Busch Lab

ZMP

sema3c

Ensembl ID:
ENSDARG00000034300
ZFIN ID:
ZDB-GENE-050513-5
Description:
Novel protein similar to vertebrate semaphorin 3C (SEMA3C) [Source:UniProtKB/TrEMBL;Acc:Q5RGH9]
Human Orthologue:
SEMA3C
Human Description:
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:HGNC
Mouse Orthologue:
Sema3c
Mouse Description:
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C Gene [Source:

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa15161 Nonsense Available for shipment Available now
sa12671 Nonsense Available for shipment Available now
sa1359 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa15161
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002104 Nonsense 186 757 5 17
ENSDART00000131161 Nonsense 142 713 4 16
Genomic Location (Zv9):
Chromosome 4 (position 21562341)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 22905676
GRCz11 4 22626651
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGAATCAGGGAAAGGGYGCTGCTCCTTCAACCCACAAGTCAACACTGTCT[C/A]GGTCATGCTCMGTGAGTCTTTTATGTCTTTATCCACAGGTGCCAATTTGT
Long Flanking Sequence:
TCCTGTTTTTACCTAAACAGGCATGCCCAAAGTGTGTGTATGGTCACATGATGTACATTTTCAAATGGGGCCTTAGTCTGCCAGTTAAATAGGTTTGTCAGATTCTGAAGGAGATTACCACTAGATGCAGATTAACACCAACAACTGAGGGGTTTCTCAAGGTGTCCATTAACTTTCATAAGTATCAGGATAACTTAAAATTGGACTAAGCAATATCCTCGAAATTGGAAACAAATGTAGGTTGTTCACTGTTCTCTACTCTACTAAATAACAGAAAACATATTATTTATCTTTATCGGGGGGGAAAAAATCCTCCAAAATATTGAGATACCATTTACTGCCAATATCAAAGACCTCTAACCACAATAATAGACAGTGTTTACGAAATGTGAGATTTTGTTATTTTTGGTGTTCTTGGCAGGAGCAAGTGTTCCAGATCTCTTCGCGAGCAGAATCAGGGAAAGGGCGCTGCTCCTTCAACCCACAAGTCAACACTGTCT[C/A]GGTCATGCTCAGTGAGTCTTTTATGTCTTTATCCACAGGTGCCAATTTGTCTTCAACACTTTCTATAACACATTTTCTCCAGGATCTCTTTGTTCATGACCCCACAGTGTCACCAAACACCCTCATTTTGCGGTTGTCTGCACCCCCTTTCTGATGTGACAACTTTGGGTCCTCTGTGGCGCCCCTTTAATCCTTTGATCTGTAATTGGCTAGTTGGTGTTGGGTTGCTGTTGACACAGCTATTAGGCTACATTACATGCACATCCATGCTTTCACACACCAGAGCCATTAGAAACAGCAACATAAACACTCTGGTGCCATTTTAGCACCACTGAAATACTATTATATGTTTGAGTTCATTTTTAATTATAAAGCCCAATTAAAATGTAAAAGTTAGGCATCTAAGAGCTCTGTAAACATCCAATTATAAAATTTAAATGACACTTCAACATACACCTAAGGTAATTACAAACACTGATTAAAAGAGTCAATTGCTCCTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12671
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002104 Nonsense 422 757 11 17
ENSDART00000131161 Nonsense 378 713 10 16
Genomic Location (Zv9):
Chromosome 4 (position 21573411)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 22916746
GRCz11 4 22637721
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GATGTGGTGACGTTTGTGAGGAATCACCCTGTCATGTTTAACCCCATCTA[C/A]CCTGTGGGAAGGAAACCCCTGGTGGWGCGAACGCATGCCGACTACAAATA
Long Flanking Sequence:
