Busch Lab

ZMP

zgc:171814

Ensembl ID:
ENSDARG00000056651
ZFIN ID:
ZDB-GENE-080402-10
Description:
hypothetical protein LOC100144564 [Source:RefSeq peptide;Acc:NP_001116530]
Human Orthologues:
AC144571.1, GFRA1, GFRA2, GFRA3
Human Descriptions:
GDNF family receptor alpha 1 [Source:HGNC Symbol;Acc:4243]
GDNF family receptor alpha 2 [Source:HGNC Symbol;Acc:4244]
GDNF family receptor alpha 3 [Source:HGNC Symbol;Acc:4245]
Mouse Orthologues:
Gfra1, Gfra2, Gfra3
Mouse Descriptions:
glial cell line derived neurotrophic factor family receptor alpha 1 Gene [Source:MGI Symbol;Acc:MGI:
glial cell line derived neurotrophic factor family receptor alpha 2 Gene [Source:MGI Symbol;Acc:MGI:
glial cell line derived neurotrophic factor family receptor alpha 3 Gene [Source:MGI Symbol;Acc:MGI:

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa30969 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa42161 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa44783 Nonsense Mutation detected in F1 DNA Not yet available
sa42160 Essential Splice Site Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa30969
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000079176 Essential Splice Site 18 440 1 8
ENSDART00000141103 None None 437 None 9
ENSDART00000079176 Essential Splice Site 18 440 1 8
ENSDART00000141103 None None 437 None 9
Genomic Location (Zv9):
Chromosome 13 (position 14167085)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 14175080
GRCz11 13 14306072
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAGAGACGTAAGGACAGCTGGAAACGCTGCAACGTGTTCATCAACGCTGG[T/C]AGGACAAAGACATTTTCTTCAGTAGCTATGAATTGTTTCCTGAAAACCTT
Long Flanking Sequence:
GGAATGCAAAATAGGCTATATTCCCCTTATACCTTAAATAAACATTTATCTAGAAAAAGCTTTTATGTAATTTTAAAATCTGCAATATAGTATGTGAATGTGGAGTTCTGGTGTTACAAACTTACAGTAGCCTAACCTTCTTAGATTGAATGAACAAAACATATTTATTTCTTTATTTAGAAAAATGCAGCATGTTTTGAACAATGTATGTGTTCAATTAAATTTATTATTGTAAAGAAAAATAAATAAGTAATTTTACATTTCCGACATCAAATGAAAGAAAAGAGCATGTGAGAAAAAAACTGACTGTTATGAAGCCGCGTGTAGCAGGTGTGAGGCAGCATGCGCGCGGTTATTCGTTAGTGGATGCACGTTTGTTGTTTGCTAGCTACAAATCCAAGGAAGGGATGATCAGTCCACGATTTCACCAAAGAGCTTGTGTTAAAAATGAAGAGACGTAAGGACAGCTGGAAACGCTGCAACGTGTTCATCAACGCTGG[T/C]AGGACAAAGACATTTTCTTCAGTAGCTATGAATTGTTTCCTGAAAACCTTGCGTAACTCACAAGCCTTCTTGTTATTGCCAGCAGTTAGCGTCCGCATGCAAATTAGCGATGTGCTGTAAACCGTTTGGATTTACCTTAGCACTTGAACTTCAATGCAAAATATGCTATGCGAAATTTAAGTAACGTGGCAGCATTGTGGTTAATGAGTCAAAATATCCTCAAATGTATTTGTATCAGTGCATTGTTATCAGTAAAGCTAACTTGTCAACTAAATTTTGTTGTTGCTCACCAGACACTGTGGTATGTGTTTAAGGAGGTCATATTTTTGCTGTTTGGAAATTGTGTTTTTATTAATTCCCCAACAACAACATTTATTTGAGATGTTTTTTTATCCATGTAAAATGACAATACTTTTTCTTAGCCTATTAGATGAATTAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42161
