Busch Lab

ZMP

trpa1a

Ensembl ID:
ENSDARG00000016699
ZFIN ID:
ZDB-GENE-050105-6
Description:
transient receptor potential cation channel, subfamily A, member 1a [Source:RefSeq peptide;Acc:NP_0
Human Orthologue:
TRPA1
Human Description:
transient receptor potential cation channel, subfamily A, member 1 [Source:HGNC Symbol;Acc:497]
Mouse Orthologue:
Trpa1
Mouse Description:
transient receptor potential cation channel, subfamily A, member 1 Gene [Source:MGI Symbol;Acc:MGI:3

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
hu2163 Nonsense Available for shipment Available now
sa8995 Nonsense Mutation detected in F1 DNA Not yet available
sa30822 Nonsense Mutation detected in F1 DNA Not yet available
sa19784 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
hu2163
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004407 Nonsense 141 1115 4 28
ENSDART00000141906 Nonsense 152 1126 4 28
Genomic Location (Zv9):
Chromosome 2 (position 29846957)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 30148592
GRCz11 2 30132125
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCCTCAACAACAGCCACCAGGCACCCATTCATATGGCAGTCAGTCTGGGC[A/T]AAAACTTTGTCTTAGAGGTGGGTCAATCTCATCTTTTTTCTGCAAACACA
Long Flanking Sequence:
TTTTTTTTTTGTAAATACACACCCTCTAGTGGTGAAAATGGCATAACGTGCCTCTAATTGTTCATATGACGTTTTCCAGTGAAAATTCTAATTTGGGTTAAACTTTCAAGATGTAAAATCTATGATTTTGAAGTACAGCATCCACACTGGTGCAACGACTGCCACACAAACTGCCACACAAACTCCTTAAAACTCCTTAAAACATTCATCCATGCCAAGGAGCCACAAGCCATGTAGATCTGATCATTCCACAAAGATGGTGATAAACAGGCTAAGTTTATGGACTGCAGTTCTGAGTCGACTCTTCTGTTACTGTATTTATTATAATGGTCATCATTTTAGAGCTCAATGTGAGAGATGAGGAGGGAAACACACCTCTTCACTGGGCCGTGCAGAAGGATCAGCCCGGGAGCTGCTCTGTGCTTCTGTCTCTGGGAGCAGATCCAAACGTCCTCAACAACAGCCACCAGGCACCCATTCATATGGCAGTCAGTCTGGGC[A/T]AAAACTTTGTCTTAGAGGTGGGTCAATCTCATCTTTTTTCTGCAAACACAGTAATGTTTTACAAGAAACACTGTATTTATGCTTTTGGTGTAGTTGACATGAGTCTTTTGTGATTACAGCAACTTGTGTCACATAAACAAACTGATGTGAACCTGGAGGGAGATTTGGGAAACACTCCTGTTATTTTATCCGCTGCTTTGGACAACCATGAGGCCCTGGGTATATTGGTAAGTGGATTTTTTTAGTTGGTTTTATTTACTTTACTTTTAAATTTGGTTTAAGATACTTATTTTATGTTCGTTTACTCAACCTCAGGTCATCCGAGATGTACGTAAAATGTTTTCATCTGTAGAACATTAAAGAGGAATTTTAGGAAATACATAATACACAAGACAGAATCAATAAAGACATAAAGGCAAAACTATATTTATATTCATCCATAATATATTTCAATCTCACTTTTTTTTACAGATTGAAAAATACAGATTGCAAAAAATTCC
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461