AGTACTTTAAGTACTTTTTTATAGTATAGATAGATATAGAAAATATGTAGTTACATTTTAATAATTTTTTACAACATACAGCATTTCTTTTTCAATTTTTACATTAAATTTCTACTCAGTTCACTTTTTAGTGTAAAAGGCATTTTTGCAGTTTATATTTTATAAATAGATCTGTATTATTAATTTATTGTATTTTTTATTATTAAAATCACATTTACTGTTTCCCATTTATGAGACTTAAAATAATTATACTTTACATTTTTATGGGGGCTTTAACAAGACAGAGACTCACTTTTCCAGTGTAGTAACCCAATTAAAATGAATAATCTTTACCAAAGATTAAGCAGTTTTCAGCTTTAGCTTGATAATCTAATCTCCTCATTTTTCTCCTGCAAGTGTCCCGGTGGTGCGTTCACCCCTCACATCCAGAGCACTAAAGAGTTTCCAGATGATGTGGTGACGTTTGTGAGGAATCACCCTGTCATGTTTAACCCCATCTA[C/A]CCTGTGGGAAGGAAACCCCTGGTGGTGCGAACGCATGCCGACTACAAATACACCTCTATAGCGGTGGATCAGGTCCCAGCAGCAGACGGCCACTACCAGGTCCTGTTCCTGGGCACAGGTAAATTACCACACATCTCAAAGCAAATTAATGACTACAAAACCACTGAATGGAAAACAGCTCAAATGCTCCACAATATGTTTCTGCAACTGCCTCAGTTGTGGAAGAAACTCCCACTTCACTTTTCTTGACCCTGACGACAACCTAAATAGCTTTTTCCAGCTAAAAACAAAAAAGTCAGGAAAGATGGAAAAGTTTTTACTGAAAGTAATTTGTCAGTATGAATTATGCTTCATTTAGTAAACTTTAAATTAAACTGTACTTCATTAAATCAGTGCAGCAAGCACACGCTCGACTTAAATCACATATTTCCTAACCATTAAATGCAAAATACTGCTCTAAGCCAAAGCAATTTTTCTCATTATTGTACATTTTTAATAAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1359
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002104 Nonsense 439 757 11 17
ENSDART00000131161 Nonsense 395 713 10 16
Genomic Location (Zv9):
Chromosome 4 (position 21573462)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 22916797
GRCz11 4 22637772
KASP Assay ID:
554-1272.1 (used for ordering genotyping assays)
KASP Sequence:
CCTGTGGGAAGGAAACCCCTGGTGGTGCGAACGCATGCCGACTACAAATA[C/A]ACCTCTATAGCGGTGGATCAGGTCCCAGCAGCAGACGGCCACTACCAGGT
Long Flanking Sequence:
TACATTTTAATAATTTTTTACAACATACAGCATTTCTTTTTCAATTTTTACATTAAATTTCTACTCAGTTCACTTTTTAGTGTAAAAGGCATTTTTGCAGTTTATATTTTATAAATAGATCTGTATTATTAATTTATTGTATTTTTTATTATTAAAATCACATTTACTGTTTCCCATTTATGAGACTTAAAATAATTATACTTTACATTTTTATGGGGGCTTTAACAAGACAGAGACTCACTTTTCCAGTGTAGTAACCCAATTAAAATGAATAATCTTTACCAAAGATTAAGCAGTTTTCAGCTTTAGCTTGATAATCTAATCTCCTCATTTTTCTCCTGCAAGTGTCCCGGTGGTGCGTTCACCCCTCACATCCAGAGCACTAAAGAGTTTCCAGATGATGTGGTGACGTTTGTGAGGAATCACCCTGTCATGTTTAACCCCATCTACCCTGTGGGAAGGAAACCCCTGGTGGTGCGAACGCATGCCGACTACAAATA[C/A]ACCTCTATAGCGGTGGATCAGGTCCCAGCAGCAGACGGCCACTACCAGGTCCTGTTCCTGGGCACAGGTAAATTACCACACATCTCAAAGCAAATTAATGACTACAAAACCACTGAATGGAAAACAGCTCAAATGCTCCACAATATGTTTCTGCAACTGCCTCAGTTGTGGAAGAAACTCCCACTTCACTTTTCTTGACCCTGACGACAACCTAAATAGCTTTTTCCAGCTAAAAACAAAAAAGTCAGGAAAGATGGAAAAGTTTTTACTGAAAGTAATTTGTCAGTATGAATTATGCTTCATTTAGTAAACTTTAAATTAAACTGTACTTCATTAAATCAGTGCAGCAAGCACACGCTCGACTTAAATCACATATTTCCTAACCATTAAATGCAAAATACTGCTCTAAGCCAAAGCAATTTTTCTCATTATTGTACATTTTTAATAAGTACTTTAATATTTATCTTTTTTCAAGTAATTTTTTACTTTAACTGCCCTTG
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461