGCTGTGAGTTCACCTCTTTCCTTCACTACTTCTAAACCTCCCCATATTCACTTAACACATTCCTAGGCGGAACACATTCTTACTAACAAACACAACTCGCATCTAATAGCACTGCTACATTTACTCACACACACACACCGCACATTCTACACTCACCCGCACGTTACAGCTTCTACAATCTAACTGTTTAACAACAGTACAGTCATCAACATAACAAATACCTCACTTAAATATTTACACCCACATGTGCAACGACTCCGCTTATGTTTCTCTCACATTTCCTACATCTCATGCCTTCATCCAAGTAAAACTGCTAGCTTTTCACATCCTACCAAATCAGACGCAACTCTCAAACTACGCATATCTGCTCCTGGCCTCCACTGCACGGCTTCCTCCACCACCTACAGGAAACTTCTTTGTCTTTTATGATGCTAAAGGCTTACACCGGTTCTTACGCATATTTCAAAAGCC
Associated Phenotype:
Not determined