Mutation Details

Allele Name:
sa8995
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004407 Nonsense 401 1115 12 28
ENSDART00000141906 Nonsense 412 1126 12 28
Genomic Location (Zv9):
Chromosome 2 (position 29843006)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 30144641
GRCz11 2 30128174
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTGTACTGTTTACTGACAGGCTGTTGTTTTGTYTTCAGCATGAGAGTGTA[C/T]GAGAGCTGCTTAATGATGAGGATATTGAGGGCTGTACGCCTCTCCATTAC
Long Flanking Sequence:
TAATAATAATAATAATTTTTAGGACAATTATATTTTATCTTTAAATAATAAATGTGATAACAATGTAATTATTATTGTTGTTGCTTTGCATTTTATTCTTAATGGTTATAACTAATAATAATAATCATCAAATAATATAATAGAACATTATAATTTATTATAATAATTAAAATAAGTAAACAATTTCCAAACCGATAAACATTGTGTTTTGTAGGAGCTGATCTGACAAAAAAAGACAAATCTGGATGCAACTTCTTGCACCTGGCCATCCTGCAGCCCAGGGGACTAAAAAACCTGCCCACAGAGGTACTGCAGGTAAAACGTACAAAGCCCTAAAACAATGTGGCCATCTTTCACTGTAGTTCTCAATCCCACAGCTTCCTCAATTATCCCAAAATTAAGTGACTGCTGCCCTCTACTGTTAGAGCCACTGAACAGAGGAGTGAGAGCTTGTACTGTTTACTGACAGGCTGTTGTTTTGTTTTCAGCATGAGAGTGTA[C/T]GAGAGCTGCTTAATGATGAGGATATTGAGGGCTGTACGCCTCTCCATTACGCCTGCAGACTGGGAATACCTGACTCCGTCAAGAACATGCTGGGACTGGAGGTCTCGCTGGACCAGAAGTCCAAAGAGAAGAAATCTGCACTTCATTTTGCAGCTGAGTAAGTCTGATGTCACTGAAGCTGTCCAGAAGTGGAGATAAGAGCTTTTACAACCCCATCAACACACTTAGAAGATGTTAATTCACAGCAAATTAACAAATCACAGAAATGACACAAAACTAATTTTAATAATCAAACACTGATTATATGATACAAGTAAACCAAAGAAAGTAGCTATATGTTTTTTTATGTTTTCTATATGGTAGGTTGTACCCACTTGACCCTGGTCTCTCTCAAAAAAATGTTTTTCTTGCTTTTGTCAGTTGGTGAAGTTTTGTTCCTCGCCACTGTCTTGCTTGATTTGGGACTTGTGGAGCTGCGCATCAATGGATTTGCTCTACAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa30822
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004407 Nonsense 513 1115 14 28
ENSDART00000141906 Nonsense 524 1126 14 28
Genomic Location (Zv9):
Chromosome 2 (position 29840887)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 30142522
GRCz11 2 30126055
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTTGATTTTTACTTTATTTCTATACTTTGTTCAGTGATTACAGAGGTTG[G/A]TCAGGTCTGCATCATGCTGCATCTGAAGGATACACACAGACCATGGACAC
Long Flanking Sequence:
GCTCGAACCAATGTGTCTTAAACGATAAACTGTAACAAACTAACATTTATGTTTAATGGGTTTTTGTCTGCGCAAGGTTGTATACTTACCTGTAAATGTTACAAATTATCTAGTTTTTTTCCCAATTTCGGGGCCATTTCCTGTCAGAGCATTTGACTTCATCAGTTGAGTCGAGCATGCGCGTCAGTAGACAAGAGAAAAGAGCGCGAAAATCTGTTAGCGCGTAGTTTAAGAATGTTTTGTAAGTAGAACCGTCTGGTTATACAAGTGGTAATCAGTCTGACAGGATACCGTTTTTACTTTTCTTTAACTAAACAATAATTTTCTCAAGGCATTGGCAACTCAGCATACTGAACCACTTAACATCAGGGGTAAACTACTTGTGTTGTCACACATTGGAATGTAAAACACATATAGCCTAGCTACCGTAGGCTATAGCTTAAGGATATATTTTGATTTTTACTTTATTTCTATACTTTGTTCAGTGATTACAGAGGTTG[G/A]TCAGGTCTGCATCATGCTGCATCTGAAGGATACACACAGACCATGGACACTTTGCTGACATCTAACATCAAACTTCTGAACAAAACTGATGGAGATGGGGTAACTTAATTTGTCAAATTTACTAAAACACTTGAGACACAACTTGGTCACAAACTACTGATTACTAGCTTTAATTTTAACATGTTTTGTTTTTCATAATTATATAGGACTATAAGCAAGTTAATCAGACTTTACCGTAATCAGAGTAGCTTGCTATTAAATATTACTTTTATTTTAAAATAACACTTTTATTCAGCACATTTGCATTAATTTGATCAAAAGACACAGCACACGTTTACAATGTTACAACAGATTTCAGCTTCAATTATAGGCTTAGCCTAAATATTATTATTATATTAGATTTATATATAAAAAAATGTGATCTCTTTCAGAACACAGCTCTACATTTGGCTGCTAGAGCTGGTCATGTAGCAGCAGTGCGATTGCTGTTATACAGAGGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa19784
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004407 Nonsense 890 1115 23 28
ENSDART00000141906 Nonsense 901 1126 23 28
Genomic Location (Zv9):
Chromosome 2 (position 29836417)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 30138052
GRCz11 2 30121585
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTACCTGATATTGGGATTTGCTTTGTCCTTCTATGCCTTGATGATCGAA[C/T]AGGTGAGTATAGTGATTGTAAAAGACTGTGTACATATTTAATTTGCAAAT
Long Flanking Sequence:
TTGCTCATCGTTCCCAAACCGTTCTGACAGACTGCTGCAGTCTCACAATTTCATCAGCTCTTTGTTTTAATTGCTAACTTAAAATATGTCTAATGATTGAAACTGTCATCTTGCCTTTGGAAGCGGCTGAATTATTTGCGGGATTTGTCGAACTACATGGACTGGGCGGCTGCGATCTGTGCTCTGCTGTTCGTGGTGCCGCTGCTGATGAATCTGAAGAGCTCGTGGCACTGGCAGGCTGGTGCGCTGGCAGCCCTGACCTCCTGGCTCAATCTGCTCCTCTATCTCCAGCGGTACATCACTGCAAGGATCACAAGTAACATGTCCACTGAAGCATTTGTAAAGCCTTATCTGCAATCTCTTCTGTCCGCAGGTTTGAACGGATTGGTATTTATGTGGTGATGTTTCGAGAGATTTCACGGACACTGCTGAGCATTATCGTTTTGTTTTTTTACCTGATATTGGGATTTGCTTTGTCCTTCTATGCCTTGATGATCGAA[C/T]AGGTGAGTATAGTGATTGTAAAAGACTGTGTACATATTTAATTTGCAAATGTGCAATATTAGCTGAATGCTGTAAAGCAGAGGTGCCTAAACTCTGTATTGGAGGGCTAGTGTCCTGCAGATTTTAGTAGTTTCAAACATATTCAGACACACCTAAATCACATAATCAAACTCTATTTAGGTATACTACAAACTTCCAGACAGGTGTGTTTAGGCAAGTTGGAGCTAAACTCTGCAGGACTCTGCAGAACCAAGTTTGGCAACCTTTGCTGTAAGGGTCCATGTGTAGAATTCAGAAACGCTTGTTATTAGTGACACCGGTGGCCCACAATTGAACTGCAGCAAGCAACTTCTTTTTGCTTCATGTTTGCTACCATCTAGACAAGGGGTAAACCACCCCTGTTCCTGGAGATCTACTTTCTTGCAAATTTTACTTGCAGCCTATATCAAACACTTGCCTGTAATTATCAAGTGCTGTTCAGGTCCAAATTTATTGGTTGA
Associated Phenotype:
Not determined