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000079176 Essential Splice Site 18 440 1 8
ENSDART00000141103 None None 437 None 9
ENSDART00000079176 Essential Splice Site 18 440 1 8
ENSDART00000141103 None None 437 None 9
Genomic Location (Zv9):
Chromosome 13 (position 14167085)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 14175080
GRCz11 13 14306072
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAGAGACGTAAGGACAGCTGGAAACGCTGCAACGTGTTCATCAACGCTGG[T/C]AGGACAAAGACATTTTCTTCAGTAGCTATGAATTGTTTCCTGAAAACCTT
Long Flanking Sequence:
GGAATGCAAAATAGGCTATATTCCCCTTATACCTTAAATAAACATTTATCTAGAAAAAGCTTTTATGTAATTTTAAAATCTGCAATATAGTATGTGAATGTGGAGTTCTGGTGTTACAAACTTACAGTAGCCTAACCTTCTTAGATTGAATGAACAAAACATATTTATTTCTTTATTTAGAAAAATGCAGCATGTTTTGAACAATGTATGTGTTCAATTAAATTTATTATTGTAAAGAAAAATAAATAAGTAATTTTACATTTCCGACATCAAATGAAAGAAAAGAGCATGTGAGAAAAAAACTGACTGTTATGAAGCCGCGTGTAGCAGGTGTGAGGCAGCATGCGCGCGGTTATTCGTTAGTGGATGCACGTTTGTTGTTTGCTAGCTACAAATCCAAGGAAGGGATGATCAGTCCACGATTTCACCAAAGAGCTTGTGTTAAAAATGAAGAGACGTAAGGACAGCTGGAAACGCTGCAACGTGTTCATCAACGCTGG[T/C]AGGACAAAGACATTTTCTTCAGTAGCTATGAATTGTTTCCTGAAAACCTTGCGTAACTCACAAGCCTTCTTGTTATTGCCAGCAGTTAGCGTCCGCATGCAAATTAGCGATGTGCTGTAAACCGTTTGGATTTACCTTAGCACTTGAACTTCAATGCAAAATATGCTATGCGAAATTTAAGTAACGTGGCAGCATTGTGGTTAATGAGTCAAAATATCCTCAAATGTATTTGTATCAGTGCATTGTTATCAGTAAAGCTAACTTGTCAACTAAATTTTGTTGTTGCTCACCAGACACTGTGGTATGTGTTTAAGGAGGTCATATTTTTGCTGTTTGGAAATTGTGTTTTTATTAATTCCCCAACAACAACATTTATTTGAGATGTTTTTTTATCCATGTAAAATGACAATACTTTTTCTTAGCCTATTAGATGAATTAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa44783
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000079176 Nonsense 71 440 2 8
ENSDART00000141103 Nonsense 68 437 2 9
Genomic Location (Zv9):
Chromosome 13 (position 14112181)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 14120176
GRCz11 13 14251168
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTGCAGGCGGAGGAAGCGTCAAGCTGGGTCCAGGAGCACGAAACCACTGC[G/T]AGAACGCCGTTACAGCCCTCATGTCCAGTCCCCTACACAGATGCCAATGC
Long Flanking Sequence:
AGTAAAGAGTGAGTGATGATGCCAGAATTTTAAATTTAGGGTGAACTATTCTTTTAAGCGGACGGTATACTAATACTGGAATGACTGCTGGTTGGCACTTAATTATAAAGTTAGAATACAGCATGTAGAAAAAGTGTTACCAAATGTTTCCTAATTTTATATACAGCATCTACTCTCCAAGACTATTTGGTAATAAATGTAATAATATGCTTCAAACCATCTGGGTAATGCAAGGGATTATTTTGCAATAACAAGTGGCTGTGCATTAGCTAACATTAAATACCATAGTGTGACCTTATTGTATAGTGTTCCTGACAGATCAAATTGTTCTGAAAATTGCAGGGGTGCCGCGGCTGGTGTCTGGGGGCCGATGGGATTGTCTGACTGCGGGGGATTCATGCTCCAGCGATGAAGCGTGCAGCCCGCGTTTGAGAACCCTGCGGCAGTGCGTTGCAGGCGGAGGAAGCGTCAAGCTGGGTCCAGGAGCACGAAACCACTGC[G/T]AGAACGCCGTTACAGCCCTCATGTCCAGTCCCCTACACAGATGCCAATGCAAACGGGGTATGAAGAGAGAGAAGAACTGTCTTAGTATTTACTGGAGCCTCAAGCAATCCATACTGCACGGTGAGAGCCAATCCATATTCATCATTTCCTTTTGTCACATACAAAGCACTCGCTCACAAAATGATGCAATTACAAGTTCTAATACCCACACCCACACGGTCCCCGGGAACCACTTCAATGGATGCTAATTAGTCGCTGTGTTTTAATACGCTAACCAGTTTAGCATTATAGAAGCATTACTTCAAACTGAACTTTTACCTGAGACAGTCTCATTAATTCACATACGCACGCAAAATACTCTGTTACCATAGCCACCAAATCCTTGTTTGTGTGTGTGTGTGTGTGTGTTTACAGGGCTGAGCTTGGTGGAGAATTACCCCTACGAGCCTGTTGAGCGGGGTTTTGATTATGTTCGCCTGGCCTCCATTGCTGCAGGTCAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42160
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000079176 Essential Splice Site 137 440 3 8
ENSDART00000141103 Essential Splice Site 134 437 3 9
Genomic Location (Zv9):
Chromosome 13 (position 14111685)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 14119680
GRCz11 13 14250672
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCCTGTTGAGCGGGGTTTTGATTATGTTCGCCTGGCCTCCATTGCTGCAG[G/A]TCAGTGATTTGCACAGACACACTATGCCGATTATGTGCTATGATGTTGGA
Long Flanking Sequence:
CTGCGAGAACGCCGTTACAGCCCTCATGTCCAGTCCCCTACACAGATGCCAATGCAAACGGGGTATGAAGAGAGAGAAGAACTGTCTTAGTATTTACTGGAGCCTCAAGCAATCCATACTGCACGGTGAGAGCCAATCCATATTCATCATTTCCTTTTGTCACATACAAAGCACTCGCTCACAAAATGATGCAATTACAAGTTCTAATACCCACACCCACACGGTCCCCGGGAACCACTTCAATGGATGCTAATTAGTCGCTGTGTTTTAATACGCTAACCAGTTTAGCATTATAGAAGCATTACTTCAAACTGAACTTTTACCTGAGACAGTCTCATTAATTCACATACGCACGCAAAATACTCTGTTACCATAGCCACCAAATCCTTGTTTGTGTGTGTGTGTGTGTGTGTTTACAGGGCTGAGCTTGGTGGAGAATTACCCCTACGAGCCTGTTGAGCGGGGTTTTGATTATGTTCGCCTGGCCTCCATTGCTGCAG[G/A]TCAGTGATTTGCACAGACACACTATGCCGATTATGTGCTATGATGTTGGAACAGATATTTGGAACTGATCACGATGTGTTTTGTCACTTCTGTGCCAAGCATTAGCAGTGAAGAGTTATTAATAGGGCAGAGCTTAATAGCTTACAACAGCAAAACATGAGCGCTTTGTTTAATGTACTTGGCTATAGCATAGTTGAGTTCATCGGCACGGCTGACGATAAACTGCATTTCCTACGATACAAGGCATGCATTAGGGACCTGTCAAGAGCAGAACAAACATTTCATTGTGGGCCAGAGATTTTCTGGTTGGACCCAGCAAAGACGACTAAACTGTCGGATGTTTCTTTTGTAATCAAGGCTTTTCGCTCCTGGCTCTCTCATCTCTCTCCCATCTCATTACATTGACTCAAAATAGCAGTGTACCAAGTTTAGAAACTTATTTGTGAAGGAGCCACACCACTAAAGCTGTCAGTCTGTCAGCCTCAGTTTATGGGGTGCTT
Associated Phenotype:
Not determined